RNA–Protein interactions for RNA: ENST00000611132.4

VPS36-207, Transcript of vacuolar protein sorting 36 homolog, humanhuman

TSL 1 (best) BASIC

Gene VPS36, Length 4,607 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS36-207ENST00000611132 CHMP7Q8WUX9 453 aaPredicted RBP18.89■□□□□ 0.61
VPS36-207ENST00000611132 UACAQ9BZF9 1416 aa18.89■□□□□ 0.61
VPS36-207ENST00000611132 CNTLNQ9NXG0 1405 aa18.88■□□□□ 0.61
VPS36-207ENST00000611132 CCDC7Q96M83 1385 aa18.87■□□□□ 0.61
VPS36-207ENST00000611132 EIF4G1Q04637 1599 aaKnown RBP18.87■□□□□ 0.61
VPS36-207ENST00000611132 GSE1Q14687 1217 aa18.87■□□□□ 0.61
VPS36-207ENST00000611132 NEUROD2Q15784 382 aa18.87■□□□□ 0.61
VPS36-207ENST00000611132 MS4A1P11836 297 aa18.87■□□□□ 0.61
VPS36-207ENST00000611132 FTSJ3Q8IY81 847 aaKnown RBP18.86■□□□□ 0.61
VPS36-207ENST00000611132 WDR97A6NE52 1622 aa18.85■□□□□ 0.61
VPS36-207ENST00000611132 KIF15Q9NS87 1388 aa18.84■□□□□ 0.61
VPS36-207ENST00000611132 MYBBP1AQ9BQG0 1328 aaKnown RBP18.84■□□□□ 0.61
VPS36-207ENST00000611132 FGD6Q6ZV73 1430 aa18.83■□□□□ 0.61
VPS36-207ENST00000611132 IGF1RP08069 1367 aa18.83■□□□□ 0.6
VPS36-207ENST00000611132 PAK3O75914 559 aaPredicted RBP18.83■□□□□ 0.6
VPS36-207ENST00000611132 CFAP53Q96M91 514 aa18.83■□□□□ 0.6
VPS36-207ENST00000611132 SLKQ9H2G2 1235 aaPredicted RBP18.82■□□□□ 0.6
VPS36-207ENST00000611132 MYH16Q9H6N6 1097 aa18.82■□□□□ 0.6
VPS36-207ENST00000611132 PRXQ9BXM0 1461 aa18.8■□□□□ 0.6
VPS36-207ENST00000611132 KIF7Q2M1P5 1343 aa18.8■□□□□ 0.6
VPS36-207ENST00000611132 NCLP19338 710 aaKnown RBP18.78■□□□□ 0.6
VPS36-207ENST00000611132 SLC4A3P48751 1232 aa18.78■□□□□ 0.6
VPS36-207ENST00000611132 PNNQ9H307 717 aaKnown RBP18.78■□□□□ 0.6
VPS36-207ENST00000611132 NUP155O75694 1391 aa18.77■□□□□ 0.6
VPS36-207ENST00000611132 USP47Q96K76 1375 aa18.77■□□□□ 0.6
VPS36-207ENST00000611132 PLIN1O60240 522 aa18.76■□□□□ 0.59
VPS36-207ENST00000611132 HSCBQ8IWL3 235 aa18.76■□□□□ 0.59
VPS36-207ENST00000611132 FAM161AQ3B820 660 aa18.76■□□□□ 0.59
VPS36-207ENST00000611132 SPRYD3Q8NCJ5 442 aa18.76■□□□□ 0.59
VPS36-207ENST00000611132 SLC24A1O60721 1099 aa18.76■□□□□ 0.59
VPS36-207ENST00000611132 CENPQQ7L2Z9 268 aaPredicted RBP18.76■□□□□ 0.59
VPS36-207ENST00000611132 ST20-MTHFSA0A0A6YYL1 179 aa18.75■□□□□ 0.59
VPS36-207ENST00000611132 GOLGA2Q08379 1002 aa18.75■□□□□ 0.59
VPS36-207ENST00000611132 HSP90AB1P08238 724 aaKnown RBP18.74■□□□□ 0.59
VPS36-207ENST00000611132 TDRD9Q8NDG6 1382 aaKnown RBP18.74■□□□□ 0.59
VPS36-207ENST00000611132 CRBNQ96SW2 442 aa18.74■□□□□ 0.59
VPS36-207ENST00000611132 ANKRD30AQ9BXX3 1397 aa18.73■□□□□ 0.59
VPS36-207ENST00000611132 CADPSQ9ULU8 1353 aa18.73■□□□□ 0.59
VPS36-207ENST00000611132 RSPH6AQ9H0K4 717 aa18.73■□□□□ 0.59
VPS36-207ENST00000611132 GZF1Q9H116 711 aaPredicted RBP18.72■□□□□ 0.59
VPS36-207ENST00000611132 MYOM3Q5VTT5 1437 aa18.71■□□□□ 0.59
VPS36-207ENST00000611132 CCDC184Q52MB2 194 aa18.7■□□□□ 0.58
VPS36-207ENST00000611132 GOLGA6L3A6NEY3 463 aa18.7■□□□□ 0.58
VPS36-207ENST00000611132 TNNT2P45379 298 aaPredicted RBP18.69■□□□□ 0.58
VPS36-207ENST00000611132 ARID4BQ4LE39 1312 aaPredicted RBP18.69■□□□□ 0.58
VPS36-207ENST00000611132 PTMAP06454 111 aaKnown RBP18.68■□□□□ 0.58
VPS36-207ENST00000611132 AKNAQ7Z591 1439 aa18.68■□□□□ 0.58
VPS36-207ENST00000611132 ANO8Q9HCE9 1232 aaPredicted RBP18.67■□□□□ 0.58
VPS36-207ENST00000611132 IL27Q8NEV9 243 aa18.67■□□□□ 0.58
VPS36-207ENST00000611132 NFKBIBQ15653 356 aa18.67■□□□□ 0.58
VPS36-207ENST00000611132 TIAM1Q13009 1591 aa18.66■□□□□ 0.58
VPS36-207ENST00000611132 RWDD1Q9H446 243 aaPredicted RBP18.66■□□□□ 0.58
VPS36-207ENST00000611132 CASKIN1Q8WXD9 1431 aa18.65■□□□□ 0.58
VPS36-207ENST00000611132 MAPK8IP3Q9UPT6 1336 aa18.65■□□□□ 0.58
VPS36-207ENST00000611132 CUX1P39880 1505 aa18.65■□□□□ 0.58
VPS36-207ENST00000611132 TOP2BQ02880 1626 aa18.65■□□□□ 0.58
VPS36-207ENST00000611132 PMFBP1Q8TBY8 1022 aa18.64■□□□□ 0.58
VPS36-207ENST00000611132 SMG6Q86US8 1419 aaKnown RBP18.63■□□□□ 0.57
VPS36-207ENST00000611132 MSNP26038 577 aaKnown RBP18.62■□□□□ 0.57
VPS36-207ENST00000611132 DNTTIP2Q5QJE6 756 aaKnown RBP18.62■□□□□ 0.57
VPS36-207ENST00000611132 HFM1A2PYH4 1435 aa18.62■□□□□ 0.57
VPS36-207ENST00000611132 GBP4Q96PP9 640 aa18.62■□□□□ 0.57
VPS36-207ENST00000611132 CHMP4BQ9H444 224 aaKnown RBP18.61■□□□□ 0.57
VPS36-207ENST00000611132 PANK3Q9H999 370 aa18.61■□□□□ 0.57
VPS36-207ENST00000611132 FGD5Q6ZNL6 1462 aa18.6■□□□□ 0.57
VPS36-207ENST00000611132 CASC1Q6TDU7 716 aa18.6■□□□□ 0.57
VPS36-207ENST00000611132 NCOA2Q15596 1464 aa18.6■□□□□ 0.57
VPS36-207ENST00000611132 FYCO1Q9BQS8 1478 aa18.6■□□□□ 0.57
VPS36-207ENST00000611132 MORC1Q86VD1 984 aa18.59■□□□□ 0.57
VPS36-207ENST00000611132 BACH2Q9BYV9 841 aa18.59■□□□□ 0.57
VPS36-207ENST00000611132 BRD4O60885 1362 aaPredicted RBP18.59■□□□□ 0.57
VPS36-207ENST00000611132 CCDC146Q8IYE0 955 aa18.59■□□□□ 0.57
VPS36-207ENST00000611132 CENPJQ9HC77 1338 aaPredicted RBP18.59■□□□□ 0.57
VPS36-207ENST00000611132 STAG3Q9UJ98 1225 aa18.58■□□□□ 0.57
VPS36-207ENST00000611132 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP18.58■□□□□ 0.56
VPS36-207ENST00000611132 BRPF3Q9ULD4 1205 aa18.57■□□□□ 0.56
VPS36-207ENST00000611132 PTMSP20962 102 aa18.57■□□□□ 0.56
VPS36-207ENST00000611132 U2SURPO15042 1029 aaKnown RBP18.56■□□□□ 0.56
VPS36-207ENST00000611132 MFAP1P55081 439 aaKnown RBP18.56■□□□□ 0.56
VPS36-207ENST00000611132 PNISRQ8TF01 805 aaKnown RBP18.56■□□□□ 0.56
VPS36-207ENST00000611132 NBPF8Q3BBV2 869 aa18.56■□□□□ 0.56
VPS36-207ENST00000611132 CGNL1Q0VF96 1302 aa18.53■□□□□ 0.56
VPS36-207ENST00000611132 HSP90AA2PQ14568 343 aaPredicted RBP18.53■□□□□ 0.56
VPS36-207ENST00000611132 CLUAP1Q96AJ1 413 aa18.52■□□□□ 0.56
VPS36-207ENST00000611132 CDCA7LQ96GN5 454 aa18.51■□□□□ 0.55
VPS36-207ENST00000611132 PRKCSHP14314 528 aaPredicted RBP18.5■□□□□ 0.55
VPS36-207ENST00000611132 E9PSI1 815 aa18.5■□□□□ 0.55
VPS36-207ENST00000611132 IPO8O15397 1037 aaKnown RBP18.49■□□□□ 0.55
VPS36-207ENST00000611132 MAPKBP1O60336 1514 aa18.49■□□□□ 0.55
VPS36-207ENST00000611132 ITPRIPQ8IWB1 547 aa18.48■□□□□ 0.55
VPS36-207ENST00000611132 FANCD2Q9BXW9 1451 aa18.48■□□□□ 0.55
VPS36-207ENST00000611132 DDX11L8A8MPP1 907 aa18.48■□□□□ 0.55
VPS36-207ENST00000611132 CCDC144AA2RUR9 1427 aa18.48■□□□□ 0.55
VPS36-207ENST00000611132 NAIPQ13075 1403 aa18.48■□□□□ 0.55
VPS36-207ENST00000611132 MAP3K1Q13233 1512 aa18.48■□□□□ 0.55
VPS36-207ENST00000611132 COG6Q9Y2V7 657 aa18.47■□□□□ 0.55
VPS36-207ENST00000611132 HNRNPMP52272 730 aaKnown RBP eCLIP18.47■□□□□ 0.55
VPS36-207ENST00000611132 CFTRP13569 1480 aa18.47■□□□□ 0.55
VPS36-207ENST00000611132 FRAT2O75474 233 aaPredicted RBP18.46■□□□□ 0.55
VPS36-207ENST00000611132 MIA2Q96PC5 1412 aa18.46■□□□□ 0.55
Retrieved 100 of 20,778 RNA–protein pairs in 60.3 ms