RNA–Protein interactions for RNA: ENST00000589117.5

ZNF540-206, Transcript of zinc finger protein 540, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene ZNF540, Length 2,349 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540-206ENST00000589117 CIZ1Q9ULV3 898 aaPredicted RBP10.66□□□□□ -0.7
ZNF540-206ENST00000589117 ZNF692Q9BU19 519 aaPredicted RBP10.65□□□□□ -0.7
ZNF540-206ENST00000589117 OSCARQ8IYS5 282 aa10.63□□□□□ -0.71
ZNF540-206ENST00000589117 GTF3C3Q9Y5Q9 886 aa10.63□□□□□ -0.71
ZNF540-206ENST00000589117 THOC2Q8NI27 1593 aaKnown RBP10.62□□□□□ -0.71
ZNF540-206ENST00000589117 RNF39Q9H2S5 420 aa10.62□□□□□ -0.71
ZNF540-206ENST00000589117 SAMD9Q5K651 1589 aa10.62□□□□□ -0.71
ZNF540-206ENST00000589117 NBR1Q14596 966 aa10.62□□□□□ -0.71
ZNF540-206ENST00000589117 RNF25Q96BH1 459 aaPredicted RBP10.62□□□□□ -0.71
ZNF540-206ENST00000589117 KIF21AQ7Z4S6 1674 aa10.62□□□□□ -0.71
ZNF540-206ENST00000589117 SNAPC4Q5SXM2 1469 aa10.61□□□□□ -0.71
ZNF540-206ENST00000589117 YTHDC1Q96MU7 727 aaKnown RBP10.61□□□□□ -0.71
ZNF540-206ENST00000589117 FGD6Q6ZV73 1430 aa10.61□□□□□ -0.71
ZNF540-206ENST00000589117 TARBP1Q13395 1621 aaKnown RBP10.6□□□□□ -0.71
ZNF540-206ENST00000589117 MRC2Q9UBG0 1479 aa10.6□□□□□ -0.71
ZNF540-206ENST00000589117 STAG3Q9UJ98 1225 aa10.59□□□□□ -0.71
ZNF540-206ENST00000589117 CCDC18Q5T9S5 1454 aa10.59□□□□□ -0.71
ZNF540-206ENST00000589117 GRIN2BQ13224 1484 aa10.58□□□□□ -0.72
ZNF540-206ENST00000589117 NKX1-1Q15270 411 aaPredicted RBP10.58□□□□□ -0.72
ZNF540-206ENST00000589117 MYOM3Q5VTT5 1437 aa10.57□□□□□ -0.72
ZNF540-206ENST00000589117 MAPKBP1O60336 1514 aa10.57□□□□□ -0.72
ZNF540-206ENST00000589117 SSUH2Q9Y2M2 353 aa10.57□□□□□ -0.72
ZNF540-206ENST00000589117 ZBTB12Q9Y330 459 aaPredicted RBP10.57□□□□□ -0.72
ZNF540-206ENST00000589117 EHBP1L1Q8N3D4 1523 aa10.56□□□□□ -0.72
ZNF540-206ENST00000589117 IFT140Q96RY7 1462 aa10.56□□□□□ -0.72
ZNF540-206ENST00000589117 SUPT6HQ7KZ85 1726 aaKnown RBP10.55□□□□□ -0.72
ZNF540-206ENST00000589117 NCOA2Q15596 1464 aa10.55□□□□□ -0.72
ZNF540-206ENST00000589117 IQGAP2Q13576 1575 aa10.55□□□□□ -0.72
ZNF540-206ENST00000589117 POTEDQ86YR6 584 aa10.55□□□□□ -0.72
ZNF540-206ENST00000589117 HFM1A2PYH4 1435 aa10.54□□□□□ -0.72
ZNF540-206ENST00000589117 PBRM1Q86U86 1689 aa10.54□□□□□ -0.72
ZNF540-206ENST00000589117 HS6ST3Q8IZP7 471 aa10.54□□□□□ -0.72
ZNF540-206ENST00000589117 HECW1Q76N89 1606 aa10.53□□□□□ -0.72
ZNF540-206ENST00000589117 ADAMTS12P58397 1594 aa10.52□□□□□ -0.73
ZNF540-206ENST00000589117 UACAQ9BZF9 1416 aa10.52□□□□□ -0.73
ZNF540-206ENST00000589117 SIN3AQ96ST3 1273 aa10.52□□□□□ -0.73
ZNF540-206ENST00000589117 CDK11AQ9UQ88 783 aaPredicted RBP10.52□□□□□ -0.73
ZNF540-206ENST00000589117 PPP1R15AO75807 674 aaPredicted RBP10.51□□□□□ -0.73
ZNF540-206ENST00000589117 TONSLQ96HA7 1378 aa10.51□□□□□ -0.73
ZNF540-206ENST00000589117 MIA2Q96PC5 1412 aa10.5□□□□□ -0.73
ZNF540-206ENST00000589117 UGGT2Q9NYU1 1516 aa10.49□□□□□ -0.73
ZNF540-206ENST00000589117 KIAA0586Q9BVV6 1533 aa10.49□□□□□ -0.73
ZNF540-206ENST00000589117 WDR62O43379 1518 aa10.49□□□□□ -0.73
ZNF540-206ENST00000589117 EPRSP07814 1512 aaKnown RBP10.49□□□□□ -0.73
ZNF540-206ENST00000589117 PTPN23Q9H3S7 1636 aa10.48□□□□□ -0.73
ZNF540-206ENST00000589117 ARHGEF11O15085 1522 aa10.48□□□□□ -0.73
ZNF540-206ENST00000589117 NAIPQ13075 1403 aa10.48□□□□□ -0.73
ZNF540-206ENST00000589117 SPDYE2BA6NHP3 402 aa10.47□□□□□ -0.73
ZNF540-206ENST00000589117 SPDYE6P0CI01 402 aa10.47□□□□□ -0.73
ZNF540-206ENST00000589117 SPDYE2Q495Y8 402 aa10.47□□□□□ -0.73
ZNF540-206ENST00000589117 TCOF1Q13428 1488 aaKnown RBP10.47□□□□□ -0.73
ZNF540-206ENST00000589117 ERCC6Q03468 1493 aa10.46□□□□□ -0.73
ZNF540-206ENST00000589117 LRRIQ1Q96JM4 1722 aa10.46□□□□□ -0.73
ZNF540-206ENST00000589117 GTPBP6O43824 516 aaPredicted RBP10.46□□□□□ -0.74
ZNF540-206ENST00000589117 AKNAQ7Z591 1439 aa10.46□□□□□ -0.74
ZNF540-206ENST00000589117 PTPRKQ15262 1439 aa10.45□□□□□ -0.74
ZNF540-206ENST00000589117 CHMP7Q8WUX9 453 aaPredicted RBP10.45□□□□□ -0.74
ZNF540-206ENST00000589117 ZNF608Q9ULD9 1512 aaPredicted RBP10.44□□□□□ -0.74
ZNF540-206ENST00000589117 MAGI1Q96QZ7 1491 aaPredicted RBP10.43□□□□□ -0.74
ZNF540-206ENST00000589117 TRIM52Q96A61 297 aa10.43□□□□□ -0.74
ZNF540-206ENST00000589117 GRIN2AQ12879 1464 aa10.43□□□□□ -0.74
ZNF540-206ENST00000589117 DSG3P32926 999 aa10.42□□□□□ -0.74
ZNF540-206ENST00000589117 DDX10Q13206 875 aaKnown RBP10.42□□□□□ -0.74
ZNF540-206ENST00000589117 RRP7BPQ9NSQ0 103 aa10.42□□□□□ -0.74
ZNF540-206ENST00000589117 MAGI3Q5TCQ9 1506 aa10.42□□□□□ -0.74
ZNF540-206ENST00000589117 CHIC2Q9UKJ5 165 aa10.42□□□□□ -0.74
ZNF540-206ENST00000589117 ANP32CO43423 234 aa10.41□□□□□ -0.74
ZNF540-206ENST00000589117 CARMIL2Q6F5E8 1435 aa10.41□□□□□ -0.74
ZNF540-206ENST00000589117 KIAA0556O60303 1618 aa10.4□□□□□ -0.74
ZNF540-206ENST00000589117 CDK13Q14004 1512 aaKnown RBP10.4□□□□□ -0.74
ZNF540-206ENST00000589117 C1QBPQ07021 282 aaKnown RBP10.4□□□□□ -0.74
ZNF540-206ENST00000589117 ROCK1Q13464 1354 aa10.4□□□□□ -0.74
ZNF540-206ENST00000589117 DISP1Q96F81 1524 aa10.39□□□□□ -0.75
ZNF540-206ENST00000589117 SYNJ2O15056 1496 aa10.39□□□□□ -0.75
ZNF540-206ENST00000589117 EIF4G3O43432 1585 aaKnown RBP10.39□□□□□ -0.75
ZNF540-206ENST00000589117 ARID3CA6NKF2 412 aa10.38□□□□□ -0.75
ZNF540-206ENST00000589117 CCER2I3L3R5 266 aa10.38□□□□□ -0.75
ZNF540-206ENST00000589117 GCC2Q8IWJ2 1684 aa10.38□□□□□ -0.75
ZNF540-206ENST00000589117 MPHOSPH9Q99550 1183 aa10.38□□□□□ -0.75
ZNF540-206ENST00000589117 RAPGEF6Q8TEU7 1601 aa10.37□□□□□ -0.75
ZNF540-206ENST00000589117 NUP153P49790 1475 aaKnown RBP10.36□□□□□ -0.75
ZNF540-206ENST00000589117 JPH4Q96JJ6 628 aa10.36□□□□□ -0.75
ZNF540-206ENST00000589117 CFDP1Q9UEE9 299 aaPredicted RBP10.35□□□□□ -0.75
ZNF540-206ENST00000589117 DAPK1P53355 1430 aa10.35□□□□□ -0.75
ZNF540-206ENST00000589117 TROQ12816 1431 aaPredicted RBP10.35□□□□□ -0.75
ZNF540-206ENST00000589117 NUBP1P53384 320 aa10.34□□□□□ -0.75
ZNF540-206ENST00000589117 ZBTB47Q9UFB7 747 aaPredicted RBP10.34□□□□□ -0.75
ZNF540-206ENST00000589117 STK25O00506 426 aa10.34□□□□□ -0.75
ZNF540-206ENST00000589117 TMEM132AQ24JP5 1023 aa10.34□□□□□ -0.75
ZNF540-206ENST00000589117 PLEKHD1A6NEE1 506 aa10.33□□□□□ -0.76
ZNF540-206ENST00000589117 RIOK3O14730 519 aaKnown RBP10.33□□□□□ -0.76
ZNF540-206ENST00000589117 EIF4G2P78344 907 aaKnown RBP eCLIP10.33□□□□□ -0.76
ZNF540-206ENST00000589117 HIRIP3Q9BW71 556 aaPredicted RBP10.32□□□□□ -0.76
ZNF540-206ENST00000589117 ABCC5O15440 1437 aa10.32□□□□□ -0.76
ZNF540-206ENST00000589117 DNMT1P26358 1616 aaKnown RBP10.32□□□□□ -0.76
ZNF540-206ENST00000589117 NUP160Q12769 1436 aa10.31□□□□□ -0.76
ZNF540-206ENST00000589117 PLEKHG5O94827 1062 aa10.31□□□□□ -0.76
ZNF540-206ENST00000589117 ITSN2Q9NZM3 1697 aa10.3□□□□□ -0.76
ZNF540-206ENST00000589117 CEP170Q5SW79 1584 aa10.3□□□□□ -0.76
ZNF540-206ENST00000589117 PRG4Q92954 1404 aaPredicted RBP10.29□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 106.2 ms