RNA–Protein interactions for RNA: ENST00000612672.1

MMP28-203, Transcript of matrix metallopeptidase 28, humanhuman

TSL 1 (best) BASIC

Gene MMP28, Length 1,092 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MMP28-203ENST00000612672 SCAPERQ9BY12 1400 aa39.29■■■■□ 3.88
MMP28-203ENST00000612672 KIF14Q15058 1648 aa39.29■■■■□ 3.88
MMP28-203ENST00000612672 MYO5CQ9NQX4 1742 aa39.28■■■■□ 3.88
MMP28-203ENST00000612672 ARHGAP35Q9NRY4 1499 aa39.24■■■■□ 3.87
MMP28-203ENST00000612672 LRRIQ1Q96JM4 1722 aa39.23■■■■□ 3.87
MMP28-203ENST00000612672 MLECQ14165 292 aa39.23■■■■□ 3.87
MMP28-203ENST00000612672 EHMT2Q96KQ7 1210 aa39.23■■■■□ 3.87
MMP28-203ENST00000612672 ARHGEF12Q9NZN5 1544 aa39.19■■■■□ 3.86
MMP28-203ENST00000612672 FMN1Q68DA7 1419 aa39.14■■■■□ 3.86
MMP28-203ENST00000612672 ATP10AO60312 1499 aa39.14■■■■□ 3.86
MMP28-203ENST00000612672 C9orf84Q5VXU9 1444 aa39.12■■■■□ 3.85
MMP28-203ENST00000612672 ATP1B4Q9UN42 357 aaPredicted RBP39.11■■■■□ 3.85
MMP28-203ENST00000612672 KDM5CP41229 1560 aa39.08■■■■□ 3.85
MMP28-203ENST00000612672 PREX1Q8TCU6 1659 aa39.06■■■■□ 3.84
MMP28-203ENST00000612672 UBTFP17480 764 aaKnown RBP39.06■■■■□ 3.84
MMP28-203ENST00000612672 EFCAB2Q5VUJ9 269 aa39.05■■■■□ 3.84
MMP28-203ENST00000612672 TROQ12816 1431 aaPredicted RBP39.05■■■■□ 3.84
MMP28-203ENST00000612672 CDC42BPBQ9Y5S2 1711 aa39.03■■■■□ 3.84
MMP28-203ENST00000612672 ARHGAP5Q13017 1502 aa39.03■■■■□ 3.84
MMP28-203ENST00000612672 DIP2CQ9Y2E4 1556 aa39.01■■■■□ 3.84
MMP28-203ENST00000612672 ZNF518AQ6AHZ1 1483 aa39.01■■■■□ 3.84
MMP28-203ENST00000612672 CEBPAP49715 358 aaPredicted RBP38.98■■■■□ 3.83
MMP28-203ENST00000612672 ABCA6Q8N139 1617 aa38.97■■■■□ 3.83
MMP28-203ENST00000612672 AFAP1Q8N556 730 aa38.96■■■■□ 3.83
MMP28-203ENST00000612672 STRCQ7RTU9 1775 aa38.95■■■■□ 3.83
MMP28-203ENST00000612672 CDK11AQ9UQ88 783 aaPredicted RBP38.92■■■■□ 3.82
MMP28-203ENST00000612672 PREX2Q70Z35 1606 aa38.92■■■■□ 3.82
MMP28-203ENST00000612672 CERKQ8TCT0 537 aa38.9■■■■□ 3.82
MMP28-203ENST00000612672 REREQ9P2R6 1566 aa38.9■■■■□ 3.82
MMP28-203ENST00000612672 CLIP1P30622 1438 aa38.89■■■■□ 3.82
MMP28-203ENST00000612672 ABCC1P33527 1531 aa38.87■■■■□ 3.81
MMP28-203ENST00000612672 ITSN2Q9NZM3 1697 aa38.87■■■■□ 3.81
MMP28-203ENST00000612672 C3P01024 1663 aa38.85■■■■□ 3.81
MMP28-203ENST00000612672 TRAPPC8Q9Y2L5 1435 aa38.83■■■■□ 3.81
MMP28-203ENST00000612672 CHIC1Q5VXU3 224 aa38.83■■■■□ 3.81
MMP28-203ENST00000612672 MLH3Q9UHC1 1453 aa38.81■■■■□ 3.8
MMP28-203ENST00000612672 CDC42BPAQ5VT25 1732 aa38.8■■■■□ 3.8
MMP28-203ENST00000612672 KIDINS220Q9ULH0 1771 aa38.78■■■■□ 3.8
MMP28-203ENST00000612672 SETD1BQ9UPS6 1966 aaKnown RBP38.77■■■■□ 3.8
MMP28-203ENST00000612672 UHRF1BP1Q6BDS2 1440 aa38.76■■■■□ 3.8
MMP28-203ENST00000612672 CASKIN1Q8WXD9 1431 aa38.75■■■■□ 3.79
MMP28-203ENST00000612672 AGLP35573 1532 aa38.73■■■■□ 3.79
MMP28-203ENST00000612672 MYT1LQ9UL68 1186 aa38.72■■■■□ 3.79
MMP28-203ENST00000612672 CCDC18Q5T9S5 1454 aa38.72■■■■□ 3.79
MMP28-203ENST00000612672 SAMD9LQ8IVG5 1584 aa38.64■■■■□ 3.78
MMP28-203ENST00000612672 FYCO1Q9BQS8 1478 aa38.58■■■■□ 3.77
MMP28-203ENST00000612672 SYCP2Q9BX26 1530 aa38.57■■■■□ 3.76
MMP28-203ENST00000612672 PTPRTO14522 1441 aa38.54■■■■□ 3.76
MMP28-203ENST00000612672 DMRT2Q9Y5R5 561 aa38.53■■■■□ 3.76
MMP28-203ENST00000612672 GPATCH8Q9UKJ3 1502 aaKnown RBP38.51■■■■□ 3.76
MMP28-203ENST00000612672 LTBP4Q8N2S1 1624 aa38.51■■■■□ 3.76
MMP28-203ENST00000612672 MROH2AA6NES4 1674 aa38.51■■■■□ 3.76
MMP28-203ENST00000612672 SUPT6HQ7KZ85 1726 aaKnown RBP38.51■■■■□ 3.76
MMP28-203ENST00000612672 NCOA1Q15788 1441 aa38.47■■■■□ 3.75
MMP28-203ENST00000612672 CNTLNQ9NXG0 1405 aa38.46■■■■□ 3.75
MMP28-203ENST00000612672 INO80Q9ULG1 1556 aaPredicted RBP38.44■■■■□ 3.74
MMP28-203ENST00000612672 ZNF777Q9ULD5 760 aaPredicted RBP38.44■■■■□ 3.74
MMP28-203ENST00000612672 ESF1Q9H501 851 aaKnown RBP38.43■■■■□ 3.74
MMP28-203ENST00000612672 PLXNC1O60486 1568 aa38.43■■■■□ 3.74
MMP28-203ENST00000612672 CLTCQ00610 1675 aaKnown RBP38.42■■■■□ 3.74
MMP28-203ENST00000612672 ATP7AQ04656 1500 aa38.42■■■■□ 3.74
MMP28-203ENST00000612672 CAMSAP1Q5T5Y3 1602 aa38.4■■■■□ 3.74
MMP28-203ENST00000612672 HNRNPMP52272 730 aaKnown RBP eCLIP38.39■■■■□ 3.74
MMP28-203ENST00000612672 NPATQ14207 1427 aa38.37■■■■□ 3.73
MMP28-203ENST00000612672 SPAG9O60271 1321 aaKnown RBP38.36■■■■□ 3.73
MMP28-203ENST00000612672 ILDR2Q71H61 639 aa38.34■■■■□ 3.73
MMP28-203ENST00000612672 MYO3AQ8NEV4 1616 aa38.34■■■■□ 3.73
MMP28-203ENST00000612672 ZMYM3Q14202 1370 aa38.33■■■■□ 3.73
MMP28-203ENST00000612672 ZNF142P52746 1687 aaPredicted RBP38.33■■■■□ 3.73
MMP28-203ENST00000612672 DISP3Q9P2K9 1392 aa38.31■■■■□ 3.72
MMP28-203ENST00000612672 KIAA1107Q9UPP5 1409 aa38.3■■■■□ 3.72
MMP28-203ENST00000612672 A2MP01023 1474 aa38.29■■■■□ 3.72
MMP28-203ENST00000612672 TIAM1Q13009 1591 aa38.25■■■■□ 3.71
MMP28-203ENST00000612672 SPATA31D1Q6ZQQ2 1576 aa38.24■■■■□ 3.71
MMP28-203ENST00000612672 IQSEC2Q5JU85 1478 aa38.24■■■■□ 3.71
MMP28-203ENST00000612672 PLEKHH2Q8IVE3 1493 aa38.24■■■■□ 3.71
MMP28-203ENST00000612672 CFDP1Q9UEE9 299 aaPredicted RBP38.23■■■■□ 3.71
MMP28-203ENST00000612672 PTPRKQ15262 1439 aa38.22■■■■□ 3.71
MMP28-203ENST00000612672 CCNB3Q8WWL7 1395 aa38.22■■■■□ 3.71
MMP28-203ENST00000612672 NCKAP5LQ9HCH0 1330 aa38.22■■■■□ 3.71
MMP28-203ENST00000612672 ADGBQ8N7X0 1667 aa38.22■■■■□ 3.71
MMP28-203ENST00000612672 CEP170BQ9Y4F5 1589 aaPredicted RBP38.22■■■■□ 3.71
MMP28-203ENST00000612672 ZNF644Q9H582 1327 aaPredicted RBP38.17■■■■□ 3.7
MMP28-203ENST00000612672 MTUS2Q5JR59 1369 aa38.15■■■■□ 3.7
MMP28-203ENST00000612672 TCOF1Q13428 1488 aaKnown RBP38.15■■■■□ 3.7
MMP28-203ENST00000612672 MBD5Q9P267 1494 aa38.15■■■■□ 3.7
MMP28-203ENST00000612672 ZNF335Q9H4Z2 1342 aaPredicted RBP38.14■■■■□ 3.7
MMP28-203ENST00000612672 PLA2R1Q13018 1463 aa38.14■■■■□ 3.7
MMP28-203ENST00000612672 GGT6Q6P531 493 aa38.12■■■■□ 3.69
MMP28-203ENST00000612672 EHBP1L1Q8N3D4 1523 aa38.1■■■■□ 3.69
MMP28-203ENST00000612672 DNMT1P26358 1616 aaKnown RBP38.04■■■■□ 3.68
MMP28-203ENST00000612672 SOCS7O14512 581 aa38.02■■■■□ 3.68
MMP28-203ENST00000612672 CEP162Q5TB80 1403 aa38■■■■□ 3.67
MMP28-203ENST00000612672 A2ML1A8K2U0 1454 aa37.99■■■■□ 3.67
MMP28-203ENST00000612672 PKD2Q13563 968 aa37.99■■■■□ 3.67
MMP28-203ENST00000612672 RTEL1-TNFRSF6BF6WH68 1400 aa37.97■■■■□ 3.67
MMP28-203ENST00000612672 POLR1AO95602 1720 aaPredicted RBP37.95■■■■□ 3.67
MMP28-203ENST00000612672 NEURL4Q96JN8 1562 aa37.95■■■■□ 3.67
MMP28-203ENST00000612672 DHX29Q7Z478 1369 aaKnown RBP37.94■■■■□ 3.66
MMP28-203ENST00000612672 PPP6R1Q9UPN7 881 aa37.92■■■■□ 3.66
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms