RNA–Protein interactions for RNA: ENST00000600259.5

VRK3-220, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 572 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-220ENST00000600259 HECW1Q76N89 1606 aa10.24□□□□□ -0.77
VRK3-220ENST00000600259 ZFYVE16Q7Z3T8 1539 aa10.23□□□□□ -0.77
VRK3-220ENST00000600259 RIMS1Q86UR5 1692 aaKnown RBP10.23□□□□□ -0.77
VRK3-220ENST00000600259 PLPPR3Q6T4P5 718 aa10.22□□□□□ -0.77
VRK3-220ENST00000600259 AFAP1Q8N556 730 aa10.22□□□□□ -0.77
VRK3-220ENST00000600259 CERKQ8TCT0 537 aa10.22□□□□□ -0.77
VRK3-220ENST00000600259 ATP10AO60312 1499 aa10.22□□□□□ -0.77
VRK3-220ENST00000600259 CEBPAP49715 358 aaPredicted RBP10.21□□□□□ -0.77
VRK3-220ENST00000600259 ARHGAP35Q9NRY4 1499 aa10.21□□□□□ -0.78
VRK3-220ENST00000600259 CFAP74Q9C0B2 1584 aa10.21□□□□□ -0.78
VRK3-220ENST00000600259 UBTFP17480 764 aaKnown RBP10.2□□□□□ -0.78
VRK3-220ENST00000600259 ARHGEF12Q9NZN5 1544 aa10.2□□□□□ -0.78
VRK3-220ENST00000600259 FMN1Q68DA7 1419 aa10.19□□□□□ -0.78
VRK3-220ENST00000600259 ATP1B4Q9UN42 357 aaPredicted RBP10.19□□□□□ -0.78
VRK3-220ENST00000600259 CDK11AQ9UQ88 783 aaPredicted RBP10.19□□□□□ -0.78
VRK3-220ENST00000600259 TROQ12816 1431 aaPredicted RBP10.18□□□□□ -0.78
VRK3-220ENST00000600259 C9orf84Q5VXU9 1444 aa10.18□□□□□ -0.78
VRK3-220ENST00000600259 EHMT2Q96KQ7 1210 aa10.18□□□□□ -0.78
VRK3-220ENST00000600259 KIF14Q15058 1648 aa10.15□□□□□ -0.78
VRK3-220ENST00000600259 ZNF518AQ6AHZ1 1483 aa10.15□□□□□ -0.78
VRK3-220ENST00000600259 KDM5CP41229 1560 aa10.14□□□□□ -0.79
VRK3-220ENST00000600259 MLH3Q9UHC1 1453 aa10.14□□□□□ -0.79
VRK3-220ENST00000600259 TRAPPC8Q9Y2L5 1435 aa10.14□□□□□ -0.79
VRK3-220ENST00000600259 FER1L4A9Z1Z3 1794 aa10.12□□□□□ -0.79
VRK3-220ENST00000600259 DMRT2Q9Y5R5 561 aa10.12□□□□□ -0.79
VRK3-220ENST00000600259 REREQ9P2R6 1566 aa10.11□□□□□ -0.79
VRK3-220ENST00000600259 DIP2CQ9Y2E4 1556 aa10.11□□□□□ -0.79
VRK3-220ENST00000600259 AGLP35573 1532 aa10.11□□□□□ -0.79
VRK3-220ENST00000600259 ARHGAP5Q13017 1502 aa10.11□□□□□ -0.79
VRK3-220ENST00000600259 MYO5CQ9NQX4 1742 aa10.1□□□□□ -0.79
VRK3-220ENST00000600259 CLIP1P30622 1438 aa10.1□□□□□ -0.79
VRK3-220ENST00000600259 STRCQ7RTU9 1775 aa10.1□□□□□ -0.79
VRK3-220ENST00000600259 SETD1BQ9UPS6 1966 aaKnown RBP10.1□□□□□ -0.79
VRK3-220ENST00000600259 PTPRTO14522 1441 aa10.09□□□□□ -0.79
VRK3-220ENST00000600259 UHRF1BP1Q6BDS2 1440 aa10.09□□□□□ -0.79
VRK3-220ENST00000600259 CASKIN1Q8WXD9 1431 aa10.09□□□□□ -0.79
VRK3-220ENST00000600259 MYT1LQ9UL68 1186 aa10.09□□□□□ -0.79
VRK3-220ENST00000600259 LRRIQ1Q96JM4 1722 aa10.08□□□□□ -0.8
VRK3-220ENST00000600259 CDC42BPBQ9Y5S2 1711 aa10.08□□□□□ -0.8
VRK3-220ENST00000600259 ILDR2Q71H61 639 aa10.08□□□□□ -0.8
VRK3-220ENST00000600259 PREX1Q8TCU6 1659 aa10.08□□□□□ -0.8
VRK3-220ENST00000600259 ABCA6Q8N139 1617 aa10.07□□□□□ -0.8
VRK3-220ENST00000600259 ABCC1P33527 1531 aa10.07□□□□□ -0.8
VRK3-220ENST00000600259 HNRNPMP52272 730 aaKnown RBP eCLIP10.06□□□□□ -0.8
VRK3-220ENST00000600259 LTBP4Q8N2S1 1624 aa10.05□□□□□ -0.8
VRK3-220ENST00000600259 ZMYM3Q14202 1370 aa10.04□□□□□ -0.8
VRK3-220ENST00000600259 KIDINS220Q9ULH0 1771 aa10.04□□□□□ -0.8
VRK3-220ENST00000600259 GPATCH8Q9UKJ3 1502 aaKnown RBP10.04□□□□□ -0.8
VRK3-220ENST00000600259 C3P01024 1663 aa10.04□□□□□ -0.8
VRK3-220ENST00000600259 NCOA1Q15788 1441 aa10.04□□□□□ -0.8
VRK3-220ENST00000600259 CNTLNQ9NXG0 1405 aa10.04□□□□□ -0.8
VRK3-220ENST00000600259 CCDC18Q5T9S5 1454 aa10.04□□□□□ -0.8
VRK3-220ENST00000600259 PREX2Q70Z35 1606 aa10.04□□□□□ -0.8
VRK3-220ENST00000600259 ESF1Q9H501 851 aaKnown RBP10.03□□□□□ -0.8
VRK3-220ENST00000600259 ZNF777Q9ULD5 760 aaPredicted RBP10.03□□□□□ -0.8
VRK3-220ENST00000600259 SPAG9O60271 1321 aaKnown RBP10.03□□□□□ -0.8
VRK3-220ENST00000600259 SAMD9LQ8IVG5 1584 aa10.02□□□□□ -0.81
VRK3-220ENST00000600259 NPATQ14207 1427 aa10.02□□□□□ -0.81
VRK3-220ENST00000600259 KIAA1107Q9UPP5 1409 aa10.02□□□□□ -0.81
VRK3-220ENST00000600259 DISP3Q9P2K9 1392 aa10.01□□□□□ -0.81
VRK3-220ENST00000600259 ITSN2Q9NZM3 1697 aa10.01□□□□□ -0.81
VRK3-220ENST00000600259 NCKAP5LQ9HCH0 1330 aa10.01□□□□□ -0.81
VRK3-220ENST00000600259 FYCO1Q9BQS8 1478 aa10□□□□□ -0.81
VRK3-220ENST00000600259 CDC42BPAQ5VT25 1732 aa10□□□□□ -0.81
VRK3-220ENST00000600259 SOCS7O14512 581 aa10□□□□□ -0.81
VRK3-220ENST00000600259 CFDP1Q9UEE9 299 aaPredicted RBP10□□□□□ -0.81
VRK3-220ENST00000600259 PPP6R1Q9UPN7 881 aa9.99□□□□□ -0.81
VRK3-220ENST00000600259 ZNF644Q9H582 1327 aaPredicted RBP9.99□□□□□ -0.81
VRK3-220ENST00000600259 PTPRKQ15262 1439 aa9.99□□□□□ -0.81
VRK3-220ENST00000600259 IQSEC2Q5JU85 1478 aa9.98□□□□□ -0.81
VRK3-220ENST00000600259 SYCP2Q9BX26 1530 aa9.98□□□□□ -0.81
VRK3-220ENST00000600259 ZNF335Q9H4Z2 1342 aaPredicted RBP9.98□□□□□ -0.81
VRK3-220ENST00000600259 A2MP01023 1474 aa9.98□□□□□ -0.81
VRK3-220ENST00000600259 CAMSAP1Q5T5Y3 1602 aa9.97□□□□□ -0.81
VRK3-220ENST00000600259 PKD2Q13563 968 aa9.97□□□□□ -0.81
VRK3-220ENST00000600259 GGT6Q6P531 493 aa9.97□□□□□ -0.81
VRK3-220ENST00000600259 MBD5Q9P267 1494 aa9.97□□□□□ -0.81
VRK3-220ENST00000600259 CCNB3Q8WWL7 1395 aa9.96□□□□□ -0.82
VRK3-220ENST00000600259 TCOF1Q13428 1488 aaKnown RBP9.96□□□□□ -0.82
VRK3-220ENST00000600259 PLEKHH2Q8IVE3 1493 aa9.96□□□□□ -0.82
VRK3-220ENST00000600259 ATP7AQ04656 1500 aa9.96□□□□□ -0.82
VRK3-220ENST00000600259 PLXNC1O60486 1568 aa9.96□□□□□ -0.82
VRK3-220ENST00000600259 MROH2AA6NES4 1674 aa9.96□□□□□ -0.82
VRK3-220ENST00000600259 PLA2R1Q13018 1463 aa9.95□□□□□ -0.82
VRK3-220ENST00000600259 DHX29Q7Z478 1369 aaKnown RBP9.94□□□□□ -0.82
VRK3-220ENST00000600259 INO80Q9ULG1 1556 aaPredicted RBP9.93□□□□□ -0.82
VRK3-220ENST00000600259 MTUS2Q5JR59 1369 aa9.93□□□□□ -0.82
VRK3-220ENST00000600259 FBXO31Q5XUX0 539 aaPredicted RBP9.93□□□□□ -0.82
VRK3-220ENST00000600259 RTEL1-TNFRSF6BF6WH68 1400 aa9.92□□□□□ -0.82
VRK3-220ENST00000600259 UBAP1LF5GYI3 381 aa9.92□□□□□ -0.82
VRK3-220ENST00000600259 SUPT6HQ7KZ85 1726 aaKnown RBP9.92□□□□□ -0.82
VRK3-220ENST00000600259 CEP162Q5TB80 1403 aa9.9□□□□□ -0.82
VRK3-220ENST00000600259 CLTCQ00610 1675 aaKnown RBP9.9□□□□□ -0.82
VRK3-220ENST00000600259 CEP170BQ9Y4F5 1589 aaPredicted RBP9.9□□□□□ -0.82
VRK3-220ENST00000600259 KIF3BO15066 747 aa9.9□□□□□ -0.82
VRK3-220ENST00000600259 A2ML1A8K2U0 1454 aa9.9□□□□□ -0.83
VRK3-220ENST00000600259 TIAM1Q13009 1591 aa9.89□□□□□ -0.83
VRK3-220ENST00000600259 ZNF142P52746 1687 aaPredicted RBP9.89□□□□□ -0.83
VRK3-220ENST00000600259 MYO3AQ8NEV4 1616 aa9.89□□□□□ -0.83
VRK3-220ENST00000600259 SPATA31D1Q6ZQQ2 1576 aa9.88□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms