RNA–Protein interactions for RNA: ENST00000570546.5

CIITA-204, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 2

Gene CIITA, Length 5,342 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-204ENST00000570546 NCLP19338 710 aaKnown RBP19.8■□□□□ 0.76
CIITA-204ENST00000570546 U2SURPO15042 1029 aaKnown RBP19.8■□□□□ 0.76
CIITA-204ENST00000570546 RTN4Q9NQC3 1192 aaKnown RBP19.79■□□□□ 0.76
CIITA-204ENST00000570546 CCDC18Q5T9S5 1454 aa19.78■□□□□ 0.76
CIITA-204ENST00000570546 KIF21BO75037 1637 aa19.77■□□□□ 0.76
CIITA-204ENST00000570546 ZBTB7CA1YPR0 619 aa19.77■□□□□ 0.76
CIITA-204ENST00000570546 MORC1Q86VD1 984 aa19.77■□□□□ 0.76
CIITA-204ENST00000570546 C14orf37Q86TY3 774 aa19.77■□□□□ 0.75
CIITA-204ENST00000570546 TCERG1O14776 1098 aaKnown RBP19.75■□□□□ 0.75
CIITA-204ENST00000570546 CHMP4BQ9H444 224 aaKnown RBP19.75■□□□□ 0.75
CIITA-204ENST00000570546 PNNQ9H307 717 aaKnown RBP19.74■□□□□ 0.75
CIITA-204ENST00000570546 HSP90AB1P08238 724 aaKnown RBP19.71■□□□□ 0.75
CIITA-204ENST00000570546 PLEKHG5O94827 1062 aa19.68■□□□□ 0.74
CIITA-204ENST00000570546 FANCD2Q9BXW9 1451 aa19.67■□□□□ 0.74
CIITA-204ENST00000570546 HNRNPMP52272 730 aaKnown RBP eCLIP19.67■□□□□ 0.74
CIITA-204ENST00000570546 NLRP13Q86W25 1043 aa19.67■□□□□ 0.74
CIITA-204ENST00000570546 SRPK2P78362 688 aaKnown RBP19.66■□□□□ 0.74
CIITA-204ENST00000570546 KIF15Q9NS87 1388 aa19.66■□□□□ 0.74
CIITA-204ENST00000570546 HSCBQ8IWL3 235 aa19.66■□□□□ 0.74
CIITA-204ENST00000570546 IPO9Q96P70 1041 aaKnown RBP19.66■□□□□ 0.74
CIITA-204ENST00000570546 IGF1RP08069 1367 aa19.66■□□□□ 0.74
CIITA-204ENST00000570546 PRKRIP1Q9H875 184 aaPredicted RBP19.66■□□□□ 0.74
CIITA-204ENST00000570546 PDE3BQ13370 1112 aa19.64■□□□□ 0.74
CIITA-204ENST00000570546 PTMAP06454 111 aaKnown RBP19.64■□□□□ 0.73
CIITA-204ENST00000570546 SAFB2Q14151 953 aaKnown RBP eCLIP19.62■□□□□ 0.73
CIITA-204ENST00000570546 MYBBP1AQ9BQG0 1328 aaKnown RBP19.62■□□□□ 0.73
CIITA-204ENST00000570546 ARID4BQ4LE39 1312 aaPredicted RBP19.62■□□□□ 0.73
CIITA-204ENST00000570546 EIF3AQ14152 1382 aaKnown RBP19.62■□□□□ 0.73
CIITA-204ENST00000570546 FGD5Q6ZNL6 1462 aa19.62■□□□□ 0.73
CIITA-204ENST00000570546 NAP1L5Q96NT1 182 aaPredicted RBP19.61■□□□□ 0.73
CIITA-204ENST00000570546 ZBED9Q6R2W3 1325 aa19.61■□□□□ 0.73
CIITA-204ENST00000570546 EFCAB2Q5VUJ9 269 aa19.61■□□□□ 0.73
CIITA-204ENST00000570546 SPRYD3Q8NCJ5 442 aa19.61■□□□□ 0.73
CIITA-204ENST00000570546 PHLDB1Q86UU1 1377 aa19.6■□□□□ 0.73
CIITA-204ENST00000570546 GOLGA2Q08379 1002 aa19.6■□□□□ 0.73
CIITA-204ENST00000570546 LRRC9Q6ZRR7 1453 aa19.59■□□□□ 0.73
CIITA-204ENST00000570546 ST20-MTHFSA0A0A6YYL1 179 aa19.59■□□□□ 0.73
CIITA-204ENST00000570546 TPRNQ4KMQ1 711 aa19.58■□□□□ 0.73
CIITA-204ENST00000570546 L1TD1Q5T7N2 865 aaKnown RBP19.58■□□□□ 0.73
CIITA-204ENST00000570546 FGD6Q6ZV73 1430 aa19.58■□□□□ 0.73
CIITA-204ENST00000570546 GGT6Q6P531 493 aa19.57■□□□□ 0.72
CIITA-204ENST00000570546 RSPH4AQ5TD94 716 aa19.57■□□□□ 0.72
CIITA-204ENST00000570546 RWDD1Q9H446 243 aaPredicted RBP19.56■□□□□ 0.72
CIITA-204ENST00000570546 USP47Q96K76 1375 aa19.56■□□□□ 0.72
CIITA-204ENST00000570546 U2AF1L5P0DN76 240 aaPredicted RBP19.56■□□□□ 0.72
CIITA-204ENST00000570546 U2AF1Q01081 240 aaKnown RBP eCLIP19.56■□□□□ 0.72
CIITA-204ENST00000570546 SYNJ1O43426 1573 aa19.55■□□□□ 0.72
CIITA-204ENST00000570546 CCDC146Q8IYE0 955 aa19.55■□□□□ 0.72
CIITA-204ENST00000570546 STK26Q9P289 416 aa19.55■□□□□ 0.72
CIITA-204ENST00000570546 ERICH3Q5RHP9 1530 aa19.55■□□□□ 0.72
CIITA-204ENST00000570546 IPO8O15397 1037 aaKnown RBP19.55■□□□□ 0.72
CIITA-204ENST00000570546 CUX1P39880 1505 aa19.54■□□□□ 0.72
CIITA-204ENST00000570546 UACAQ9BZF9 1416 aa19.53■□□□□ 0.72
CIITA-204ENST00000570546 MYOM3Q5VTT5 1437 aa19.53■□□□□ 0.72
CIITA-204ENST00000570546 HDGFL2Q7Z4V5 671 aaPredicted RBP19.53■□□□□ 0.72
CIITA-204ENST00000570546 RRBP1Q9P2E9 1410 aaKnown RBP19.53■□□□□ 0.72
CIITA-204ENST00000570546 DNTTIP2Q5QJE6 756 aaKnown RBP19.52■□□□□ 0.72
CIITA-204ENST00000570546 PMFBP1Q8TBY8 1022 aa19.52■□□□□ 0.72
CIITA-204ENST00000570546 CCDC144AA2RUR9 1427 aa19.52■□□□□ 0.72
CIITA-204ENST00000570546 ITPRIPQ8IWB1 547 aa19.52■□□□□ 0.71
CIITA-204ENST00000570546 ARAP1Q96P48 1450 aa19.51■□□□□ 0.71
CIITA-204ENST00000570546 PANK3Q9H999 370 aa19.5■□□□□ 0.71
CIITA-204ENST00000570546 RAD54L2Q9Y4B4 1467 aa19.5■□□□□ 0.71
CIITA-204ENST00000570546 JPH4Q96JJ6 628 aa19.5■□□□□ 0.71
CIITA-204ENST00000570546 RRP1P56182 461 aaKnown RBP19.49■□□□□ 0.71
CIITA-204ENST00000570546 KIF3BO15066 747 aa19.49■□□□□ 0.71
CIITA-204ENST00000570546 SLKQ9H2G2 1235 aaPredicted RBP19.49■□□□□ 0.71
CIITA-204ENST00000570546 OS9Q13438 667 aaPredicted RBP19.48■□□□□ 0.71
CIITA-204ENST00000570546 CENPJQ9HC77 1338 aaPredicted RBP19.48■□□□□ 0.71
CIITA-204ENST00000570546 CFAP44Q96MT7 982 aa19.47■□□□□ 0.71
CIITA-204ENST00000570546 GAPVD1Q14C86 1478 aa19.47■□□□□ 0.71
CIITA-204ENST00000570546 CCDC7Q96M83 1385 aa19.47■□□□□ 0.71
CIITA-204ENST00000570546 EXOC6Q8TAG9 804 aa19.47■□□□□ 0.71
CIITA-204ENST00000570546 FANCIQ9NVI1 1328 aa19.46■□□□□ 0.71
CIITA-204ENST00000570546 SPAG9O60271 1321 aaKnown RBP19.46■□□□□ 0.71
CIITA-204ENST00000570546 CASKIN1Q8WXD9 1431 aa19.46■□□□□ 0.71
CIITA-204ENST00000570546 ZRSR1Q15695 479 aaKnown RBP19.46■□□□□ 0.71
CIITA-204ENST00000570546 CNTLNQ9NXG0 1405 aa19.45■□□□□ 0.7
CIITA-204ENST00000570546 HAP1P54257 671 aaPredicted RBP19.45■□□□□ 0.7
CIITA-204ENST00000570546 CALD1Q05682 793 aaKnown RBP19.44■□□□□ 0.7
CIITA-204ENST00000570546 A0A0G2JS52 829 aa19.44■□□□□ 0.7
CIITA-204ENST00000570546 SOX12O15370 315 aa19.44■□□□□ 0.7
CIITA-204ENST00000570546 HDGFP51858 240 aaKnown RBP19.44■□□□□ 0.7
CIITA-204ENST00000570546 PDE4AP27815 886 aa19.44■□□□□ 0.7
CIITA-204ENST00000570546 PLIN1O60240 522 aa19.44■□□□□ 0.7
CIITA-204ENST00000570546 SMC4Q9NTJ3 1288 aa19.44■□□□□ 0.7
CIITA-204ENST00000570546 MCCP23508 829 aa19.43■□□□□ 0.7
CIITA-204ENST00000570546 PLCB2Q00722 1185 aa19.43■□□□□ 0.7
CIITA-204ENST00000570546 KIF7Q2M1P5 1343 aa19.43■□□□□ 0.7
CIITA-204ENST00000570546 NCAPD3P42695 1498 aa19.42■□□□□ 0.7
CIITA-204ENST00000570546 MLECQ14165 292 aa19.42■□□□□ 0.7
CIITA-204ENST00000570546 CENPQQ7L2Z9 268 aaPredicted RBP19.42■□□□□ 0.7
CIITA-204ENST00000570546 NCOA2Q15596 1464 aa19.42■□□□□ 0.7
CIITA-204ENST00000570546 MFAP1P55081 439 aaKnown RBP19.41■□□□□ 0.7
CIITA-204ENST00000570546 CLUAP1Q96AJ1 413 aa19.41■□□□□ 0.7
CIITA-204ENST00000570546 GBP4Q96PP9 640 aa19.41■□□□□ 0.7
CIITA-204ENST00000570546 FYCO1Q9BQS8 1478 aa19.4■□□□□ 0.7
CIITA-204ENST00000570546 KCNJ4P48050 445 aa19.4■□□□□ 0.7
CIITA-204ENST00000570546 RTF1Q92541 710 aaKnown RBP19.4■□□□□ 0.7
CIITA-204ENST00000570546 CRBNQ96SW2 442 aa19.4■□□□□ 0.7
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms