RNA–Protein interactions for RNA: ENST00000578519.5

SKA2-204, Transcript of spindle and kinetochore associated complex subunit 2, humanhuman

TSL 3

Gene SKA2, Length 894 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA2-204ENST00000578519 KIF14Q15058 1648 aa16.15■□□□□ 0.18
SKA2-204ENST00000578519 RSPH4AQ5TD94 716 aa16.14■□□□□ 0.17
SKA2-204ENST00000578519 NAIPQ13075 1403 aa16.13■□□□□ 0.17
SKA2-204ENST00000578519 GPATCH8Q9UKJ3 1502 aaKnown RBP16.12■□□□□ 0.17
SKA2-204ENST00000578519 DAPK1P53355 1430 aa16.11■□□□□ 0.17
SKA2-204ENST00000578519 PTPRKQ15262 1439 aa16.11■□□□□ 0.17
SKA2-204ENST00000578519 UHRF1BP1LA0JNW5 1464 aa16.11■□□□□ 0.17
SKA2-204ENST00000578519 ABCC2Q92887 1545 aa16.11■□□□□ 0.17
SKA2-204ENST00000578519 OSCARQ8IYS5 282 aa16.1■□□□□ 0.17
SKA2-204ENST00000578519 CHIC2Q9UKJ5 165 aa16.1■□□□□ 0.17
SKA2-204ENST00000578519 RRP7BPQ9NSQ0 103 aa16.09■□□□□ 0.17
SKA2-204ENST00000578519 TSPY4P0CV99 314 aa16.08■□□□□ 0.16
SKA2-204ENST00000578519 TSPY10P0CW01 314 aa16.08■□□□□ 0.16
SKA2-204ENST00000578519 ZNF777Q9ULD5 760 aaPredicted RBP16.08■□□□□ 0.16
SKA2-204ENST00000578519 DNMT1P26358 1616 aaKnown RBP16.08■□□□□ 0.16
SKA2-204ENST00000578519 TRIM52Q96A61 297 aa16.07■□□□□ 0.16
SKA2-204ENST00000578519 ABCC5O15440 1437 aa16.07■□□□□ 0.16
SKA2-204ENST00000578519 CAMSAP2Q08AD1 1489 aa16.07■□□□□ 0.16
SKA2-204ENST00000578519 ABCC10Q5T3U5 1492 aa16.06■□□□□ 0.16
SKA2-204ENST00000578519 ANKRD30AQ9BXX3 1397 aa16.06■□□□□ 0.16
SKA2-204ENST00000578519 DIEXFQ68CQ4 756 aaKnown RBP16.05■□□□□ 0.16
SKA2-204ENST00000578519 GCC2Q8IWJ2 1684 aa16.05■□□□□ 0.16
SKA2-204ENST00000578519 MAPKBP1O60336 1514 aa16.04■□□□□ 0.16
SKA2-204ENST00000578519 ZNF644Q9H582 1327 aaPredicted RBP16.02■□□□□ 0.16
SKA2-204ENST00000578519 PLEKHH2Q8IVE3 1493 aa16.02■□□□□ 0.15
SKA2-204ENST00000578519 NEUROD1Q13562 356 aa16.01■□□□□ 0.15
SKA2-204ENST00000578519 KDM5BQ9UGL1 1544 aa16■□□□□ 0.15
SKA2-204ENST00000578519 ADGRL2O95490 1459 aa16■□□□□ 0.15
SKA2-204ENST00000578519 NPM1P06748 294 aaKnown RBP eCLIP16■□□□□ 0.15
SKA2-204ENST00000578519 SHANK2Q9UPX8 1470 aa15.99■□□□□ 0.15
SKA2-204ENST00000578519 TONSLQ96HA7 1378 aa15.99■□□□□ 0.15
SKA2-204ENST00000578519 ERCC6L2Q5T890 1561 aa15.98■□□□□ 0.15
SKA2-204ENST00000578519 NCOA1Q15788 1441 aa15.97■□□□□ 0.15
SKA2-204ENST00000578519 EFCAB2Q5VUJ9 269 aa15.97■□□□□ 0.15
SKA2-204ENST00000578519 MPHOSPH9Q99550 1183 aa15.97■□□□□ 0.15
SKA2-204ENST00000578519 ARHGEF5Q12774 1597 aa15.96■□□□□ 0.14
SKA2-204ENST00000578519 CDC42BPAQ5VT25 1732 aa15.95■□□□□ 0.14
SKA2-204ENST00000578519 MAPK8IP2Q13387 824 aaPredicted RBP15.95■□□□□ 0.14
SKA2-204ENST00000578519 KCNH8Q96L42 1107 aa15.95■□□□□ 0.14
SKA2-204ENST00000578519 SIN3AQ96ST3 1273 aa15.95■□□□□ 0.14
SKA2-204ENST00000578519 ADGBQ8N7X0 1667 aa15.95■□□□□ 0.14
SKA2-204ENST00000578519 KIAA1107Q9UPP5 1409 aa15.94■□□□□ 0.14
SKA2-204ENST00000578519 PPP1R15AO75807 674 aaPredicted RBP15.93■□□□□ 0.14
SKA2-204ENST00000578519 PREX2Q70Z35 1606 aa15.93■□□□□ 0.14
SKA2-204ENST00000578519 C9orf84Q5VXU9 1444 aa15.93■□□□□ 0.14
SKA2-204ENST00000578519 CCDC141Q6ZP82 1450 aa15.92■□□□□ 0.14
SKA2-204ENST00000578519 ARHGAP5Q13017 1502 aa15.92■□□□□ 0.14
SKA2-204ENST00000578519 ZCCHC11Q5TAX3 1644 aaKnown RBP15.91■□□□□ 0.14
SKA2-204ENST00000578519 HNRNPMP52272 730 aaKnown RBP eCLIP15.91■□□□□ 0.14
SKA2-204ENST00000578519 SLC4A1APQ9BWU0 796 aaKnown RBP15.91■□□□□ 0.14
SKA2-204ENST00000578519 PLCH2O75038 1416 aa15.91■□□□□ 0.14
SKA2-204ENST00000578519 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP15.9■□□□□ 0.14
SKA2-204ENST00000578519 ANKRD50Q9ULJ7 1429 aa15.9■□□□□ 0.14
SKA2-204ENST00000578519 CROCC2H7BZ55 1655 aa15.89■□□□□ 0.13
SKA2-204ENST00000578519 MBD5Q9P267 1494 aa15.88■□□□□ 0.13
SKA2-204ENST00000578519 MYO5CQ9NQX4 1742 aa15.87■□□□□ 0.13
SKA2-204ENST00000578519 ARAP3Q8WWN8 1544 aa15.87■□□□□ 0.13
SKA2-204ENST00000578519 WDR7Q9Y4E6 1490 aa15.86■□□□□ 0.13
SKA2-204ENST00000578519 KIF15Q9NS87 1388 aa15.85■□□□□ 0.13
SKA2-204ENST00000578519 SAMD9LQ8IVG5 1584 aa15.84■□□□□ 0.13
SKA2-204ENST00000578519 CDC42BPBQ9Y5S2 1711 aa15.84■□□□□ 0.13
SKA2-204ENST00000578519 MAST1Q9Y2H9 1570 aa15.83■□□□□ 0.13
SKA2-204ENST00000578519 TTC37Q6PGP7 1564 aa15.83■□□□□ 0.12
SKA2-204ENST00000578519 KDM6BO15054 1643 aa15.81■□□□□ 0.12
SKA2-204ENST00000578519 NUP155O75694 1391 aa15.81■□□□□ 0.12
SKA2-204ENST00000578519 ANKRD30BQ9BXX2 1392 aa15.81■□□□□ 0.12
SKA2-204ENST00000578519 RNF39Q9H2S5 420 aa15.8■□□□□ 0.12
SKA2-204ENST00000578519 SYCP2Q9BX26 1530 aa15.78■□□□□ 0.12
SKA2-204ENST00000578519 RTEL1-TNFRSF6BF6WH68 1400 aa15.78■□□□□ 0.12
SKA2-204ENST00000578519 ASXL2Q76L83 1435 aa15.78■□□□□ 0.12
SKA2-204ENST00000578519 PKD2Q13563 968 aa15.77■□□□□ 0.12
SKA2-204ENST00000578519 SPAG9O60271 1321 aaKnown RBP15.76■□□□□ 0.11
SKA2-204ENST00000578519 KDM5DQ9BY66 1539 aa15.76■□□□□ 0.11
SKA2-204ENST00000578519 PZPP20742 1482 aa15.76■□□□□ 0.11
SKA2-204ENST00000578519 RPRD2Q5VT52 1461 aaKnown RBP15.76■□□□□ 0.11
SKA2-204ENST00000578519 DUOX2Q9NRD8 1548 aa15.75■□□□□ 0.11
SKA2-204ENST00000578519 PLXNC1O60486 1568 aa15.75■□□□□ 0.11
SKA2-204ENST00000578519 ABCA9Q8IUA7 1624 aa15.74■□□□□ 0.11
SKA2-204ENST00000578519 ERBINQ96RT1 1412 aa15.74■□□□□ 0.11
SKA2-204ENST00000578519 ABCC1P33527 1531 aa15.73■□□□□ 0.11
SKA2-204ENST00000578519 DENND4BO75064 1496 aaPredicted RBP15.73■□□□□ 0.11
SKA2-204ENST00000578519 CENPBP07199 599 aaPredicted RBP15.73■□□□□ 0.11
SKA2-204ENST00000578519 POTEHQ6S545 545 aa15.72■□□□□ 0.11
SKA2-204ENST00000578519 FANCAO15360 1455 aa15.71■□□□□ 0.11
SKA2-204ENST00000578519 L3MBTL2Q969R5 705 aa15.71■□□□□ 0.11
SKA2-204ENST00000578519 MYT1LQ9UL68 1186 aa15.7■□□□□ 0.1
SKA2-204ENST00000578519 EIF4G2P78344 907 aaKnown RBP eCLIP15.69■□□□□ 0.16e-6■■■■□ 25.1
SKA2-204ENST00000578519 CFAP74Q9C0B2 1584 aa15.68■□□□□ 0.1
SKA2-204ENST00000578519 ARHGEF12Q9NZN5 1544 aa15.68■□□□□ 0.1
SKA2-204ENST00000578519 CD109Q6YHK3 1445 aa15.67■□□□□ 0.1
SKA2-204ENST00000578519 SCAPERQ9BY12 1400 aa15.67■□□□□ 0.1
SKA2-204ENST00000578519 TRAPPC8Q9Y2L5 1435 aa15.67■□□□□ 0.1
SKA2-204ENST00000578519 ADGRL1O94910 1474 aa15.66■□□□□ 0.1
SKA2-204ENST00000578519 KANK1Q14678 1352 aa15.66■□□□□ 0.1
SKA2-204ENST00000578519 MIER1Q8N108 512 aa15.66■□□□□ 0.1
SKA2-204ENST00000578519 GRWD1Q9BQ67 446 aaKnown RBP eCLIP15.65■□□□□ 0.12e-10■□□□□ 10.6
SKA2-204ENST00000578519 UNC13BO14795 1591 aa15.64■□□□□ 0.09
SKA2-204ENST00000578519 AFAP1Q8N556 730 aa15.64■□□□□ 0.09
SKA2-204ENST00000578519 FAM135AQ9P2D6 1515 aa15.63■□□□□ 0.09
SKA2-204ENST00000578519 ZNF518AQ6AHZ1 1483 aa15.61■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 7.5 ms