RNA–Protein interactions for RNA: ENST00000615136.4

MMP28-204, Transcript of matrix metallopeptidase 28, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene MMP28, Length 2,033 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MMP28-204ENST00000615136 CAMSAP2Q08AD1 1489 aa27.85■■■□□ 2.05
MMP28-204ENST00000615136 ABCC10Q5T3U5 1492 aa27.85■■■□□ 2.05
MMP28-204ENST00000615136 AKNAQ7Z591 1439 aa27.84■■■□□ 2.05
MMP28-204ENST00000615136 NEUROD1Q13562 356 aa27.83■■■□□ 2.05
MMP28-204ENST00000615136 CDC42BPAQ5VT25 1732 aa27.83■■■□□ 2.04
MMP28-204ENST00000615136 SCAF1Q9H7N4 1312 aaKnown RBP27.82■■■□□ 2.04
MMP28-204ENST00000615136 ZNF777Q9ULD5 760 aaPredicted RBP27.8■■■□□ 2.04
MMP28-204ENST00000615136 ACIN1Q9UKV3 1341 aaKnown RBP27.77■■■□□ 2.04
MMP28-204ENST00000615136 ABCC2Q92887 1545 aa27.76■■■□□ 2.03
MMP28-204ENST00000615136 ROCK1Q13464 1354 aa27.74■■■□□ 2.03
MMP28-204ENST00000615136 DENND4BO75064 1496 aaPredicted RBP27.73■■■□□ 2.03
MMP28-204ENST00000615136 CENPBP07199 599 aaPredicted RBP27.7■■■□□ 2.02
MMP28-204ENST00000615136 CROCC2H7BZ55 1655 aa27.68■■■□□ 2.02
MMP28-204ENST00000615136 TRIM52Q96A61 297 aa27.68■■■□□ 2.02
MMP28-204ENST00000615136 ADGBQ8N7X0 1667 aa27.63■■■□□ 2.01
MMP28-204ENST00000615136 CDC42BPBQ9Y5S2 1711 aa27.63■■■□□ 2.01
MMP28-204ENST00000615136 NCOA1Q15788 1441 aa27.63■■■□□ 2.01
MMP28-204ENST00000615136 TTC37Q6PGP7 1564 aa27.63■■■□□ 2.01
MMP28-204ENST00000615136 ZCCHC11Q5TAX3 1644 aaKnown RBP27.61■■■□□ 2.01
MMP28-204ENST00000615136 PREX2Q70Z35 1606 aa27.61■■■□□ 2.01
MMP28-204ENST00000615136 MIER1Q8N108 512 aa27.6■■■□□ 2.01
MMP28-204ENST00000615136 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP27.59■■■□□ 2.01
MMP28-204ENST00000615136 ADGRL2O95490 1459 aa27.59■■■□□ 2.01
MMP28-204ENST00000615136 MPHOSPH9Q99550 1183 aa27.59■■■□□ 2.01
MMP28-204ENST00000615136 TIMELESSQ9UNS1 1208 aa27.59■■■□□ 2.01
MMP28-204ENST00000615136 UHRF1BP1LA0JNW5 1464 aa27.59■■■□□ 2.01
MMP28-204ENST00000615136 SAMD9LQ8IVG5 1584 aa27.58■■■□□ 2.01
MMP28-204ENST00000615136 HNRNPMP52272 730 aaKnown RBP eCLIP27.57■■■□□ 2
MMP28-204ENST00000615136 PPP1R15AO75807 674 aaPredicted RBP27.56■■■□□ 2
MMP28-204ENST00000615136 KDM5BQ9UGL1 1544 aa27.56■■■□□ 2
MMP28-204ENST00000615136 FOXD1Q16676 465 aa27.55■■■□□ 2
MMP28-204ENST00000615136 KCNH8Q96L42 1107 aa27.54■■■□□ 2
MMP28-204ENST00000615136 MBD5Q9P267 1494 aa27.53■■■□□ 2
MMP28-204ENST00000615136 TONSLQ96HA7 1378 aa27.53■■■□□ 2
MMP28-204ENST00000615136 C9orf84Q5VXU9 1444 aa27.51■■■□□ 2
MMP28-204ENST00000615136 SHANK2Q9UPX8 1470 aa27.51■■□□□ 1.99
MMP28-204ENST00000615136 ANKRD30AQ9BXX3 1397 aa27.5■■□□□ 1.99
MMP28-204ENST00000615136 ARHGEF5Q12774 1597 aa27.49■■□□□ 1.99
MMP28-204ENST00000615136 ARHGAP5Q13017 1502 aa27.48■■□□□ 1.99
MMP28-204ENST00000615136 MYO5CQ9NQX4 1742 aa27.46■■□□□ 1.99
MMP28-204ENST00000615136 PZPP20742 1482 aa27.46■■□□□ 1.99
MMP28-204ENST00000615136 SYCP2Q9BX26 1530 aa27.44■■□□□ 1.98
MMP28-204ENST00000615136 ANKRD50Q9ULJ7 1429 aa27.44■■□□□ 1.98
MMP28-204ENST00000615136 TSPY4P0CV99 314 aa27.43■■□□□ 1.98
MMP28-204ENST00000615136 TSPY10P0CW01 314 aa27.43■■□□□ 1.98
MMP28-204ENST00000615136 OSCARQ8IYS5 282 aa27.43■■□□□ 1.98
MMP28-204ENST00000615136 SLC4A1APQ9BWU0 796 aaKnown RBP27.43■■□□□ 1.98
MMP28-204ENST00000615136 CCDC141Q6ZP82 1450 aa27.43■■□□□ 1.98
MMP28-204ENST00000615136 ANKRD30BQ9BXX2 1392 aa27.4■■□□□ 1.98
MMP28-204ENST00000615136 KIF15Q9NS87 1388 aa27.36■■□□□ 1.97
MMP28-204ENST00000615136 PLCH2O75038 1416 aa27.36■■□□□ 1.97
MMP28-204ENST00000615136 ARHGEF12Q9NZN5 1544 aa27.36■■□□□ 1.97
MMP28-204ENST00000615136 HIRIP3Q9BW71 556 aaPredicted RBP27.34■■□□□ 1.97
MMP28-204ENST00000615136 GTF3C3Q9Y5Q9 886 aa27.33■■□□□ 1.97
MMP28-204ENST00000615136 YTHDC1Q96MU7 727 aaKnown RBP27.33■■□□□ 1.96
MMP28-204ENST00000615136 RSPH4AQ5TD94 716 aa27.3■■□□□ 1.96
MMP28-204ENST00000615136 RPRD2Q5VT52 1461 aaKnown RBP27.3■■□□□ 1.96
MMP28-204ENST00000615136 KIAA1107Q9UPP5 1409 aa27.29■■□□□ 1.96
MMP28-204ENST00000615136 WDR7Q9Y4E6 1490 aa27.29■■□□□ 1.96
MMP28-204ENST00000615136 L3MBTL2Q969R5 705 aa27.28■■□□□ 1.96
MMP28-204ENST00000615136 MAST1Q9Y2H9 1570 aa27.28■■□□□ 1.96
MMP28-204ENST00000615136 NUP155O75694 1391 aa27.27■■□□□ 1.96
MMP28-204ENST00000615136 PKD2Q13563 968 aa27.26■■□□□ 1.95
MMP28-204ENST00000615136 PLEKHH2Q8IVE3 1493 aa27.26■■□□□ 1.95
MMP28-204ENST00000615136 EFCAB2Q5VUJ9 269 aa27.25■■□□□ 1.95
MMP28-204ENST00000615136 ABCC1P33527 1531 aa27.24■■□□□ 1.95
MMP28-204ENST00000615136 TEX14Q8IWB6 1497 aa27.23■■□□□ 1.95
MMP28-204ENST00000615136 KDM5DQ9BY66 1539 aa27.23■■□□□ 1.95
MMP28-204ENST00000615136 ASXL2Q76L83 1435 aa27.21■■□□□ 1.95
MMP28-204ENST00000615136 TRAPPC8Q9Y2L5 1435 aa27.21■■□□□ 1.95
MMP28-204ENST00000615136 PLXNC1O60486 1568 aa27.19■■□□□ 1.94
MMP28-204ENST00000615136 ABCA9Q8IUA7 1624 aa27.17■■□□□ 1.94
MMP28-204ENST00000615136 ARAP3Q8WWN8 1544 aa27.16■■□□□ 1.94
MMP28-204ENST00000615136 DDX10Q13206 875 aaKnown RBP27.14■■□□□ 1.93
MMP28-204ENST00000615136 NBPF8Q3BBV2 869 aa27.13■■□□□ 1.93
MMP28-204ENST00000615136 FAM135AQ9P2D6 1515 aa27.12■■□□□ 1.93
MMP28-204ENST00000615136 AFAP1Q8N556 730 aa27.11■■□□□ 1.93
MMP28-204ENST00000615136 FANCAO15360 1455 aa27.1■■□□□ 1.93
MMP28-204ENST00000615136 UNC13BO14795 1591 aa27.1■■□□□ 1.93
MMP28-204ENST00000615136 DUOX2Q9NRD8 1548 aa27.08■■□□□ 1.93
MMP28-204ENST00000615136 GRWD1Q9BQ67 446 aaKnown RBP eCLIP27.06■■□□□ 1.92
MMP28-204ENST00000615136 HSPA5P11021 654 aaKnown RBP27.05■■□□□ 1.92
MMP28-204ENST00000615136 NPM1P06748 294 aaKnown RBP eCLIP27.04■■□□□ 1.92
MMP28-204ENST00000615136 ZFYVE16Q7Z3T8 1539 aa27.04■■□□□ 1.92
MMP28-204ENST00000615136 SPAG9O60271 1321 aaKnown RBP27.03■■□□□ 1.92
MMP28-204ENST00000615136 ERBINQ96RT1 1412 aa27.01■■□□□ 1.91
MMP28-204ENST00000615136 ADGRL1O94910 1474 aa27■■□□□ 1.91
MMP28-204ENST00000615136 IQGAP3Q86VI3 1631 aa26.99■■□□□ 1.91
MMP28-204ENST00000615136 SCAPERQ9BY12 1400 aa26.98■■□□□ 1.91
MMP28-204ENST00000615136 MAGI2Q86UL8 1455 aa26.98■■□□□ 1.91
MMP28-204ENST00000615136 RTEL1-TNFRSF6BF6WH68 1400 aa26.97■■□□□ 1.91
MMP28-204ENST00000615136 PELP1Q8IZL8 1130 aaKnown RBP26.97■■□□□ 1.91
MMP28-204ENST00000615136 EIF4G2P78344 907 aaKnown RBP eCLIP26.96■■□□□ 1.91
MMP28-204ENST00000615136 INO80Q9ULG1 1556 aaPredicted RBP26.95■■□□□ 1.91
MMP28-204ENST00000615136 PLA2R1Q13018 1463 aa26.94■■□□□ 1.9
MMP28-204ENST00000615136 ATP7AQ04656 1500 aa26.93■■□□□ 1.9
MMP28-204ENST00000615136 ZNF326Q5BKZ1 582 aaKnown RBP26.91■■□□□ 1.9
MMP28-204ENST00000615136 WASHC2AQ641Q2 1341 aa26.91■■□□□ 1.9
MMP28-204ENST00000615136 CD109Q6YHK3 1445 aa26.89■■□□□ 1.9
MMP28-204ENST00000615136 C11orf95C9JLR9 678 aaPredicted RBP26.87■■□□□ 1.89
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms