RNA–Protein interactions for RNA: ENST00000610401.4

SSBP3-216, Transcript of single stranded DNA binding protein 3, humanhuman

TSL 5 BASIC

Gene SSBP3, Length 3,168 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSBP3-216ENST00000610401 URB2Q14146 1524 aaKnown RBP27.76■■■□□ 2.03
SSBP3-216ENST00000610401 GRIN2BQ13224 1484 aa27.73■■■□□ 2.03
SSBP3-216ENST00000610401 ZBED9Q6R2W3 1325 aa27.72■■■□□ 2.03
SSBP3-216ENST00000610401 PRDM2Q13029 1718 aa27.71■■■□□ 2.03
SSBP3-216ENST00000610401 LRRIQ1Q96JM4 1722 aa27.7■■■□□ 2.03
SSBP3-216ENST00000610401 TMC1Q8TDI8 760 aa27.7■■■□□ 2.03
SSBP3-216ENST00000610401 CTTNBP2Q8WZ74 1663 aa27.68■■■□□ 2.02
SSBP3-216ENST00000610401 SUPT6HQ7KZ85 1726 aaKnown RBP27.68■■■□□ 2.02
SSBP3-216ENST00000610401 PKD2Q13563 968 aa27.67■■■□□ 2.02
SSBP3-216ENST00000610401 PDS5BQ9NTI5 1447 aa27.67■■■□□ 2.02
SSBP3-216ENST00000610401 DEKP35659 375 aaKnown RBP27.66■■■□□ 2.02
SSBP3-216ENST00000610401 NCOA1Q15788 1441 aa27.64■■■□□ 2.01
SSBP3-216ENST00000610401 CFDP1Q9UEE9 299 aaPredicted RBP27.64■■■□□ 2.01
SSBP3-216ENST00000610401 EHBP1L1Q8N3D4 1523 aa27.62■■■□□ 2.01
SSBP3-216ENST00000610401 UGGT2Q9NYU1 1516 aa27.62■■■□□ 2.01
SSBP3-216ENST00000610401 ANKRD30BQ9BXX2 1392 aa27.61■■■□□ 2.01
SSBP3-216ENST00000610401 NOP58Q9Y2X3 529 aaKnown RBP27.61■■■□□ 2.01
SSBP3-216ENST00000610401 CUL7Q14999 1698 aa27.6■■■□□ 2.01
SSBP3-216ENST00000610401 EPRSP07814 1512 aaKnown RBP27.58■■■□□ 2.01
SSBP3-216ENST00000610401 CARD11Q9BXL7 1154 aa27.58■■■□□ 2.01
SSBP3-216ENST00000610401 THOC2Q8NI27 1593 aaKnown RBP27.56■■■□□ 2
SSBP3-216ENST00000610401 RGL3Q3MIN7 710 aa27.55■■■□□ 2
SSBP3-216ENST00000610401 SKAP1Q86WV1 359 aa27.55■■■□□ 2
SSBP3-216ENST00000610401 NUDCQ9Y266 331 aa27.55■■■□□ 2
SSBP3-216ENST00000610401 USP47Q96K76 1375 aa27.54■■■□□ 2
SSBP3-216ENST00000610401 ST20-MTHFSA0A0A6YYL1 179 aa27.52■■■□□ 2
SSBP3-216ENST00000610401 DCAF11Q8TEB1 546 aa27.51■■□□□ 1.99
SSBP3-216ENST00000610401 ANP32AP39687 249 aaKnown RBP27.5■■□□□ 1.99
SSBP3-216ENST00000610401 SAMD9Q5K651 1589 aa27.49■■□□□ 1.99
SSBP3-216ENST00000610401 ERICH6BQ5W0A0 696 aa27.49■■□□□ 1.99
SSBP3-216ENST00000610401 ABCC5O15440 1437 aa27.49■■□□□ 1.99
SSBP3-216ENST00000610401 DAPK1P53355 1430 aa27.49■■□□□ 1.99
SSBP3-216ENST00000610401 EXOC6Q8TAG9 804 aa27.46■■□□□ 1.99
SSBP3-216ENST00000610401 RPRD2Q5VT52 1461 aaKnown RBP27.46■■□□□ 1.99
SSBP3-216ENST00000610401 PLIN1O60240 522 aa27.45■■□□□ 1.99
SSBP3-216ENST00000610401 LAS1LQ9Y4W2 734 aaKnown RBP27.45■■□□□ 1.98
SSBP3-216ENST00000610401 PRG4Q92954 1404 aaPredicted RBP27.45■■□□□ 1.98
SSBP3-216ENST00000610401 ZBTB47Q9UFB7 747 aaPredicted RBP27.44■■□□□ 1.98
SSBP3-216ENST00000610401 LAMC3Q9Y6N6 1575 aa27.43■■□□□ 1.98
SSBP3-216ENST00000610401 GRWD1Q9BQ67 446 aaKnown RBP eCLIP27.43■■□□□ 1.98
SSBP3-216ENST00000610401 PNISRQ8TF01 805 aaKnown RBP27.42■■□□□ 1.98
SSBP3-216ENST00000610401 CC2D1BQ5T0F9 858 aaKnown RBP27.42■■□□□ 1.98
SSBP3-216ENST00000610401 DHX29Q7Z478 1369 aaKnown RBP27.39■■□□□ 1.98
SSBP3-216ENST00000610401 CDCA7LQ96GN5 454 aa27.39■■□□□ 1.98
SSBP3-216ENST00000610401 TEX14Q8IWB6 1497 aa27.39■■□□□ 1.97
SSBP3-216ENST00000610401 TCOF1Q13428 1488 aaKnown RBP27.38■■□□□ 1.97
SSBP3-216ENST00000610401 NUP155O75694 1391 aa27.38■■□□□ 1.97
SSBP3-216ENST00000610401 SPATA31E1Q6ZUB1 1445 aa27.38■■□□□ 1.97
SSBP3-216ENST00000610401 RTL5Q5HYW3 569 aaPredicted RBP27.37■■□□□ 1.97
SSBP3-216ENST00000610401 HECW1Q76N89 1606 aa27.36■■□□□ 1.97
SSBP3-216ENST00000610401 HNRNPMP52272 730 aaKnown RBP eCLIP27.36■■□□□ 1.971e-6■■■■□ 26.1
SSBP3-216ENST00000610401 MIA2Q96PC5 1412 aa27.35■■□□□ 1.97
SSBP3-216ENST00000610401 ARHGEF11O15085 1522 aa27.35■■□□□ 1.97
SSBP3-216ENST00000610401 RTN4Q9NQC3 1192 aaKnown RBP27.35■■□□□ 1.97
SSBP3-216ENST00000610401 ABCA5Q8WWZ7 1642 aa27.34■■□□□ 1.97
SSBP3-216ENST00000610401 CHMP7Q8WUX9 453 aaPredicted RBP27.33■■□□□ 1.97
SSBP3-216ENST00000610401 IPO9Q96P70 1041 aaKnown RBP27.33■■□□□ 1.97
SSBP3-216ENST00000610401 SMG6Q86US8 1419 aaKnown RBP27.31■■□□□ 1.96
SSBP3-216ENST00000610401 IQGAP2Q13576 1575 aa27.3■■□□□ 1.96
SSBP3-216ENST00000610401 ZNF608Q9ULD9 1512 aaPredicted RBP27.29■■□□□ 1.96
SSBP3-216ENST00000610401 GCC2Q8IWJ2 1684 aa27.28■■□□□ 1.96
SSBP3-216ENST00000610401 NBPF1Q3BBV0 1214 aa27.28■■□□□ 1.96
SSBP3-216ENST00000610401 RCAN3Q9UKA8 241 aa27.28■■□□□ 1.96
SSBP3-216ENST00000610401 TSPY4P0CV99 314 aa27.25■■□□□ 1.95
SSBP3-216ENST00000610401 TSPY10P0CW01 314 aa27.25■■□□□ 1.95
SSBP3-216ENST00000610401 RRP1P56182 461 aaKnown RBP27.25■■□□□ 1.95
SSBP3-216ENST00000610401 PZPP20742 1482 aa27.24■■□□□ 1.95
SSBP3-216ENST00000610401 PLB1Q6P1J6 1458 aa27.23■■□□□ 1.95
SSBP3-216ENST00000610401 WDR62O43379 1518 aa27.21■■□□□ 1.95
SSBP3-216ENST00000610401 NUP153P49790 1475 aaKnown RBP27.21■■□□□ 1.95
SSBP3-216ENST00000610401 SLC4A3P48751 1232 aa27.21■■□□□ 1.95
SSBP3-216ENST00000610401 ROCK1Q13464 1354 aa27.21■■□□□ 1.95
SSBP3-216ENST00000610401 ROCK2O75116 1388 aaKnown RBP27.2■■□□□ 1.95
SSBP3-216ENST00000610401 BCORL1Q5H9F3 1711 aa27.2■■□□□ 1.94
SSBP3-216ENST00000610401 KIAA1107Q9UPP5 1409 aa27.2■■□□□ 1.94
SSBP3-216ENST00000610401 PLEKHD1A6NEE1 506 aa27.19■■□□□ 1.94
SSBP3-216ENST00000610401 KIF21AQ7Z4S6 1674 aa27.18■■□□□ 1.94
SSBP3-216ENST00000610401 ANKRD50Q9ULJ7 1429 aa27.17■■□□□ 1.94
SSBP3-216ENST00000610401 MYBBP1AQ9BQG0 1328 aaKnown RBP27.17■■□□□ 1.94
SSBP3-216ENST00000610401 CAMSAP2Q08AD1 1489 aa27.16■■□□□ 1.94
SSBP3-216ENST00000610401 ANKRD30AQ9BXX3 1397 aa27.16■■□□□ 1.94
SSBP3-216ENST00000610401 PDE4AP27815 886 aa27.15■■□□□ 1.94
SSBP3-216ENST00000610401 NEFMP07197 916 aa27.15■■□□□ 1.94
SSBP3-216ENST00000610401 KIF15Q9NS87 1388 aa27.14■■□□□ 1.93
SSBP3-216ENST00000610401 C20orf194Q5TEA3 1177 aa27.1■■□□□ 1.93
SSBP3-216ENST00000610401 IL27Q8NEV9 243 aa27.1■■□□□ 1.93
SSBP3-216ENST00000610401 CRBNQ96SW2 442 aa27.1■■□□□ 1.93
SSBP3-216ENST00000610401 JPH4Q96JJ6 628 aa27.09■■□□□ 1.93
SSBP3-216ENST00000610401 RNF123Q5XPI4 1314 aa27.09■■□□□ 1.93
SSBP3-216ENST00000610401 TARBP1Q13395 1621 aaKnown RBP27.09■■□□□ 1.93
SSBP3-216ENST00000610401 PANK3Q9H999 370 aa27.08■■□□□ 1.93
SSBP3-216ENST00000610401 DISP1Q96F81 1524 aa27.07■■□□□ 1.92
SSBP3-216ENST00000610401 DNMT1P26358 1616 aaKnown RBP27.07■■□□□ 1.92
SSBP3-216ENST00000610401 GPATCH8Q9UKJ3 1502 aaKnown RBP27.06■■□□□ 1.92
SSBP3-216ENST00000610401 NLRP13Q86W25 1043 aa27.06■■□□□ 1.92
SSBP3-216ENST00000610401 RALBP1Q15311 655 aa27.05■■□□□ 1.92
SSBP3-216ENST00000610401 TROQ12816 1431 aaPredicted RBP27.04■■□□□ 1.92
SSBP3-216ENST00000610401 KTN1Q86UP2 1357 aaKnown RBP27.03■■□□□ 1.92
SSBP3-216ENST00000610401 MYT1LQ9UL68 1186 aa27.01■■□□□ 1.91
SSBP3-216ENST00000610401 KIF14Q15058 1648 aa27■■□□□ 1.91
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms