RNA–Protein interactions for RNA: ENST00000617270.4

RFX3-212, Transcript of regulatory factor X3, humanhuman

APPRIS P1 TSL 2 BASIC

Gene RFX3, Length 9,253 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3-212ENST00000617270 CEP89Q96ST8 783 aa7.58□□□□□ -1.2
RFX3-212ENST00000617270 WWC1Q8IX03 1113 aa7.58□□□□□ -1.2
RFX3-212ENST00000617270 NOL8Q76FK4 1167 aaKnown RBP7.58□□□□□ -1.2
RFX3-212ENST00000617270 TPM3P06753 285 aa7.57□□□□□ -1.2
RFX3-212ENST00000617270 VPS53Q5VIR6 699 aa7.57□□□□□ -1.2
RFX3-212ENST00000617270 CHMP7Q8WUX9 453 aaPredicted RBP7.57□□□□□ -1.2
RFX3-212ENST00000617270 GOLGA6L3A6NEY3 463 aa7.56□□□□□ -1.2
RFX3-212ENST00000617270 FOXD4L1Q9NU39 408 aa7.56□□□□□ -1.2
RFX3-212ENST00000617270 PES1O00541 588 aaKnown RBP7.55□□□□□ -1.2
RFX3-212ENST00000617270 ITPRIPQ8IWB1 547 aa7.55□□□□□ -1.2
RFX3-212ENST00000617270 PTMSP20962 102 aa7.55□□□□□ -1.2
RFX3-212ENST00000617270 CCAR2Q8N163 923 aaKnown RBP7.55□□□□□ -1.2
RFX3-212ENST00000617270 RTF1Q92541 710 aaKnown RBP7.55□□□□□ -1.2
RFX3-212ENST00000617270 CCDC34Q96HJ3 373 aa7.55□□□□□ -1.2
RFX3-212ENST00000617270 SAFB2Q14151 953 aaKnown RBP eCLIP7.55□□□□□ -1.2
RFX3-212ENST00000617270 CHMP3Q9Y3E7 222 aa7.55□□□□□ -1.2
RFX3-212ENST00000617270 GORABQ5T7V8 394 aa7.54□□□□□ -1.2
RFX3-212ENST00000617270 MFAP1P55081 439 aaKnown RBP7.54□□□□□ -1.2
RFX3-212ENST00000617270 DCAF1Q9Y4B6 1507 aa7.54□□□□□ -1.2
RFX3-212ENST00000617270 CFAP44Q96MT7 982 aa7.53□□□□□ -1.2
RFX3-212ENST00000617270 KRI1Q8N9T8 703 aaKnown RBP7.53□□□□□ -1.2
RFX3-212ENST00000617270 TOMM22Q9NS69 142 aa7.53□□□□□ -1.2
RFX3-212ENST00000617270 SRPK2P78362 688 aaKnown RBP7.53□□□□□ -1.2
RFX3-212ENST00000617270 FOXD4L5Q5VV16 416 aaPredicted RBP7.53□□□□□ -1.2
RFX3-212ENST00000617270 FOXD4L4Q8WXT5 416 aaPredicted RBP7.53□□□□□ -1.2
RFX3-212ENST00000617270 TMX4Q9H1E5 349 aaPredicted RBP7.53□□□□□ -1.2
RFX3-212ENST00000617270 USP35Q9P2H5 1018 aa7.53□□□□□ -1.2
RFX3-212ENST00000617270 MORC1Q86VD1 984 aa7.53□□□□□ -1.2
RFX3-212ENST00000617270 CLIP1P30622 1438 aa7.53□□□□□ -1.2
RFX3-212ENST00000617270 PLEKHD1A6NEE1 506 aa7.52□□□□□ -1.2
RFX3-212ENST00000617270 TRIM6-TRIM34B2RNG4 842 aa7.52□□□□□ -1.21
RFX3-212ENST00000617270 RBM19Q9Y4C8 960 aaKnown RBP7.52□□□□□ -1.21
RFX3-212ENST00000617270 MARCH6O60337 910 aa7.52□□□□□ -1.21
RFX3-212ENST00000617270 HSP90AA2PQ14568 343 aaPredicted RBP7.51□□□□□ -1.21
RFX3-212ENST00000617270 CFDP1Q9UEE9 299 aaPredicted RBP7.51□□□□□ -1.21
RFX3-212ENST00000617270 CSB-PGBD3P0DP91 1061 aa7.51□□□□□ -1.21
RFX3-212ENST00000617270 IPO8O15397 1037 aaKnown RBP7.5□□□□□ -1.21
RFX3-212ENST00000617270 GPATCH3Q96I76 525 aa7.5□□□□□ -1.21
RFX3-212ENST00000617270 CALD1Q05682 793 aaKnown RBP7.5□□□□□ -1.21
RFX3-212ENST00000617270 TAF7LQ5H9L4 462 aa7.5□□□□□ -1.21
RFX3-212ENST00000617270 G3V3G9 751 aa7.49□□□□□ -1.21
RFX3-212ENST00000617270 TPD52L1Q16890 204 aaPredicted RBP7.49□□□□□ -1.21
RFX3-212ENST00000617270 DCAF8Q5TAQ9 597 aa7.49□□□□□ -1.21
RFX3-212ENST00000617270 RWDD1Q9H446 243 aaPredicted RBP7.49□□□□□ -1.21
RFX3-212ENST00000617270 ZCCHC6Q5VYS8 1495 aaKnown RBP7.49□□□□□ -1.21
RFX3-212ENST00000617270 TMF1P82094 1093 aa7.49□□□□□ -1.21
RFX3-212ENST00000617270 PAK3O75914 559 aaPredicted RBP7.49□□□□□ -1.21
RFX3-212ENST00000617270 CSPP1Q1MSJ5 1256 aa7.49□□□□□ -1.21
RFX3-212ENST00000617270 ZNF771Q7L3S4 317 aaPredicted RBP7.49□□□□□ -1.21
RFX3-212ENST00000617270 SIN3AQ96ST3 1273 aa7.49□□□□□ -1.21
RFX3-212ENST00000617270 VSIG10Q8N0Z9 540 aa7.49□□□□□ -1.21
RFX3-212ENST00000617270 RSF1Q96T23 1441 aaPredicted RBP7.49□□□□□ -1.21
RFX3-212ENST00000617270 RRP12Q5JTH9 1297 aaKnown RBP7.48□□□□□ -1.21
RFX3-212ENST00000617270 SF3A1Q15459 793 aaKnown RBP7.48□□□□□ -1.21
RFX3-212ENST00000617270 PHF14O94880 888 aa7.48□□□□□ -1.21
RFX3-212ENST00000617270 MLECQ14165 292 aa7.48□□□□□ -1.21
RFX3-212ENST00000617270 ZNF592Q92610 1267 aa7.48□□□□□ -1.21
RFX3-212ENST00000617270 KIF16BQ96L93 1317 aa7.48□□□□□ -1.21
RFX3-212ENST00000617270 TSR1Q2NL82 804 aaKnown RBP7.48□□□□□ -1.21
RFX3-212ENST00000617270 DCAF11Q8TEB1 546 aa7.47□□□□□ -1.21
RFX3-212ENST00000617270 CCDC70Q6NSX1 233 aa7.47□□□□□ -1.21
RFX3-212ENST00000617270 FRAT2O75474 233 aaPredicted RBP7.47□□□□□ -1.21
RFX3-212ENST00000617270 CNKSR2Q8WXI2 1034 aa7.47□□□□□ -1.21
RFX3-212ENST00000617270 STK31Q9BXU1 1019 aa7.47□□□□□ -1.21
RFX3-212ENST00000617270 CCDC9Q9Y3X0 531 aaKnown RBP7.47□□□□□ -1.21
RFX3-212ENST00000617270 U2AF1L5P0DN76 240 aaPredicted RBP7.46□□□□□ -1.21
RFX3-212ENST00000617270 U2AF1Q01081 240 aaKnown RBP eCLIP7.46□□□□□ -1.21
RFX3-212ENST00000617270 FOXD4L6Q3SYB3 417 aaPredicted RBP7.46□□□□□ -1.21
RFX3-212ENST00000617270 FOXD4L3Q6VB84 417 aaPredicted RBP7.46□□□□□ -1.21
RFX3-212ENST00000617270 GPS2Q13227 327 aa7.46□□□□□ -1.21
RFX3-212ENST00000617270 TCERG1O14776 1098 aaKnown RBP7.46□□□□□ -1.22
RFX3-212ENST00000617270 STK26Q9P289 416 aa7.46□□□□□ -1.22
RFX3-212ENST00000617270 SLC4A10Q6U841 1118 aa7.46□□□□□ -1.22
RFX3-212ENST00000617270 TCEAL9Q9UHQ7 104 aa7.46□□□□□ -1.22
RFX3-212ENST00000617270 H3BQV1 296 aa7.45□□□□□ -1.22
RFX3-212ENST00000617270 RAD21O60216 631 aa7.45□□□□□ -1.22
RFX3-212ENST00000617270 IFFO2Q5TF58 517 aa7.45□□□□□ -1.22
RFX3-212ENST00000617270 TPM1P09493 284 aa7.45□□□□□ -1.22
RFX3-212ENST00000617270 KTN1Q86UP2 1357 aaKnown RBP7.45□□□□□ -1.22
RFX3-212ENST00000617270 TPM2P07951 284 aa7.45□□□□□ -1.22
RFX3-212ENST00000617270 PCMTD1Q96MG8 357 aaPredicted RBP7.45□□□□□ -1.22
RFX3-212ENST00000617270 BECN2A8MW95 431 aa7.44□□□□□ -1.22
RFX3-212ENST00000617270 HMMRO75330 724 aa7.44□□□□□ -1.22
RFX3-212ENST00000617270 CLUAP1Q96AJ1 413 aa7.44□□□□□ -1.22
RFX3-212ENST00000617270 RCAN3Q9UKA8 241 aa7.44□□□□□ -1.22
RFX3-212ENST00000617270 GOLGA6L19H0YKK7 550 aa7.44□□□□□ -1.22
RFX3-212ENST00000617270 SMC4Q9NTJ3 1288 aa7.44□□□□□ -1.22
RFX3-212ENST00000617270 ST18O60284 1047 aa7.44□□□□□ -1.22
RFX3-212ENST00000617270 HDGFL2Q7Z4V5 671 aaPredicted RBP7.44□□□□□ -1.22
RFX3-212ENST00000617270 SPAG9O60271 1321 aaKnown RBP7.44□□□□□ -1.22
RFX3-212ENST00000617270 KIF3AQ9Y496 699 aa7.43□□□□□ -1.22
RFX3-212ENST00000617270 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP7.43□□□□□ -1.22
RFX3-212ENST00000617270 MCTP1Q6DN14 999 aa7.43□□□□□ -1.22
RFX3-212ENST00000617270 UTP3Q9NQZ2 479 aaKnown RBP eCLIP7.43□□□□□ -1.223e-6■■■■■ 80.1
RFX3-212ENST00000617270 GTF2E1P29083 439 aaPredicted RBP7.43□□□□□ -1.22
RFX3-212ENST00000617270 RSPH6AQ9H0K4 717 aa7.43□□□□□ -1.22
RFX3-212ENST00000617270 IPO7O95373 1038 aaKnown RBP7.42□□□□□ -1.22
RFX3-212ENST00000617270 IPO9Q96P70 1041 aaKnown RBP7.42□□□□□ -1.22
RFX3-212ENST00000617270 KANK1Q14678 1352 aa7.42□□□□□ -1.22
RFX3-212ENST00000617270 DDX11L8A8MPP1 907 aa7.42□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 8.2 ms