RNA–Protein interactions for RNA: ENST00000609684.2

PCDHB16-201, Transcript of protocadherin beta 16, humanhuman

APPRIS P1 BASIC

Gene PCDHB16, Length 5,001 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHB16-201ENST00000609684 HNRNPMP52272 730 aaKnown RBP eCLIP18.43■□□□□ 0.54
PCDHB16-201ENST00000609684 LMOD2Q6P5Q4 547 aa18.42■□□□□ 0.54
PCDHB16-201ENST00000609684 GOLGA6L22H0YM25 854 aa18.41■□□□□ 0.54
PCDHB16-201ENST00000609684 NOP58Q9Y2X3 529 aaKnown RBP18.41■□□□□ 0.54
PCDHB16-201ENST00000609684 CCDC18Q5T9S5 1454 aa18.41■□□□□ 0.54
PCDHB16-201ENST00000609684 MS4A1P11836 297 aa18.41■□□□□ 0.54
PCDHB16-201ENST00000609684 HAP1P54257 671 aaPredicted RBP18.4■□□□□ 0.54
PCDHB16-201ENST00000609684 CASC1Q6TDU7 716 aa18.4■□□□□ 0.54
PCDHB16-201ENST00000609684 PNNQ9H307 717 aaKnown RBP18.4■□□□□ 0.54
PCDHB16-201ENST00000609684 STK26Q9P289 416 aa18.39■□□□□ 0.53
PCDHB16-201ENST00000609684 RALBP1Q15311 655 aa18.38■□□□□ 0.53
PCDHB16-201ENST00000609684 FANCD2Q9BXW9 1451 aa18.38■□□□□ 0.53
PCDHB16-201ENST00000609684 NCLP19338 710 aaKnown RBP18.37■□□□□ 0.53
PCDHB16-201ENST00000609684 JPH4Q96JJ6 628 aa18.37■□□□□ 0.53
PCDHB16-201ENST00000609684 CHMP4BQ9H444 224 aaKnown RBP18.37■□□□□ 0.53
PCDHB16-201ENST00000609684 SOX12O15370 315 aa18.36■□□□□ 0.53
PCDHB16-201ENST00000609684 KIF3BO15066 747 aa18.34■□□□□ 0.53
PCDHB16-201ENST00000609684 RBM19Q9Y4C8 960 aaKnown RBP18.34■□□□□ 0.53
PCDHB16-201ENST00000609684 HDGFP51858 240 aaKnown RBP18.33■□□□□ 0.53
PCDHB16-201ENST00000609684 RCAN3Q9UKA8 241 aa18.33■□□□□ 0.53
PCDHB16-201ENST00000609684 TRIM44Q96DX7 344 aaPredicted RBP18.32■□□□□ 0.52
PCDHB16-201ENST00000609684 RSPH4AQ5TD94 716 aa18.31■□□□□ 0.52
PCDHB16-201ENST00000609684 ERICH6BQ5W0A0 696 aa18.31■□□□□ 0.52
PCDHB16-201ENST00000609684 SPAG9O60271 1321 aaKnown RBP18.29■□□□□ 0.52
PCDHB16-201ENST00000609684 HDGFL2Q7Z4V5 671 aaPredicted RBP18.29■□□□□ 0.52
PCDHB16-201ENST00000609684 U2AF1L5P0DN76 240 aaPredicted RBP18.28■□□□□ 0.52
PCDHB16-201ENST00000609684 U2AF1Q01081 240 aaKnown RBP eCLIP18.28■□□□□ 0.52
PCDHB16-201ENST00000609684 IGF1RP08069 1367 aa18.28■□□□□ 0.52
PCDHB16-201ENST00000609684 FGD5Q6ZNL6 1462 aa18.26■□□□□ 0.51
PCDHB16-201ENST00000609684 EIF3AQ14152 1382 aaKnown RBP18.26■□□□□ 0.51
PCDHB16-201ENST00000609684 NLRP13Q86W25 1043 aa18.25■□□□□ 0.51
PCDHB16-201ENST00000609684 TPRNQ4KMQ1 711 aa18.25■□□□□ 0.51
PCDHB16-201ENST00000609684 HSP90AB1P08238 724 aaKnown RBP18.24■□□□□ 0.51
PCDHB16-201ENST00000609684 OS9Q13438 667 aaPredicted RBP18.24■□□□□ 0.51
PCDHB16-201ENST00000609684 ST20-MTHFSA0A0A6YYL1 179 aa18.23■□□□□ 0.51
PCDHB16-201ENST00000609684 TRHP20396 242 aaPredicted RBP18.21■□□□□ 0.51
PCDHB16-201ENST00000609684 GLIPR1L2Q4G1C9 344 aa18.21■□□□□ 0.51
PCDHB16-201ENST00000609684 RAD54L2Q9Y4B4 1467 aa18.2■□□□□ 0.5
PCDHB16-201ENST00000609684 NUTM2DQ5VT03 806 aaPredicted RBP18.19■□□□□ 0.5
PCDHB16-201ENST00000609684 CCDC144AA2RUR9 1427 aa18.19■□□□□ 0.5
PCDHB16-201ENST00000609684 IPO8O15397 1037 aaKnown RBP18.18■□□□□ 0.5
PCDHB16-201ENST00000609684 RTF1Q92541 710 aaKnown RBP18.18■□□□□ 0.5
PCDHB16-201ENST00000609684 WASHC2CQ9Y4E1 1318 aa18.18■□□□□ 0.5
PCDHB16-201ENST00000609684 GAPVD1Q14C86 1478 aa18.18■□□□□ 0.5
PCDHB16-201ENST00000609684 PTMAP06454 111 aaKnown RBP18.17■□□□□ 0.5
PCDHB16-201ENST00000609684 GOLGA2Q08379 1002 aa18.17■□□□□ 0.5
PCDHB16-201ENST00000609684 HSCBQ8IWL3 235 aa18.17■□□□□ 0.5
PCDHB16-201ENST00000609684 CCDC146Q8IYE0 955 aa18.17■□□□□ 0.5
PCDHB16-201ENST00000609684 TSHZ2Q9NRE2 1034 aa18.17■□□□□ 0.5
PCDHB16-201ENST00000609684 KIF21BO75037 1637 aa18.16■□□□□ 0.5
PCDHB16-201ENST00000609684 KIF15Q9NS87 1388 aa18.16■□□□□ 0.5
PCDHB16-201ENST00000609684 PTPRGP23470 1445 aa18.16■□□□□ 0.5
PCDHB16-201ENST00000609684 PRKRIP1Q9H875 184 aaPredicted RBP18.16■□□□□ 0.5
PCDHB16-201ENST00000609684 TCERG1O14776 1098 aaKnown RBP18.15■□□□□ 0.5
PCDHB16-201ENST00000609684 ITPRIPQ8IWB1 547 aa18.14■□□□□ 0.5
PCDHB16-201ENST00000609684 KCNJ4P48050 445 aa18.14■□□□□ 0.49
PCDHB16-201ENST00000609684 PDE3BQ13370 1112 aa18.14■□□□□ 0.49
PCDHB16-201ENST00000609684 ZRSR1Q15695 479 aaKnown RBP18.14■□□□□ 0.49
PCDHB16-201ENST00000609684 MYBBP1AQ9BQG0 1328 aaKnown RBP18.14■□□□□ 0.49
PCDHB16-201ENST00000609684 SPRYD3Q8NCJ5 442 aa18.13■□□□□ 0.49
PCDHB16-201ENST00000609684 TERF2IPQ9NYB0 399 aa18.13■□□□□ 0.49
PCDHB16-201ENST00000609684 TRAK1Q9UPV9 953 aa18.13■□□□□ 0.49
PCDHB16-201ENST00000609684 PANK3Q9H999 370 aa18.13■□□□□ 0.49
PCDHB16-201ENST00000609684 APBB1O00213 710 aa18.13■□□□□ 0.49
PCDHB16-201ENST00000609684 CALD1Q05682 793 aaKnown RBP18.13■□□□□ 0.49
PCDHB16-201ENST00000609684 FGD6Q6ZV73 1430 aa18.13■□□□□ 0.49
PCDHB16-201ENST00000609684 RWDD1Q9H446 243 aaPredicted RBP18.12■□□□□ 0.49
PCDHB16-201ENST00000609684 PHLDB1Q86UU1 1377 aa18.12■□□□□ 0.49
PCDHB16-201ENST00000609684 USP47Q96K76 1375 aa18.12■□□□□ 0.49
PCDHB16-201ENST00000609684 NCAPD3P42695 1498 aa18.11■□□□□ 0.49
PCDHB16-201ENST00000609684 FGD1P98174 961 aa18.11■□□□□ 0.49
PCDHB16-201ENST00000609684 RTN4Q9NQC3 1192 aaKnown RBP18.11■□□□□ 0.49
PCDHB16-201ENST00000609684 PAK3O75914 559 aaPredicted RBP18.1■□□□□ 0.49
PCDHB16-201ENST00000609684 SMC4Q9NTJ3 1288 aa18.09■□□□□ 0.49
PCDHB16-201ENST00000609684 MYOM3Q5VTT5 1437 aa18.09■□□□□ 0.49
PCDHB16-201ENST00000609684 CLUAP1Q96AJ1 413 aa18.09■□□□□ 0.49
PCDHB16-201ENST00000609684 ZNF644Q9H582 1327 aaPredicted RBP18.08■□□□□ 0.48
PCDHB16-201ENST00000609684 LRRC9Q6ZRR7 1453 aa18.07■□□□□ 0.48
PCDHB16-201ENST00000609684 TAOK2Q9UL54 1235 aa18.07■□□□□ 0.48
PCDHB16-201ENST00000609684 CENPJQ9HC77 1338 aaPredicted RBP18.07■□□□□ 0.48
PCDHB16-201ENST00000609684 PLCB2Q00722 1185 aa18.06■□□□□ 0.48
PCDHB16-201ENST00000609684 MCCP23508 829 aa18.05■□□□□ 0.48
PCDHB16-201ENST00000609684 DEKP35659 375 aaKnown RBP18.05■□□□□ 0.48
PCDHB16-201ENST00000609684 PMFBP1Q8TBY8 1022 aa18.05■□□□□ 0.48
PCDHB16-201ENST00000609684 DNTTIP2Q5QJE6 756 aaKnown RBP18.05■□□□□ 0.48
PCDHB16-201ENST00000609684 CFAP44Q96MT7 982 aa18.04■□□□□ 0.48
PCDHB16-201ENST00000609684 NAP1L2Q9ULW6 460 aaPredicted RBP18.04■□□□□ 0.48
PCDHB16-201ENST00000609684 SUGP2Q8IX01 1082 aaKnown RBP eCLIP18.03■□□□□ 0.48
PCDHB16-201ENST00000609684 RRP7AQ9Y3A4 280 aaKnown RBP18.03■□□□□ 0.48
PCDHB16-201ENST00000609684 ZBED9Q6R2W3 1325 aa18.03■□□□□ 0.48
PCDHB16-201ENST00000609684 UACAQ9BZF9 1416 aa18.03■□□□□ 0.48
PCDHB16-201ENST00000609684 CUX1P39880 1505 aa18.02■□□□□ 0.48
PCDHB16-201ENST00000609684 SLKQ9H2G2 1235 aaPredicted RBP18.01■□□□□ 0.47
PCDHB16-201ENST00000609684 ARAP1Q96P48 1450 aa18.01■□□□□ 0.47
PCDHB16-201ENST00000609684 AQRO60306 1485 aaKnown RBP eCLIP18.01■□□□□ 0.47
PCDHB16-201ENST00000609684 SYNJ1O43426 1573 aa18.01■□□□□ 0.47
PCDHB16-201ENST00000609684 NPHP1O15259 732 aa18■□□□□ 0.47
PCDHB16-201ENST00000609684 CDK11BP21127 795 aaKnown RBP18■□□□□ 0.47
PCDHB16-201ENST00000609684 CASKIN1Q8WXD9 1431 aa18■□□□□ 0.47
PCDHB16-201ENST00000609684 NUTM2FA1L443 756 aa17.99■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms