RNA–Protein interactions for RNA: ENST00000588344.2

CIRBP-218, Transcript of cold inducible RNA binding protein, human

TSL 3

Gene CIRBP, Length 370 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CIRBP-218	ENST00000588344	ZNF777	Q9ULD5	760 aa	Predicted RBP	13.97	□□□□□ -0.17
CIRBP-218	ENST00000588344	SUPT6H	Q7KZ85	1726 aa	Known RBP	13.97	□□□□□ -0.17
CIRBP-218	ENST00000588344	MIA2	Q96PC5	1412 aa		13.97	□□□□□ -0.17
CIRBP-218	ENST00000588344	CFAP74	Q9C0B2	1584 aa		13.96	□□□□□ -0.18
CIRBP-218	ENST00000588344	PLEKHH2	Q8IVE3	1493 aa		13.95	□□□□□ -0.18
CIRBP-218	ENST00000588344	KIAA1107	Q9UPP5	1409 aa		13.95	□□□□□ -0.18
CIRBP-218	ENST00000588344	MYOM3	Q5VTT5	1437 aa		13.94	□□□□□ -0.18
CIRBP-218	ENST00000588344	SCAPER	Q9BY12	1400 aa		13.94	□□□□□ -0.18
CIRBP-218	ENST00000588344	DENND4B	O75064	1496 aa	Predicted RBP	13.93	□□□□□ -0.18
CIRBP-218	ENST00000588344	PPRC1	Q5VV67	1664 aa	Known RBP	13.93	□□□□□ -0.18
CIRBP-218	ENST00000588344	ADGRL1	O94910	1474 aa		13.93	□□□□□ -0.18
CIRBP-218	ENST00000588344	MYO5C	Q9NQX4	1742 aa		13.93	□□□□□ -0.18
CIRBP-218	ENST00000588344	RAPGEF3	O95398	923 aa		13.92	□□□□□ -0.18
CIRBP-218	ENST00000588344	TSPOAP1	O95153	1857 aa		13.92	□□□□□ -0.18
CIRBP-218	ENST00000588344	PREX2	Q70Z35	1606 aa		13.9	□□□□□ -0.18
CIRBP-218	ENST00000588344	HNRNPM	P52272	730 aa	Known RBP eCLIP	13.9	□□□□□ -0.18
CIRBP-218	ENST00000588344	PPARGC1B	Q86YN6	1023 aa	Known RBP	13.9	□□□□□ -0.18
CIRBP-218	ENST00000588344	COL17A1	Q9UMD9	1497 aa	Predicted RBP	13.9	□□□□□ -0.18
CIRBP-218	ENST00000588344	ZNF644	Q9H582	1327 aa	Predicted RBP	13.9	□□□□□ -0.19
CIRBP-218	ENST00000588344	TSPY4	P0CV99	314 aa		13.89	□□□□□ -0.19
CIRBP-218	ENST00000588344	TSPY10	P0CW01	314 aa		13.89	□□□□□ -0.19
CIRBP-218	ENST00000588344	AFAP1	Q8N556	730 aa		13.89	□□□□□ -0.19
CIRBP-218	ENST00000588344	KDM6B	O15054	1643 aa		13.89	□□□□□ -0.19
CIRBP-218	ENST00000588344	ZNF518A	Q6AHZ1	1483 aa		13.88	□□□□□ -0.19
CIRBP-218	ENST00000588344	FGD6	Q6ZV73	1430 aa		13.88	□□□□□ -0.19
CIRBP-218	ENST00000588344	ITSN2	Q9NZM3	1697 aa		13.88	□□□□□ -0.19
CIRBP-218	ENST00000588344	POGZ	Q7Z3K3	1410 aa		13.87	□□□□□ -0.19
CIRBP-218	ENST00000588344	CDC42BPA	Q5VT25	1732 aa		13.87	□□□□□ -0.19
CIRBP-218	ENST00000588344	CDC42BPB	Q9Y5S2	1711 aa		13.87	□□□□□ -0.19
CIRBP-218	ENST00000588344	MAGI2	Q86UL8	1455 aa		13.87	□□□□□ -0.19
CIRBP-218	ENST00000588344	MYT1L	Q9UL68	1186 aa		13.86	□□□□□ -0.19
CIRBP-218	ENST00000588344	SPAG9	O60271	1321 aa	Known RBP	13.86	□□□□□ -0.19
CIRBP-218	ENST00000588344	ABCC1	P33527	1531 aa		13.85	□□□□□ -0.19
CIRBP-218	ENST00000588344	DROSHA	Q9NRR4	1374 aa	Known RBP eCLIP	13.84	□□□□□ -0.19
CIRBP-218	ENST00000588344	FAM50A	Q14320	339 aa	Known RBP	13.84	□□□□□ -0.19
CIRBP-218	ENST00000588344	CAMSAP2	Q08AD1	1489 aa		13.84	□□□□□ -0.19
CIRBP-218	ENST00000588344	MBD5	Q9P267	1494 aa		13.84	□□□□□ -0.19
CIRBP-218	ENST00000588344	TRAPPC8	Q9Y2L5	1435 aa		13.83	□□□□□ -0.2
CIRBP-218	ENST00000588344	ARHGEF12	Q9NZN5	1544 aa		13.83	□□□□□ -0.2
CIRBP-218	ENST00000588344	SAMD9L	Q8IVG5	1584 aa		13.83	□□□□□ -0.2
CIRBP-218	ENST00000588344	TCOF1	Q13428	1488 aa	Known RBP	13.82	□□□□□ -0.2
CIRBP-218	ENST00000588344	MLH3	Q9UHC1	1453 aa		13.82	□□□□□ -0.2
CIRBP-218	ENST00000588344	RTEL1-TNFRSF6B	F6WH68	1400 aa		13.81	□□□□□ -0.2
CIRBP-218	ENST00000588344	CCDC141	Q6ZP82	1450 aa		13.8	□□□□□ -0.2
CIRBP-218	ENST00000588344	SYCP2	Q9BX26	1530 aa		13.8	□□□□□ -0.2
CIRBP-218	ENST00000588344	RRBP1	Q9P2E9	1410 aa	Known RBP	13.79	□□□□□ -0.2
CIRBP-218	ENST00000588344	ZMYM4	Q5VZL5	1548 aa		13.79	□□□□□ -0.2
CIRBP-218	ENST00000588344	KDM5C	P41229	1560 aa		13.78	□□□□□ -0.2
CIRBP-218	ENST00000588344	ARHGEF5	Q12774	1597 aa		13.78	□□□□□ -0.2
CIRBP-218	ENST00000588344	PTPN23	Q9H3S7	1636 aa		13.78	□□□□□ -0.2
CIRBP-218	ENST00000588344	ABCC5	O15440	1437 aa		13.76	□□□□□ -0.21
CIRBP-218	ENST00000588344	RICTOR	Q6R327	1708 aa		13.76	□□□□□ -0.21
CIRBP-218	ENST00000588344	FRMPD1	Q5SYB0	1578 aa		13.75	□□□□□ -0.21
CIRBP-218	ENST00000588344	ATP10A	O60312	1499 aa		13.75	□□□□□ -0.21
CIRBP-218	ENST00000588344	DAPK1	P53355	1430 aa		13.75	□□□□□ -0.21
CIRBP-218	ENST00000588344	ZFYVE16	Q7Z3T8	1539 aa		13.74	□□□□□ -0.21
CIRBP-218	ENST00000588344	SHANK2	Q9UPX8	1470 aa		13.74	□□□□□ -0.21
CIRBP-218	ENST00000588344	C9orf84	Q5VXU9	1444 aa		13.73	□□□□□ -0.21
CIRBP-218	ENST00000588344	YEATS2	Q9ULM3	1422 aa		13.73	□□□□□ -0.21
CIRBP-218	ENST00000588344	ANKRD30A	Q9BXX3	1397 aa		13.73	□□□□□ -0.21
CIRBP-218	ENST00000588344	ARID4B	Q4LE39	1312 aa	Predicted RBP	13.72	□□□□□ -0.21
CIRBP-218	ENST00000588344	HECW2	Q9P2P5	1572 aa		13.72	□□□□□ -0.21
CIRBP-218	ENST00000588344	DHX29	Q7Z478	1369 aa	Known RBP	13.71	□□□□□ -0.21
CIRBP-218	ENST00000588344	ATP7A	Q04656	1500 aa		13.71	□□□□□ -0.21
CIRBP-218	ENST00000588344	CHIC2	Q9UKJ5	165 aa		13.71	□□□□□ -0.21
CIRBP-218	ENST00000588344	ROCK1	Q13464	1354 aa		13.71	□□□□□ -0.22
CIRBP-218	ENST00000588344	ITGAE	P38570	1179 aa		13.7	□□□□□ -0.22
CIRBP-218	ENST00000588344	RRP7BP	Q9NSQ0	103 aa		13.7	□□□□□ -0.22
CIRBP-218	ENST00000588344	PPP6R1	Q9UPN7	881 aa		13.69	□□□□□ -0.22
CIRBP-218	ENST00000588344	NCOA1	Q15788	1441 aa		13.69	□□□□□ -0.22
CIRBP-218	ENST00000588344	MAST1	Q9Y2H9	1570 aa		13.69	□□□□□ -0.22
CIRBP-218	ENST00000588344	ARHGEF40	Q8TER5	1519 aa		13.69	□□□□□ -0.22
CIRBP-218	ENST00000588344	A2M	P01023	1474 aa		13.68	□□□□□ -0.22
CIRBP-218	ENST00000588344	DNMT1	P26358	1616 aa	Known RBP	13.68	□□□□□ -0.22
CIRBP-218	ENST00000588344	RERE	Q9P2R6	1566 aa		13.67	□□□□□ -0.22
CIRBP-218	ENST00000588344	KIF15	Q9NS87	1388 aa		13.67	□□□□□ -0.22
CIRBP-218	ENST00000588344	INO80	Q9ULG1	1556 aa	Predicted RBP	13.66	□□□□□ -0.22
CIRBP-218	ENST00000588344	ADGRL2	O95490	1459 aa		13.66	□□□□□ -0.22
CIRBP-218	ENST00000588344	KIDINS220	Q9ULH0	1771 aa		13.66	□□□□□ -0.22
CIRBP-218	ENST00000588344	AGL	P35573	1532 aa		13.65	□□□□□ -0.22
CIRBP-218	ENST00000588344	DIP2C	Q9Y2E4	1556 aa		13.65	□□□□□ -0.22
CIRBP-218	ENST00000588344	ACIN1	Q9UKV3	1341 aa	Known RBP	13.64	□□□□□ -0.23
CIRBP-218	ENST00000588344	PTPRK	Q15262	1439 aa		13.64	□□□□□ -0.23
CIRBP-218	ENST00000588344	KIF3B	O15066	747 aa		13.64	□□□□□ -0.23
CIRBP-218	ENST00000588344	ESF1	Q9H501	851 aa	Known RBP	13.64	□□□□□ -0.23
CIRBP-218	ENST00000588344	DUOX2	Q9NRD8	1548 aa		13.63	□□□□□ -0.23
CIRBP-218	ENST00000588344	ERBIN	Q96RT1	1412 aa		13.63	□□□□□ -0.23
CIRBP-218	ENST00000588344	GGT6	Q6P531	493 aa		13.62	□□□□□ -0.23
CIRBP-218	ENST00000588344	PLXNC1	O60486	1568 aa		13.62	□□□□□ -0.23
CIRBP-218	ENST00000588344	ABCA6	Q8N139	1617 aa		13.61	□□□□□ -0.23
CIRBP-218	ENST00000588344	MLEC	Q14165	292 aa		13.61	□□□□□ -0.23
CIRBP-218	ENST00000588344	TRIM26	Q12899	539 aa	Predicted RBP	13.6	□□□□□ -0.23
CIRBP-218	ENST00000588344	ANKRD50	Q9ULJ7	1429 aa		13.6	□□□□□ -0.23
CIRBP-218	ENST00000588344	ADGB	Q8N7X0	1667 aa		13.59	□□□□□ -0.23
CIRBP-218	ENST00000588344	CROCC2	H7BZ55	1655 aa		13.59	□□□□□ -0.23
CIRBP-218	ENST00000588344	KDM4F	A0A1W2PPD8	638 aa		13.58	□□□□□ -0.24
CIRBP-218	ENST00000588344	WASHC2C	Q9Y4E1	1318 aa		13.58	□□□□□ -0.24
CIRBP-218	ENST00000588344	HFM1	A2PYH4	1435 aa		13.57	□□□□□ -0.24
CIRBP-218	ENST00000588344	KANK1	Q14678	1352 aa		13.57	□□□□□ -0.24
CIRBP-218	ENST00000588344	CNTLN	Q9NXG0	1405 aa		13.56	□□□□□ -0.24

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