RNA–Protein interactions for RNA: ENST00000571249.1

CHD3-213, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 3

Gene CHD3, Length 330 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-213ENST00000571249 POTEAQ6S8J7 498 aa12.57□□□□□ -0.4
CHD3-213ENST00000571249 EHMT2Q96KQ7 1210 aa12.57□□□□□ -0.4
CHD3-213ENST00000571249 FHOD3Q2V2M9 1422 aa12.56□□□□□ -0.4
CHD3-213ENST00000571249 KIF27Q86VH2 1401 aa12.56□□□□□ -0.4
CHD3-213ENST00000571249 RICTORQ6R327 1708 aa12.55□□□□□ -0.4
CHD3-213ENST00000571249 TOM1O60784 492 aa12.55□□□□□ -0.4
CHD3-213ENST00000571249 ZFYVE16Q7Z3T8 1539 aa12.54□□□□□ -0.4
CHD3-213ENST00000571249 ATP10BO94823 1461 aa12.53□□□□□ -0.4
CHD3-213ENST00000571249 CAMSAP1Q5T5Y3 1602 aa12.49□□□□□ -0.41
CHD3-213ENST00000571249 EFCAB5A4FU69 1503 aa12.48□□□□□ -0.41
CHD3-213ENST00000571249 ZMYM4Q5VZL5 1548 aa12.47□□□□□ -0.41
CHD3-213ENST00000571249 TRAPPC8Q9Y2L5 1435 aa12.46□□□□□ -0.41
CHD3-213ENST00000571249 HECW1Q76N89 1606 aa12.46□□□□□ -0.41
CHD3-213ENST00000571249 ATP10AO60312 1499 aa12.46□□□□□ -0.42
CHD3-213ENST00000571249 UPF1Q92900 1129 aaKnown RBP eCLIP12.45□□□□□ -0.42
CHD3-213ENST00000571249 MAGI2Q86UL8 1455 aa12.45□□□□□ -0.42
CHD3-213ENST00000571249 SETD1AO15047 1707 aaKnown RBP12.45□□□□□ -0.42
CHD3-213ENST00000571249 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP12.44□□□□□ -0.42
CHD3-213ENST00000571249 HNRNPUL2Q1KMD3 747 aaKnown RBP12.44□□□□□ -0.42
CHD3-213ENST00000571249 ALKQ9UM73 1620 aa12.44□□□□□ -0.42
CHD3-213ENST00000571249 C3P01024 1663 aa12.42□□□□□ -0.42
CHD3-213ENST00000571249 PPP6R1Q9UPN7 881 aa12.42□□□□□ -0.42
CHD3-213ENST00000571249 C9orf84Q5VXU9 1444 aa12.42□□□□□ -0.42
CHD3-213ENST00000571249 P3H3Q8IVL6 736 aa12.41□□□□□ -0.42
CHD3-213ENST00000571249 PKD2Q13563 968 aa12.4□□□□□ -0.42
CHD3-213ENST00000571249 SCAPERQ9BY12 1400 aa12.38□□□□□ -0.43
CHD3-213ENST00000571249 ESF1Q9H501 851 aaKnown RBP12.36□□□□□ -0.43
CHD3-213ENST00000571249 GOLGA3Q08378 1498 aa12.35□□□□□ -0.43
CHD3-213ENST00000571249 RAPGEF2Q9Y4G8 1499 aa12.35□□□□□ -0.43
CHD3-213ENST00000571249 PTPRKQ15262 1439 aa12.35□□□□□ -0.43
CHD3-213ENST00000571249 TCOF1Q13428 1488 aaKnown RBP12.34□□□□□ -0.43
CHD3-213ENST00000571249 SHANK2Q9UPX8 1470 aa12.33□□□□□ -0.44
CHD3-213ENST00000571249 CPS1P31327 1500 aa12.32□□□□□ -0.44
CHD3-213ENST00000571249 AFAP1Q8N556 730 aa12.31□□□□□ -0.44
CHD3-213ENST00000571249 PLA2R1Q13018 1463 aa12.3□□□□□ -0.44
CHD3-213ENST00000571249 SUPT5HO00267 1087 aaKnown RBP12.3□□□□□ -0.44
CHD3-213ENST00000571249 MYT1LQ9UL68 1186 aa12.3□□□□□ -0.44
CHD3-213ENST00000571249 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP12.3□□□□□ -0.44
CHD3-213ENST00000571249 PLEKHD1A6NEE1 506 aa12.29□□□□□ -0.44
CHD3-213ENST00000571249 CFAP74Q9C0B2 1584 aa12.29□□□□□ -0.44
CHD3-213ENST00000571249 TRIM52Q96A61 297 aa12.28□□□□□ -0.44
CHD3-213ENST00000571249 FAM9AQ8IZU1 332 aaPredicted RBP12.27□□□□□ -0.45
CHD3-213ENST00000571249 ZMYM3Q14202 1370 aa12.27□□□□□ -0.45
CHD3-213ENST00000571249 NPATQ14207 1427 aa12.27□□□□□ -0.45
CHD3-213ENST00000571249 KCNA4P22459 653 aa12.26□□□□□ -0.45
CHD3-213ENST00000571249 NUP153P49790 1475 aaKnown RBP12.23□□□□□ -0.45
CHD3-213ENST00000571249 DIP2CQ9Y2E4 1556 aa12.22□□□□□ -0.45
CHD3-213ENST00000571249 VWDEQ8N2E2 1590 aa12.22□□□□□ -0.45
CHD3-213ENST00000571249 CEP170BQ9Y4F5 1589 aaPredicted RBP12.22□□□□□ -0.45
CHD3-213ENST00000571249 AGLP35573 1532 aa12.21□□□□□ -0.45
CHD3-213ENST00000571249 PLCH2O75038 1416 aa12.21□□□□□ -0.45
CHD3-213ENST00000571249 CNTLNQ9NXG0 1405 aa12.21□□□□□ -0.45
CHD3-213ENST00000571249 SUPT6HQ7KZ85 1726 aaKnown RBP12.2□□□□□ -0.46
CHD3-213ENST00000571249 CTTNBP2Q8WZ74 1663 aa12.2□□□□□ -0.46
CHD3-213ENST00000571249 RAPGEF6Q8TEU7 1601 aa12.2□□□□□ -0.46
CHD3-213ENST00000571249 MYO3AQ8NEV4 1616 aa12.19□□□□□ -0.46
CHD3-213ENST00000571249 EFCAB2Q5VUJ9 269 aa12.19□□□□□ -0.46
CHD3-213ENST00000571249 NEURL4Q96JN8 1562 aa12.18□□□□□ -0.46
CHD3-213ENST00000571249 LRRC7Q96NW7 1537 aa12.18□□□□□ -0.46
CHD3-213ENST00000571249 ZNF142P52746 1687 aaPredicted RBP12.18□□□□□ -0.46
CHD3-213ENST00000571249 REREQ9P2R6 1566 aa12.17□□□□□ -0.46
CHD3-213ENST00000571249 ZNF518AQ6AHZ1 1483 aa12.16□□□□□ -0.46
CHD3-213ENST00000571249 ABCA6Q8N139 1617 aa12.16□□□□□ -0.46
CHD3-213ENST00000571249 KDM5CP41229 1560 aa12.15□□□□□ -0.46
CHD3-213ENST00000571249 STRCP1A6NGW2 1772 aa12.14□□□□□ -0.47
CHD3-213ENST00000571249 DNMT1P26358 1616 aaKnown RBP12.13□□□□□ -0.47
CHD3-213ENST00000571249 ANKLE2Q86XL3 938 aa12.13□□□□□ -0.47
CHD3-213ENST00000571249 SETBP1Q9Y6X0 1596 aa12.13□□□□□ -0.47
CHD3-213ENST00000571249 IFFO2Q5TF58 517 aa12.12□□□□□ -0.47
CHD3-213ENST00000571249 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP12.12□□□□□ -0.47
CHD3-213ENST00000571249 A2ML1A8K2U0 1454 aa12.12□□□□□ -0.47
CHD3-213ENST00000571249 RNF17Q9BXT8 1623 aaKnown RBP12.11□□□□□ -0.47
CHD3-213ENST00000571249 MROH2AA6NES4 1674 aa12.11□□□□□ -0.47
CHD3-213ENST00000571249 RBM33Q96EV2 1170 aaKnown RBP12.11□□□□□ -0.47
CHD3-213ENST00000571249 FAM135BQ49AJ0 1406 aa12.11□□□□□ -0.47
CHD3-213ENST00000571249 MLH3Q9UHC1 1453 aa12.1□□□□□ -0.47
CHD3-213ENST00000571249 RXRBP28702 533 aa12.1□□□□□ -0.47
CHD3-213ENST00000571249 ZRANB1Q9UGI0 708 aa12.1□□□□□ -0.47
CHD3-213ENST00000571249 RANGAP1P46060 587 aaPredicted RBP12.09□□□□□ -0.47
CHD3-213ENST00000571249 ZNF772Q68DY9 489 aaPredicted RBP12.09□□□□□ -0.47
CHD3-213ENST00000571249 NPHP4O75161 1426 aaPredicted RBP12.09□□□□□ -0.47
CHD3-213ENST00000571249 POLR1AO95602 1720 aaPredicted RBP12.08□□□□□ -0.47
CHD3-213ENST00000571249 CLTCQ00610 1675 aaKnown RBP12.08□□□□□ -0.48
CHD3-213ENST00000571249 FBXO31Q5XUX0 539 aaPredicted RBP12.08□□□□□ -0.48
CHD3-213ENST00000571249 GGT6Q6P531 493 aa12.06□□□□□ -0.48
CHD3-213ENST00000571249 ADRA2BP18089 450 aa12.05□□□□□ -0.48
CHD3-213ENST00000571249 MEX3CQ5U5Q3 659 aaKnown RBP12.04□□□□□ -0.48
CHD3-213ENST00000571249 CDK13Q14004 1512 aaKnown RBP12.04□□□□□ -0.48
CHD3-213ENST00000571249 LRP6O75581 1613 aa12.04□□□□□ -0.48
CHD3-213ENST00000571249 MED14O60244 1454 aa12.03□□□□□ -0.48
CHD3-213ENST00000571249 SAMD9Q5K651 1589 aa12.03□□□□□ -0.48
CHD3-213ENST00000571249 ARHGAP5Q13017 1502 aa12.02□□□□□ -0.48
CHD3-213ENST00000571249 THEMISQ8N1K5 641 aaPredicted RBP12.02□□□□□ -0.49
CHD3-213ENST00000571249 JCADQ9P266 1359 aa12.02□□□□□ -0.49
CHD3-213ENST00000571249 KIDINS220Q9ULH0 1771 aa12.02□□□□□ -0.49
CHD3-213ENST00000571249 ABCC1P33527 1531 aa12.01□□□□□ -0.49
CHD3-213ENST00000571249 NUTM2BA6NNL0 878 aaPredicted RBP12.01□□□□□ -0.49
CHD3-213ENST00000571249 NUTM2EB1AL46 878 aaPredicted RBP12.01□□□□□ -0.49
CHD3-213ENST00000571249 NUTM2DQ5VT03 806 aaPredicted RBP12.01□□□□□ -0.49
CHD3-213ENST00000571249 NUTM2AQ8IVF1 878 aaPredicted RBP12.01□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 15.1 ms