RNA–Protein interactions for RNA: ENST00000602029.1

VRK3-226, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 578 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-226ENST00000602029 SETD1BQ9UPS6 1966 aaKnown RBP8.6□□□□□ -1.03
VRK3-226ENST00000602029 DENND4BO75064 1496 aaPredicted RBP8.59□□□□□ -1.03
VRK3-226ENST00000602029 UBTFP17480 764 aaKnown RBP8.59□□□□□ -1.03
VRK3-226ENST00000602029 POGZQ7Z3K3 1410 aa8.58□□□□□ -1.04
VRK3-226ENST00000602029 FANCAO15360 1455 aa8.57□□□□□ -1.04
VRK3-226ENST00000602029 NUP153P49790 1475 aaKnown RBP8.57□□□□□ -1.04
VRK3-226ENST00000602029 SAMD9Q5K651 1589 aa8.56□□□□□ -1.04
VRK3-226ENST00000602029 AKNAQ7Z591 1439 aa8.56□□□□□ -1.04
VRK3-226ENST00000602029 CEBPAP49715 358 aaPredicted RBP8.56□□□□□ -1.04
VRK3-226ENST00000602029 IQSEC2Q5JU85 1478 aa8.56□□□□□ -1.04
VRK3-226ENST00000602029 EEA1Q15075 1411 aa8.55□□□□□ -1.04
VRK3-226ENST00000602029 PTPRTO14522 1441 aa8.54□□□□□ -1.04
VRK3-226ENST00000602029 ARHGEF12Q9NZN5 1544 aa8.54□□□□□ -1.04
VRK3-226ENST00000602029 CFAP74Q9C0B2 1584 aa8.54□□□□□ -1.04
VRK3-226ENST00000602029 ESF1Q9H501 851 aaKnown RBP8.54□□□□□ -1.04
VRK3-226ENST00000602029 CDK11AQ9UQ88 783 aaPredicted RBP8.54□□□□□ -1.04
VRK3-226ENST00000602029 ZFYVE16Q7Z3T8 1539 aa8.54□□□□□ -1.04
VRK3-226ENST00000602029 CDK13Q14004 1512 aaKnown RBP8.53□□□□□ -1.04
VRK3-226ENST00000602029 ZMYM4Q5VZL5 1548 aa8.53□□□□□ -1.04
VRK3-226ENST00000602029 EFCAB5A4FU69 1503 aa8.52□□□□□ -1.05
VRK3-226ENST00000602029 SCAPERQ9BY12 1400 aa8.52□□□□□ -1.05
VRK3-226ENST00000602029 C3P01024 1663 aa8.52□□□□□ -1.05
VRK3-226ENST00000602029 HECW1Q76N89 1606 aa8.51□□□□□ -1.05
VRK3-226ENST00000602029 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP8.51□□□□□ -1.05
VRK3-226ENST00000602029 EFCAB2Q5VUJ9 269 aa8.51□□□□□ -1.05
VRK3-226ENST00000602029 DMRT2Q9Y5R5 561 aa8.51□□□□□ -1.05
VRK3-226ENST00000602029 UBAP1LF5GYI3 381 aa8.5□□□□□ -1.05
VRK3-226ENST00000602029 CLIP1P30622 1438 aa8.49□□□□□ -1.05
VRK3-226ENST00000602029 UHRF1BP1Q6BDS2 1440 aa8.49□□□□□ -1.05
VRK3-226ENST00000602029 HSPA1LP34931 641 aa8.49□□□□□ -1.05
VRK3-226ENST00000602029 FMN1Q68DA7 1419 aa8.48□□□□□ -1.05
VRK3-226ENST00000602029 ARHGAP5Q13017 1502 aa8.48□□□□□ -1.05
VRK3-226ENST00000602029 NCOA1Q15788 1441 aa8.47□□□□□ -1.05
VRK3-226ENST00000602029 C9orf84Q5VXU9 1444 aa8.47□□□□□ -1.05
VRK3-226ENST00000602029 MAGI2Q86UL8 1455 aa8.47□□□□□ -1.05
VRK3-226ENST00000602029 ZNF335Q9H4Z2 1342 aaPredicted RBP8.47□□□□□ -1.05
VRK3-226ENST00000602029 PLCH2O75038 1416 aa8.46□□□□□ -1.05
VRK3-226ENST00000602029 ATP10AO60312 1499 aa8.46□□□□□ -1.05
VRK3-226ENST00000602029 AFAP1Q8N556 730 aa8.46□□□□□ -1.06
VRK3-226ENST00000602029 ZNF777Q9ULD5 760 aaPredicted RBP8.46□□□□□ -1.06
VRK3-226ENST00000602029 KIF14Q15058 1648 aa8.46□□□□□ -1.06
VRK3-226ENST00000602029 SETD1AO15047 1707 aaKnown RBP8.45□□□□□ -1.06
VRK3-226ENST00000602029 CAMSAP1Q5T5Y3 1602 aa8.44□□□□□ -1.06
VRK3-226ENST00000602029 ZNF518AQ6AHZ1 1483 aa8.44□□□□□ -1.06
VRK3-226ENST00000602029 ALKQ9UM73 1620 aa8.43□□□□□ -1.06
VRK3-226ENST00000602029 SUPT6HQ7KZ85 1726 aaKnown RBP8.43□□□□□ -1.06
VRK3-226ENST00000602029 TROQ12816 1431 aaPredicted RBP8.43□□□□□ -1.06
VRK3-226ENST00000602029 MYO5CQ9NQX4 1742 aa8.43□□□□□ -1.06
VRK3-226ENST00000602029 RGS17Q9UGC6 210 aaPredicted RBP8.42□□□□□ -1.06
VRK3-226ENST00000602029 ARHGAP35Q9NRY4 1499 aa8.41□□□□□ -1.06
VRK3-226ENST00000602029 NCKAP5LQ9HCH0 1330 aa8.41□□□□□ -1.06
VRK3-226ENST00000602029 SCAF1Q9H7N4 1312 aaKnown RBP8.4□□□□□ -1.06
VRK3-226ENST00000602029 PIP4K2BP78356 416 aa8.4□□□□□ -1.06
VRK3-226ENST00000602029 DIP2CQ9Y2E4 1556 aa8.38□□□□□ -1.07
VRK3-226ENST00000602029 ZNF142P52746 1687 aaPredicted RBP8.37□□□□□ -1.07
VRK3-226ENST00000602029 ABCA6Q8N139 1617 aa8.37□□□□□ -1.07
VRK3-226ENST00000602029 SPAG9O60271 1321 aaKnown RBP8.37□□□□□ -1.07
VRK3-226ENST00000602029 CCDC18Q5T9S5 1454 aa8.37□□□□□ -1.07
VRK3-226ENST00000602029 TRAPPC8Q9Y2L5 1435 aa8.37□□□□□ -1.07
VRK3-226ENST00000602029 MYO3AQ8NEV4 1616 aa8.36□□□□□ -1.07
VRK3-226ENST00000602029 SRCAPQ6ZRS2 3230 aa8.35□□□□□ -1.07
VRK3-226ENST00000602029 HNRNPMP52272 730 aaKnown RBP eCLIP8.35□□□□□ -1.07
VRK3-226ENST00000602029 GGT6Q6P531 493 aa8.35□□□□□ -1.07
VRK3-226ENST00000602029 CFDP1Q9UEE9 299 aaPredicted RBP8.35□□□□□ -1.07
VRK3-226ENST00000602029 KDM5CP41229 1560 aa8.35□□□□□ -1.07
VRK3-226ENST00000602029 TCOF1Q13428 1488 aaKnown RBP8.34□□□□□ -1.07
VRK3-226ENST00000602029 STRCP1A6NGW2 1772 aa8.34□□□□□ -1.07
VRK3-226ENST00000602029 CASKIN1Q8WXD9 1431 aa8.34□□□□□ -1.07
VRK3-226ENST00000602029 CNTLNQ9NXG0 1405 aa8.34□□□□□ -1.07
VRK3-226ENST00000602029 CCNB3Q8WWL7 1395 aa8.34□□□□□ -1.07
VRK3-226ENST00000602029 ABCC1P33527 1531 aa8.34□□□□□ -1.08
VRK3-226ENST00000602029 MLH3Q9UHC1 1453 aa8.33□□□□□ -1.08
VRK3-226ENST00000602029 PREX2Q70Z35 1606 aa8.33□□□□□ -1.08
VRK3-226ENST00000602029 POLR1AO95602 1720 aaPredicted RBP8.33□□□□□ -1.08
VRK3-226ENST00000602029 POTEAQ6S8J7 498 aa8.33□□□□□ -1.08
VRK3-226ENST00000602029 REREQ9P2R6 1566 aa8.33□□□□□ -1.08
VRK3-226ENST00000602029 MROH2AA6NES4 1674 aa8.33□□□□□ -1.08
VRK3-226ENST00000602029 MTUS2Q5JR59 1369 aa8.33□□□□□ -1.08
VRK3-226ENST00000602029 SYCP2Q9BX26 1530 aa8.32□□□□□ -1.08
VRK3-226ENST00000602029 NEURL4Q96JN8 1562 aa8.31□□□□□ -1.08
VRK3-226ENST00000602029 CEP170BQ9Y4F5 1589 aaPredicted RBP8.31□□□□□ -1.08
VRK3-226ENST00000602029 ITSN2Q9NZM3 1697 aa8.31□□□□□ -1.08
VRK3-226ENST00000602029 ZMYM3Q14202 1370 aa8.31□□□□□ -1.08
VRK3-226ENST00000602029 CDC42BPBQ9Y5S2 1711 aa8.31□□□□□ -1.08
VRK3-226ENST00000602029 PLA2R1Q13018 1463 aa8.31□□□□□ -1.08
VRK3-226ENST00000602029 FYCO1Q9BQS8 1478 aa8.31□□□□□ -1.08
VRK3-226ENST00000602029 CLTCQ00610 1675 aaKnown RBP8.3□□□□□ -1.08
VRK3-226ENST00000602029 AGLP35573 1532 aa8.3□□□□□ -1.08
VRK3-226ENST00000602029 TOM1O60784 492 aa8.3□□□□□ -1.08
VRK3-226ENST00000602029 KIDINS220Q9ULH0 1771 aa8.3□□□□□ -1.08
VRK3-226ENST00000602029 LRRIQ1Q96JM4 1722 aa8.29□□□□□ -1.08
VRK3-226ENST00000602029 PPP6R1Q9UPN7 881 aa8.29□□□□□ -1.08
VRK3-226ENST00000602029 PLEKHH2Q8IVE3 1493 aa8.29□□□□□ -1.08
VRK3-226ENST00000602029 SAMD9LQ8IVG5 1584 aa8.29□□□□□ -1.08
VRK3-226ENST00000602029 VWDEQ8N2E2 1590 aa8.29□□□□□ -1.08
VRK3-226ENST00000602029 CPS1P31327 1500 aa8.29□□□□□ -1.08
VRK3-226ENST00000602029 ATP7AQ04656 1500 aa8.29□□□□□ -1.08
VRK3-226ENST00000602029 A2MP01023 1474 aa8.28□□□□□ -1.08
VRK3-226ENST00000602029 SHANK2Q9UPX8 1470 aa8.28□□□□□ -1.08
VRK3-226ENST00000602029 PKD2Q13563 968 aa8.28□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 10.2 ms