RNA–Protein interactions for RNA: ENST00000578663.1

CDK5RAP3-209, Transcript of CDK5 regulatory subunit associated protein 3, humanhuman

TSL 3

Gene CDK5RAP3, Length 949 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDK5RAP3-209ENST00000578663 C3P01024 1663 aa12.65□□□□□ -0.38
CDK5RAP3-209ENST00000578663 ZFYVE16Q7Z3T8 1539 aa12.64□□□□□ -0.39
CDK5RAP3-209ENST00000578663 ALKQ9UM73 1620 aa12.64□□□□□ -0.39
CDK5RAP3-209ENST00000578663 EFCAB5A4FU69 1503 aa12.62□□□□□ -0.39
CDK5RAP3-209ENST00000578663 CTTNBP2Q8WZ74 1663 aa12.62□□□□□ -0.39
CDK5RAP3-209ENST00000578663 PIP4K2BP78356 416 aa12.62□□□□□ -0.39
CDK5RAP3-209ENST00000578663 FHOD3Q2V2M9 1422 aa12.62□□□□□ -0.39
CDK5RAP3-209ENST00000578663 SCAF1Q9H7N4 1312 aaKnown RBP12.62□□□□□ -0.39
CDK5RAP3-209ENST00000578663 DENND4BO75064 1496 aaPredicted RBP12.6□□□□□ -0.39
CDK5RAP3-209ENST00000578663 CAMSAP1Q5T5Y3 1602 aa12.6□□□□□ -0.39
CDK5RAP3-209ENST00000578663 POTEAQ6S8J7 498 aa12.57□□□□□ -0.4
CDK5RAP3-209ENST00000578663 HECW1Q76N89 1606 aa12.57□□□□□ -0.4
CDK5RAP3-209ENST00000578663 MAGI2Q86UL8 1455 aa12.53□□□□□ -0.4
CDK5RAP3-209ENST00000578663 SUPT6HQ7KZ85 1726 aaKnown RBP12.53□□□□□ -0.4
CDK5RAP3-209ENST00000578663 ATP10BO94823 1461 aa12.53□□□□□ -0.4
CDK5RAP3-209ENST00000578663 TOM1O60784 492 aa12.52□□□□□ -0.41
CDK5RAP3-209ENST00000578663 NCKAP5LQ9HCH0 1330 aa12.52□□□□□ -0.41
CDK5RAP3-209ENST00000578663 CFAP74Q9C0B2 1584 aa12.51□□□□□ -0.41
CDK5RAP3-209ENST00000578663 TRAPPC8Q9Y2L5 1435 aa12.49□□□□□ -0.41
CDK5RAP3-209ENST00000578663 ATP10AO60312 1499 aa12.48□□□□□ -0.41
CDK5RAP3-209ENST00000578663 C9orf84Q5VXU9 1444 aa12.48□□□□□ -0.41
CDK5RAP3-209ENST00000578663 FAM9AQ8IZU1 332 aaPredicted RBP12.48□□□□□ -0.41
CDK5RAP3-209ENST00000578663 UPF1Q92900 1129 aaKnown RBP eCLIP12.48□□□□□ -0.41
CDK5RAP3-209ENST00000578663 PRXQ9BXM0 1461 aa12.47□□□□□ -0.41
CDK5RAP3-209ENST00000578663 ZNF142P52746 1687 aaPredicted RBP12.47□□□□□ -0.41
CDK5RAP3-209ENST00000578663 TCOF1Q13428 1488 aaKnown RBP12.46□□□□□ -0.41
CDK5RAP3-209ENST00000578663 CPS1P31327 1500 aa12.46□□□□□ -0.42
CDK5RAP3-209ENST00000578663 ARID3CA6NKF2 412 aa12.45□□□□□ -0.42
CDK5RAP3-209ENST00000578663 SENP3Q9H4L4 574 aaPredicted RBP12.45□□□□□ -0.42
CDK5RAP3-209ENST00000578663 RAPGEF6Q8TEU7 1601 aa12.44□□□□□ -0.42
CDK5RAP3-209ENST00000578663 PLA2R1Q13018 1463 aa12.44□□□□□ -0.42
CDK5RAP3-209ENST00000578663 SAMD9Q5K651 1589 aa12.43□□□□□ -0.42
CDK5RAP3-209ENST00000578663 PTPRKQ15262 1439 aa12.42□□□□□ -0.42
CDK5RAP3-209ENST00000578663 MYO3AQ8NEV4 1616 aa12.4□□□□□ -0.42
CDK5RAP3-209ENST00000578663 NUP153P49790 1475 aaKnown RBP12.4□□□□□ -0.43
CDK5RAP3-209ENST00000578663 POLR1AO95602 1720 aaPredicted RBP12.4□□□□□ -0.43
CDK5RAP3-209ENST00000578663 PKD2Q13563 968 aa12.39□□□□□ -0.43
CDK5RAP3-209ENST00000578663 SHANK2Q9UPX8 1470 aa12.39□□□□□ -0.43
CDK5RAP3-209ENST00000578663 PPP6R1Q9UPN7 881 aa12.38□□□□□ -0.43
CDK5RAP3-209ENST00000578663 MROH2AA6NES4 1674 aa12.38□□□□□ -0.43
CDK5RAP3-209ENST00000578663 STRCP1A6NGW2 1772 aa12.37□□□□□ -0.43
CDK5RAP3-209ENST00000578663 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP12.37□□□□□ -0.43
CDK5RAP3-209ENST00000578663 VWDEQ8N2E2 1590 aa12.36□□□□□ -0.43
CDK5RAP3-209ENST00000578663 NEURL4Q96JN8 1562 aa12.36□□□□□ -0.43
CDK5RAP3-209ENST00000578663 REREQ9P2R6 1566 aa12.36□□□□□ -0.43
CDK5RAP3-209ENST00000578663 DIP2CQ9Y2E4 1556 aa12.35□□□□□ -0.43
CDK5RAP3-209ENST00000578663 CEP170BQ9Y4F5 1589 aaPredicted RBP12.35□□□□□ -0.43
CDK5RAP3-209ENST00000578663 NPATQ14207 1427 aa12.35□□□□□ -0.43
CDK5RAP3-209ENST00000578663 RNF17Q9BXT8 1623 aaKnown RBP12.34□□□□□ -0.43
CDK5RAP3-209ENST00000578663 AGLP35573 1532 aa12.34□□□□□ -0.43
CDK5RAP3-209ENST00000578663 SCAPERQ9BY12 1400 aa12.33□□□□□ -0.44
CDK5RAP3-209ENST00000578663 P3H3Q8IVL6 736 aa12.32□□□□□ -0.44
CDK5RAP3-209ENST00000578663 ABCA6Q8N139 1617 aa12.32□□□□□ -0.44
CDK5RAP3-209ENST00000578663 PLEKHD1A6NEE1 506 aa12.31□□□□□ -0.44
CDK5RAP3-209ENST00000578663 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP12.31□□□□□ -0.44
CDK5RAP3-209ENST00000578663 HNRNPUL2Q1KMD3 747 aaKnown RBP12.31□□□□□ -0.44
CDK5RAP3-209ENST00000578663 LRRC7Q96NW7 1537 aa12.29□□□□□ -0.44
CDK5RAP3-209ENST00000578663 XIRP1Q702N8 1843 aaKnown RBP12.29□□□□□ -0.44
CDK5RAP3-209ENST00000578663 KDM5CP41229 1560 aa12.29□□□□□ -0.44
CDK5RAP3-209ENST00000578663 SETBP1Q9Y6X0 1596 aa12.28□□□□□ -0.44
CDK5RAP3-209ENST00000578663 CNTLNQ9NXG0 1405 aa12.28□□□□□ -0.44
CDK5RAP3-209ENST00000578663 DNMT1P26358 1616 aaKnown RBP12.27□□□□□ -0.44
CDK5RAP3-209ENST00000578663 PLCH2O75038 1416 aa12.27□□□□□ -0.45
CDK5RAP3-209ENST00000578663 IFFO2Q5TF58 517 aa12.26□□□□□ -0.45
CDK5RAP3-209ENST00000578663 SYNMO15061 1565 aa12.25□□□□□ -0.45
CDK5RAP3-209ENST00000578663 CLTCQ00610 1675 aaKnown RBP12.24□□□□□ -0.45
CDK5RAP3-209ENST00000578663 ZNF518AQ6AHZ1 1483 aa12.24□□□□□ -0.45
CDK5RAP3-209ENST00000578663 MYO5CQ9NQX4 1742 aa12.23□□□□□ -0.45
CDK5RAP3-209ENST00000578663 ZMYM3Q14202 1370 aa12.22□□□□□ -0.45
CDK5RAP3-209ENST00000578663 TRIM52Q96A61 297 aa12.22□□□□□ -0.45
CDK5RAP3-209ENST00000578663 ESF1Q9H501 851 aaKnown RBP12.22□□□□□ -0.45
CDK5RAP3-209ENST00000578663 CDK13Q14004 1512 aaKnown RBP12.2□□□□□ -0.46
CDK5RAP3-209ENST00000578663 EFCAB2Q5VUJ9 269 aa12.19□□□□□ -0.46
CDK5RAP3-209ENST00000578663 CSRNP3Q8WYN3 585 aa12.19□□□□□ -0.46
CDK5RAP3-209ENST00000578663 A2ML1A8K2U0 1454 aa12.18□□□□□ -0.46
CDK5RAP3-209ENST00000578663 EEA1Q15075 1411 aa12.18□□□□□ -0.46
CDK5RAP3-209ENST00000578663 ROBO1Q9Y6N7 1651 aa12.17□□□□□ -0.46
CDK5RAP3-209ENST00000578663 MLH3Q9UHC1 1453 aa12.17□□□□□ -0.46
CDK5RAP3-209ENST00000578663 KIDINS220Q9ULH0 1771 aa12.17□□□□□ -0.46
CDK5RAP3-209ENST00000578663 KIF14Q15058 1648 aa12.16□□□□□ -0.46
CDK5RAP3-209ENST00000578663 AFAP1Q8N556 730 aa12.16□□□□□ -0.46
CDK5RAP3-209ENST00000578663 IQGAP1P46940 1657 aa12.16□□□□□ -0.46
CDK5RAP3-209ENST00000578663 FAM135BQ49AJ0 1406 aa12.15□□□□□ -0.46
CDK5RAP3-209ENST00000578663 DEPDC5O75140 1603 aa12.15□□□□□ -0.47
CDK5RAP3-209ENST00000578663 CDK12Q9NYV4 1490 aaPredicted RBP12.14□□□□□ -0.47
CDK5RAP3-209ENST00000578663 ITSN2Q9NZM3 1697 aa12.14□□□□□ -0.47
CDK5RAP3-209ENST00000578663 MED14O60244 1454 aa12.14□□□□□ -0.47
CDK5RAP3-209ENST00000578663 ARHGAP5Q13017 1502 aa12.13□□□□□ -0.47
CDK5RAP3-209ENST00000578663 LRP6O75581 1613 aa12.13□□□□□ -0.47
CDK5RAP3-209ENST00000578663 TROQ12816 1431 aaPredicted RBP12.12□□□□□ -0.47
CDK5RAP3-209ENST00000578663 LRP5O75197 1615 aa12.12□□□□□ -0.47
CDK5RAP3-209ENST00000578663 RBM33Q96EV2 1170 aaKnown RBP12.12□□□□□ -0.47
CDK5RAP3-209ENST00000578663 FMN1Q68DA7 1419 aa12.11□□□□□ -0.47
CDK5RAP3-209ENST00000578663 PHLPP1O60346 1717 aa12.11□□□□□ -0.47
CDK5RAP3-209ENST00000578663 ZC3H13Q5T200 1668 aaKnown RBP12.11□□□□□ -0.47
CDK5RAP3-209ENST00000578663 CDK11AQ9UQ88 783 aaPredicted RBP12.11□□□□□ -0.47
CDK5RAP3-209ENST00000578663 ABCC1P33527 1531 aa12.11□□□□□ -0.47
CDK5RAP3-209ENST00000578663 NPHP4O75161 1426 aaPredicted RBP12.11□□□□□ -0.47
CDK5RAP3-209ENST00000578663 CLIP1P30622 1438 aa12.1□□□□□ -0.47
CDK5RAP3-209ENST00000578663 PREX2Q70Z35 1606 aa12.09□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms