RNA–Protein interactions for RNA: ENST00000606749.1

CUX1-219, Transcript of cut like homeobox 1, humanhuman

TSL 4

Gene CUX1, Length 601 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-219ENST00000606749 ARHGEF40Q8TER5 1519 aa12.38□□□□□ -0.43
CUX1-219ENST00000606749 KIF14Q15058 1648 aa12.38□□□□□ -0.43
CUX1-219ENST00000606749 ZFYVE16Q7Z3T8 1539 aa12.37□□□□□ -0.43
CUX1-219ENST00000606749 LRRIQ1Q96JM4 1722 aa12.37□□□□□ -0.43
CUX1-219ENST00000606749 AFAP1Q8N556 730 aa12.37□□□□□ -0.43
CUX1-219ENST00000606749 ILDR1Q86SU0 546 aaPredicted RBP12.36□□□□□ -0.43
CUX1-219ENST00000606749 MYO5CQ9NQX4 1742 aa12.36□□□□□ -0.43
CUX1-219ENST00000606749 CCDC18Q5T9S5 1454 aa12.35□□□□□ -0.43
CUX1-219ENST00000606749 MLECQ14165 292 aa12.35□□□□□ -0.43
CUX1-219ENST00000606749 MADDQ8WXG6 1647 aa12.35□□□□□ -0.43
CUX1-219ENST00000606749 ARHGAP5Q13017 1502 aa12.35□□□□□ -0.43
CUX1-219ENST00000606749 ATP10AO60312 1499 aa12.34□□□□□ -0.43
CUX1-219ENST00000606749 PCF11O94913 1555 aaKnown RBP12.34□□□□□ -0.43
CUX1-219ENST00000606749 SIGLEC1Q9BZZ2 1709 aa12.33□□□□□ -0.44
CUX1-219ENST00000606749 ZNF518AQ6AHZ1 1483 aa12.33□□□□□ -0.44
CUX1-219ENST00000606749 PLPPR3Q6T4P5 718 aa12.32□□□□□ -0.44
CUX1-219ENST00000606749 MYT1LQ9UL68 1186 aa12.32□□□□□ -0.44
CUX1-219ENST00000606749 FYCO1Q9BQS8 1478 aa12.32□□□□□ -0.44
CUX1-219ENST00000606749 C9orf84Q5VXU9 1444 aa12.31□□□□□ -0.44
CUX1-219ENST00000606749 CDC42BPBQ9Y5S2 1711 aa12.31□□□□□ -0.44
CUX1-219ENST00000606749 RIMS1Q86UR5 1692 aaKnown RBP12.3□□□□□ -0.44
CUX1-219ENST00000606749 ARHGEF12Q9NZN5 1544 aa12.29□□□□□ -0.44
CUX1-219ENST00000606749 KDM5CP41229 1560 aa12.29□□□□□ -0.44
CUX1-219ENST00000606749 TRAPPC8Q9Y2L5 1435 aa12.28□□□□□ -0.44
CUX1-219ENST00000606749 ZNF777Q9ULD5 760 aaPredicted RBP12.28□□□□□ -0.44
CUX1-219ENST00000606749 LMTK3Q96Q04 1460 aa12.27□□□□□ -0.44
CUX1-219ENST00000606749 MLH3Q9UHC1 1453 aa12.27□□□□□ -0.44
CUX1-219ENST00000606749 HSPA2P54652 639 aa12.27□□□□□ -0.45
CUX1-219ENST00000606749 PREX2Q70Z35 1606 aa12.26□□□□□ -0.45
CUX1-219ENST00000606749 CEBPAP49715 358 aaPredicted RBP12.26□□□□□ -0.45
CUX1-219ENST00000606749 GPATCH8Q9UKJ3 1502 aaKnown RBP12.26□□□□□ -0.45
CUX1-219ENST00000606749 HNRNPMP52272 730 aaKnown RBP eCLIP12.25□□□□□ -0.45
CUX1-219ENST00000606749 CFDP1Q9UEE9 299 aaPredicted RBP12.25□□□□□ -0.45
CUX1-219ENST00000606749 ABCC1P33527 1531 aa12.25□□□□□ -0.45
CUX1-219ENST00000606749 CDC42BPAQ5VT25 1732 aa12.25□□□□□ -0.45
CUX1-219ENST00000606749 DIP2CQ9Y2E4 1556 aa12.23□□□□□ -0.45
CUX1-219ENST00000606749 MTUS2Q5JR59 1369 aa12.23□□□□□ -0.45
CUX1-219ENST00000606749 CCNB3Q8WWL7 1395 aa12.23□□□□□ -0.45
CUX1-219ENST00000606749 FER1L4A9Z1Z3 1794 aa12.23□□□□□ -0.45
CUX1-219ENST00000606749 CEP162Q5TB80 1403 aa12.22□□□□□ -0.45
CUX1-219ENST00000606749 ITSN2Q9NZM3 1697 aa12.22□□□□□ -0.45
CUX1-219ENST00000606749 REREQ9P2R6 1566 aa12.22□□□□□ -0.45
CUX1-219ENST00000606749 KIAA1107Q9UPP5 1409 aa12.21□□□□□ -0.45
CUX1-219ENST00000606749 SPAG9O60271 1321 aaKnown RBP12.21□□□□□ -0.45
CUX1-219ENST00000606749 LOC105371045A0A1W2PR82 267 aa12.21□□□□□ -0.45
CUX1-219ENST00000606749 ABCA6Q8N139 1617 aa12.21□□□□□ -0.46
CUX1-219ENST00000606749 SAMD9LQ8IVG5 1584 aa12.21□□□□□ -0.46
CUX1-219ENST00000606749 ESF1Q9H501 851 aaKnown RBP12.2□□□□□ -0.46
CUX1-219ENST00000606749 AGLP35573 1532 aa12.2□□□□□ -0.46
CUX1-219ENST00000606749 KIDINS220Q9ULH0 1771 aa12.2□□□□□ -0.46
CUX1-219ENST00000606749 ZNF644Q9H582 1327 aaPredicted RBP12.19□□□□□ -0.46
CUX1-219ENST00000606749 FBXO41Q8TF61 875 aa12.19□□□□□ -0.46
CUX1-219ENST00000606749 SYCP2Q9BX26 1530 aa12.18□□□□□ -0.46
CUX1-219ENST00000606749 PLEKHH2Q8IVE3 1493 aa12.18□□□□□ -0.46
CUX1-219ENST00000606749 SETD1BQ9UPS6 1966 aaKnown RBP12.16□□□□□ -0.46
CUX1-219ENST00000606749 EHBP1L1Q8N3D4 1523 aa12.14□□□□□ -0.47
CUX1-219ENST00000606749 MBD5Q9P267 1494 aa12.14□□□□□ -0.47
CUX1-219ENST00000606749 UHRF1BP1Q6BDS2 1440 aa12.13□□□□□ -0.47
CUX1-219ENST00000606749 CNTLNQ9NXG0 1405 aa12.13□□□□□ -0.47
CUX1-219ENST00000606749 ATP7AQ04656 1500 aa12.13□□□□□ -0.47
CUX1-219ENST00000606749 ZMYM3Q14202 1370 aa12.13□□□□□ -0.47
CUX1-219ENST00000606749 TIAM1Q13009 1591 aa12.13□□□□□ -0.47
CUX1-219ENST00000606749 PREX1Q8TCU6 1659 aa12.13□□□□□ -0.47
CUX1-219ENST00000606749 GGT6Q6P531 493 aa12.12□□□□□ -0.47
CUX1-219ENST00000606749 DMRT2Q9Y5R5 561 aa12.12□□□□□ -0.47
CUX1-219ENST00000606749 A2MP01023 1474 aa12.12□□□□□ -0.47
CUX1-219ENST00000606749 C3P01024 1663 aa12.12□□□□□ -0.47
CUX1-219ENST00000606749 RSPH4AQ5TD94 716 aa12.11□□□□□ -0.47
CUX1-219ENST00000606749 CERKQ8TCT0 537 aa12.11□□□□□ -0.47
CUX1-219ENST00000606749 PPP6R1Q9UPN7 881 aa12.11□□□□□ -0.47
CUX1-219ENST00000606749 INO80Q9ULG1 1556 aaPredicted RBP12.1□□□□□ -0.47
CUX1-219ENST00000606749 NCOA2Q15596 1464 aa12.1□□□□□ -0.47
CUX1-219ENST00000606749 SUPT6HQ7KZ85 1726 aaKnown RBP12.1□□□□□ -0.47
CUX1-219ENST00000606749 RTEL1-TNFRSF6BF6WH68 1400 aa12.1□□□□□ -0.47
CUX1-219ENST00000606749 VPS8Q8N3P4 1428 aa12.09□□□□□ -0.47
CUX1-219ENST00000606749 DHX29Q7Z478 1369 aaKnown RBP12.08□□□□□ -0.48
CUX1-219ENST00000606749 KANK4Q5T7N3 995 aaPredicted RBP12.08□□□□□ -0.48
CUX1-219ENST00000606749 PLXNC1O60486 1568 aa12.08□□□□□ -0.48
CUX1-219ENST00000606749 STRCQ7RTU9 1775 aa12.07□□□□□ -0.48
CUX1-219ENST00000606749 NPATQ14207 1427 aa12.07□□□□□ -0.48
CUX1-219ENST00000606749 TSPY4P0CV99 314 aa12.06□□□□□ -0.48
CUX1-219ENST00000606749 TSPY10P0CW01 314 aa12.06□□□□□ -0.48
CUX1-219ENST00000606749 LRRC9Q6ZRR7 1453 aa12.06□□□□□ -0.48
CUX1-219ENST00000606749 KIF3BO15066 747 aa12.05□□□□□ -0.48
CUX1-219ENST00000606749 CAMSAP2Q08AD1 1489 aa12.05□□□□□ -0.48
CUX1-219ENST00000606749 MROH2AA6NES4 1674 aa12.05□□□□□ -0.48
CUX1-219ENST00000606749 ADGBQ8N7X0 1667 aa12.04□□□□□ -0.48
CUX1-219ENST00000606749 CCDC141Q6ZP82 1450 aa12.04□□□□□ -0.48
CUX1-219ENST00000606749 PTPRTO14522 1441 aa12.03□□□□□ -0.48
CUX1-219ENST00000606749 PTPRKQ15262 1439 aa12.03□□□□□ -0.48
CUX1-219ENST00000606749 MAP3K1Q13233 1512 aa12.03□□□□□ -0.48
CUX1-219ENST00000606749 CLTCQ00610 1675 aaKnown RBP12.03□□□□□ -0.48
CUX1-219ENST00000606749 NCOA1Q15788 1441 aa12.02□□□□□ -0.49
CUX1-219ENST00000606749 NCKAP5LQ9HCH0 1330 aa12.01□□□□□ -0.49
CUX1-219ENST00000606749 FBXO31Q5XUX0 539 aaPredicted RBP12□□□□□ -0.49
CUX1-219ENST00000606749 WASHC2CQ9Y4E1 1318 aa12□□□□□ -0.49
CUX1-219ENST00000606749 ARHGEF5Q12774 1597 aa12□□□□□ -0.49
CUX1-219ENST00000606749 APLP2Q06481 763 aa11.99□□□□□ -0.49
CUX1-219ENST00000606749 PKD2Q13563 968 aa11.99□□□□□ -0.49
CUX1-219ENST00000606749 MIA2Q96PC5 1412 aa11.99□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 34.3 ms