RNA–Protein interactions for RNA: ENST00000600689.1

UPF1-210, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,084 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-210ENST00000600689 CHMP7Q8WUX9 453 aaPredicted RBP25.3■■□□□ 1.64
UPF1-210ENST00000600689 HFM1A2PYH4 1435 aa25.3■■□□□ 1.64
UPF1-210ENST00000600689 FANCIQ9NVI1 1328 aa25.29■■□□□ 1.64
UPF1-210ENST00000600689 KIAA0556O60303 1618 aa25.28■■□□□ 1.64
UPF1-210ENST00000600689 NAIPQ13075 1403 aa25.28■■□□□ 1.64
UPF1-210ENST00000600689 WASHC2AQ641Q2 1341 aa25.27■■□□□ 1.64
UPF1-210ENST00000600689 FOXD1Q16676 465 aa25.25■■□□□ 1.63
UPF1-210ENST00000600689 POLR3GLQ9BT43 218 aa25.25■■□□□ 1.63
UPF1-210ENST00000600689 MRS2Q9HD23 443 aa25.24■■□□□ 1.63
UPF1-210ENST00000600689 PPP4R2Q9NY27 417 aa25.23■■□□□ 1.63
UPF1-210ENST00000600689 DEKP35659 375 aaKnown RBP25.21■■□□□ 1.63
UPF1-210ENST00000600689 CEP170Q5SW79 1584 aa25.2■■□□□ 1.63
UPF1-210ENST00000600689 NUP153P49790 1475 aaKnown RBP25.2■■□□□ 1.62
UPF1-210ENST00000600689 UACAQ9BZF9 1416 aa25.19■■□□□ 1.62
UPF1-210ENST00000600689 MAGI1Q96QZ7 1491 aaPredicted RBP25.19■■□□□ 1.62
UPF1-210ENST00000600689 SYNJ2O15056 1496 aa25.17■■□□□ 1.62
UPF1-210ENST00000600689 TCOF1Q13428 1488 aaKnown RBP25.16■■□□□ 1.62
UPF1-210ENST00000600689 C11orf95C9JLR9 678 aaPredicted RBP25.16■■□□□ 1.62
UPF1-210ENST00000600689 EIF4G2P78344 907 aaKnown RBP eCLIP25.15■■□□□ 1.62
UPF1-210ENST00000600689 ZNF644Q9H582 1327 aaPredicted RBP25.14■■□□□ 1.62
UPF1-210ENST00000600689 RAPGEF6Q8TEU7 1601 aa25.13■■□□□ 1.61
UPF1-210ENST00000600689 PLB1Q6P1J6 1458 aa25.12■■□□□ 1.61
UPF1-210ENST00000600689 PAK3O75914 559 aaPredicted RBP25.12■■□□□ 1.61
UPF1-210ENST00000600689 KDM6BO15054 1643 aa25.12■■□□□ 1.61
UPF1-210ENST00000600689 JPH4Q96JJ6 628 aa25.1■■□□□ 1.61
UPF1-210ENST00000600689 MIA2Q96PC5 1412 aa25.09■■□□□ 1.61
UPF1-210ENST00000600689 PRG4Q92954 1404 aaPredicted RBP25.08■■□□□ 1.6
UPF1-210ENST00000600689 PRKRIP1Q9H875 184 aaPredicted RBP25.06■■□□□ 1.6
UPF1-210ENST00000600689 L3MBTL2Q969R5 705 aa25.06■■□□□ 1.6
UPF1-210ENST00000600689 NOP58Q9Y2X3 529 aaKnown RBP25.04■■□□□ 1.6
UPF1-210ENST00000600689 NUP160Q12769 1436 aa25.03■■□□□ 1.6
UPF1-210ENST00000600689 GCC2Q8IWJ2 1684 aa25.02■■□□□ 1.6
UPF1-210ENST00000600689 DENND4BO75064 1496 aaPredicted RBP25.02■■□□□ 1.6
UPF1-210ENST00000600689 ZNF326Q5BKZ1 582 aaKnown RBP25.01■■□□□ 1.6
UPF1-210ENST00000600689 DAPK1P53355 1430 aa24.99■■□□□ 1.59
UPF1-210ENST00000600689 CARMIL2Q6F5E8 1435 aa24.97■■□□□ 1.59
UPF1-210ENST00000600689 ABCC5O15440 1437 aa24.97■■□□□ 1.59
UPF1-210ENST00000600689 CCDC136Q96JN2 1154 aa24.97■■□□□ 1.59
UPF1-210ENST00000600689 ZNF777Q9ULD5 760 aaPredicted RBP24.97■■□□□ 1.59
UPF1-210ENST00000600689 TROQ12816 1431 aaPredicted RBP24.95■■□□□ 1.59
UPF1-210ENST00000600689 NPM2Q86SE8 214 aaKnown RBP24.95■■□□□ 1.59
UPF1-210ENST00000600689 MPHOSPH9Q99550 1183 aa24.95■■□□□ 1.58
UPF1-210ENST00000600689 KIF14Q15058 1648 aa24.94■■□□□ 1.58
UPF1-210ENST00000600689 AKNAQ7Z591 1439 aa24.94■■□□□ 1.58
UPF1-210ENST00000600689 CFDP1Q9UEE9 299 aaPredicted RBP24.93■■□□□ 1.58
UPF1-210ENST00000600689 CNTLNQ9NXG0 1405 aa24.93■■□□□ 1.58
UPF1-210ENST00000600689 NBPF8Q3BBV2 869 aa24.92■■□□□ 1.58
UPF1-210ENST00000600689 ZBED9Q6R2W3 1325 aa24.91■■□□□ 1.58
UPF1-210ENST00000600689 DNMT1P26358 1616 aaKnown RBP24.91■■□□□ 1.58
UPF1-210ENST00000600689 KDM5BQ9UGL1 1544 aa24.9■■□□□ 1.58
UPF1-210ENST00000600689 ERICH6BQ5W0A0 696 aa24.9■■□□□ 1.58
UPF1-210ENST00000600689 SALL2Q9Y467 1007 aaPredicted RBP24.9■■□□□ 1.58
UPF1-210ENST00000600689 CCDC7Q96M83 1385 aa24.89■■□□□ 1.58
UPF1-210ENST00000600689 GPATCH8Q9UKJ3 1502 aaKnown RBP24.87■■□□□ 1.57
UPF1-210ENST00000600689 CAMSAP2Q08AD1 1489 aa24.87■■□□□ 1.57
UPF1-210ENST00000600689 ANP32AP39687 249 aaKnown RBP24.87■■□□□ 1.57
UPF1-210ENST00000600689 RTL5Q5HYW3 569 aaPredicted RBP24.85■■□□□ 1.57
UPF1-210ENST00000600689 KIF7Q2M1P5 1343 aa24.85■■□□□ 1.57
UPF1-210ENST00000600689 ROCK1Q13464 1354 aa24.85■■□□□ 1.57
UPF1-210ENST00000600689 RTN4Q9NQC3 1192 aaKnown RBP24.84■■□□□ 1.57
UPF1-210ENST00000600689 ZBTB47Q9UFB7 747 aaPredicted RBP24.82■■□□□ 1.56
UPF1-210ENST00000600689 PLEKHD1A6NEE1 506 aa24.82■■□□□ 1.56
UPF1-210ENST00000600689 ATP10BO94823 1461 aa24.82■■□□□ 1.56
UPF1-210ENST00000600689 ABCA8O94911 1581 aa24.81■■□□□ 1.56
UPF1-210ENST00000600689 SLC4A1APQ9BWU0 796 aaKnown RBP24.79■■□□□ 1.56
UPF1-210ENST00000600689 MYT1LQ9UL68 1186 aa24.78■■□□□ 1.56
UPF1-210ENST00000600689 ITSN2Q9NZM3 1697 aa24.78■■□□□ 1.56
UPF1-210ENST00000600689 ADCY10Q96PN6 1610 aa24.77■■□□□ 1.56
UPF1-210ENST00000600689 LAS1LQ9Y4W2 734 aaKnown RBP24.77■■□□□ 1.56
UPF1-210ENST00000600689 IPO9Q96P70 1041 aaKnown RBP24.75■■□□□ 1.55
UPF1-210ENST00000600689 NCOA1Q15788 1441 aa24.75■■□□□ 1.55
UPF1-210ENST00000600689 PTPRGP23470 1445 aa24.74■■□□□ 1.55
UPF1-210ENST00000600689 NUDCQ9Y266 331 aa24.74■■□□□ 1.55
UPF1-210ENST00000600689 CHD1O14646 1710 aa24.74■■□□□ 1.55
UPF1-210ENST00000600689 ANKRD30BQ9BXX2 1392 aa24.73■■□□□ 1.55
UPF1-210ENST00000600689 ANO8Q9HCE9 1232 aaPredicted RBP24.72■■□□□ 1.55
UPF1-210ENST00000600689 CDC42BPAQ5VT25 1732 aa24.71■■□□□ 1.55
UPF1-210ENST00000600689 TMC1Q8TDI8 760 aa24.7■■□□□ 1.54
UPF1-210ENST00000600689 ABCC10Q5T3U5 1492 aa24.69■■□□□ 1.54
UPF1-210ENST00000600689 IL27Q8NEV9 243 aa24.67■■□□□ 1.54
UPF1-210ENST00000600689 PZPP20742 1482 aa24.66■■□□□ 1.54
UPF1-210ENST00000600689 HNRNPMP52272 730 aaKnown RBP eCLIP24.66■■□□□ 1.54
UPF1-210ENST00000600689 CROCC2H7BZ55 1655 aa24.65■■□□□ 1.54
UPF1-210ENST00000600689 ADGBQ8N7X0 1667 aa24.65■■□□□ 1.54
UPF1-210ENST00000600689 RPRD2Q5VT52 1461 aaKnown RBP24.65■■□□□ 1.54
UPF1-210ENST00000600689 ANKRD30AQ9BXX3 1397 aa24.63■■□□□ 1.53
UPF1-210ENST00000600689 SKAP1Q86WV1 359 aa24.63■■□□□ 1.53
UPF1-210ENST00000600689 ERCC6L2Q5T890 1561 aa24.62■■□□□ 1.53
UPF1-210ENST00000600689 EXOC6Q8TAG9 804 aa24.62■■□□□ 1.53
UPF1-210ENST00000600689 ADGRL2O95490 1459 aa24.61■■□□□ 1.53
UPF1-210ENST00000600689 ANKRD50Q9ULJ7 1429 aa24.6■■□□□ 1.53
UPF1-210ENST00000600689 PKD2Q13563 968 aa24.6■■□□□ 1.53
UPF1-210ENST00000600689 TEX14Q8IWB6 1497 aa24.59■■□□□ 1.53
UPF1-210ENST00000600689 KDM2AQ9Y2K7 1162 aa24.59■■□□□ 1.53
UPF1-210ENST00000600689 SMG6Q86US8 1419 aaKnown RBP24.59■■□□□ 1.53
UPF1-210ENST00000600689 C9orf84Q5VXU9 1444 aa24.59■■□□□ 1.53
UPF1-210ENST00000600689 NEFMP07197 916 aa24.57■■□□□ 1.52
UPF1-210ENST00000600689 TSPY4P0CV99 314 aa24.56■■□□□ 1.52
UPF1-210ENST00000600689 TSPY10P0CW01 314 aa24.56■■□□□ 1.52
UPF1-210ENST00000600689 PRKCSHP14314 528 aaPredicted RBP24.54■■□□□ 1.52
Retrieved 100 of 20,778 RNA–protein pairs in 76.9 ms