RNA–Protein interactions for RNA: ENST00000570287.6

TCF4-246, Transcript of transcription factor 4, humanhuman

TSL 1 (best) BASIC

Gene TCF4, Length 3,163 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCF4-246ENST00000570287 FOXD4L4Q8WXT5 416 aaPredicted RBP11.58□□□□□ -0.56
TCF4-246ENST00000570287 RAD54L2Q9Y4B4 1467 aa11.57□□□□□ -0.56
TCF4-246ENST00000570287 CLSPNQ9HAW4 1339 aa11.57□□□□□ -0.56
TCF4-246ENST00000570287 KANK4Q5T7N3 995 aaPredicted RBP11.57□□□□□ -0.56
TCF4-246ENST00000570287 ANP32EQ9BTT0 268 aa11.57□□□□□ -0.56
TCF4-246ENST00000570287 MAP3K1Q13233 1512 aa11.57□□□□□ -0.56
TCF4-246ENST00000570287 MTMR7Q9Y216 660 aa11.56□□□□□ -0.56
TCF4-246ENST00000570287 RRBP1Q9P2E9 1410 aaKnown RBP11.56□□□□□ -0.56
TCF4-246ENST00000570287 CUL7Q14999 1698 aa11.56□□□□□ -0.56
TCF4-246ENST00000570287 CCDC82Q8N4S0 544 aa11.55□□□□□ -0.56
TCF4-246ENST00000570287 CADPS2Q86UW7 1296 aa11.54□□□□□ -0.56
TCF4-246ENST00000570287 ZNF316A6NFI3 1004 aaPredicted RBP11.54□□□□□ -0.56
TCF4-246ENST00000570287 URB2Q14146 1524 aaKnown RBP11.54□□□□□ -0.56
TCF4-246ENST00000570287 WDR97A6NE52 1622 aa11.54□□□□□ -0.56
TCF4-246ENST00000570287 PDS5BQ9NTI5 1447 aa11.53□□□□□ -0.56
TCF4-246ENST00000570287 P3H3Q8IVL6 736 aa11.53□□□□□ -0.56
TCF4-246ENST00000570287 TIAM1Q13009 1591 aa11.52□□□□□ -0.57
TCF4-246ENST00000570287 FHAD1B1AJZ9 1412 aa11.52□□□□□ -0.57
TCF4-246ENST00000570287 CHMP4AQ9BY43 222 aa11.51□□□□□ -0.57
TCF4-246ENST00000570287 GRWD1Q9BQ67 446 aaKnown RBP eCLIP11.51□□□□□ -0.57
TCF4-246ENST00000570287 EFCAB5A4FU69 1503 aa11.5□□□□□ -0.57
TCF4-246ENST00000570287 AEBP1Q8IUX7 1158 aa11.5□□□□□ -0.57
TCF4-246ENST00000570287 RGS22Q8NE09 1264 aa11.5□□□□□ -0.57
TCF4-246ENST00000570287 SEMA3EO15041 775 aa11.49□□□□□ -0.57
TCF4-246ENST00000570287 RBM25P49756 843 aaKnown RBP11.49□□□□□ -0.57
TCF4-246ENST00000570287 CCNB3Q8WWL7 1395 aa11.49□□□□□ -0.57
TCF4-246ENST00000570287 CTTNBP2Q8WZ74 1663 aa11.49□□□□□ -0.57
TCF4-246ENST00000570287 ABCA5Q8WWZ7 1642 aa11.48□□□□□ -0.57
TCF4-246ENST00000570287 CFAP43Q8NDM7 1665 aa11.47□□□□□ -0.57
TCF4-246ENST00000570287 UBE2Q2Q8WVN8 375 aa11.47□□□□□ -0.57
TCF4-246ENST00000570287 LRRC9Q6ZRR7 1453 aa11.47□□□□□ -0.57
TCF4-246ENST00000570287 STK25O00506 426 aa11.46□□□□□ -0.57
TCF4-246ENST00000570287 KIF21AQ7Z4S6 1674 aa11.46□□□□□ -0.57
TCF4-246ENST00000570287 CDK11BP21127 795 aaKnown RBP11.46□□□□□ -0.58
TCF4-246ENST00000570287 MIER1Q8N108 512 aa11.46□□□□□ -0.58
TCF4-246ENST00000570287 CDK11AQ9UQ88 783 aaPredicted RBP11.46□□□□□ -0.58
TCF4-246ENST00000570287 PCF11O94913 1555 aaKnown RBP11.45□□□□□ -0.58
TCF4-246ENST00000570287 AQRO60306 1485 aaKnown RBP eCLIP11.45□□□□□ -0.58
TCF4-246ENST00000570287 POLA2Q14181 598 aa11.45□□□□□ -0.58
TCF4-246ENST00000570287 DHX57Q6P158 1386 aaKnown RBP11.45□□□□□ -0.58
TCF4-246ENST00000570287 GAPVD1Q14C86 1478 aa11.44□□□□□ -0.58
TCF4-246ENST00000570287 FYCO1Q9BQS8 1478 aa11.44□□□□□ -0.58
TCF4-246ENST00000570287 FHOD3Q2V2M9 1422 aa11.43□□□□□ -0.58
TCF4-246ENST00000570287 CASKIN1Q8WXD9 1431 aa11.43□□□□□ -0.58
TCF4-246ENST00000570287 SUPT16HQ9Y5B9 1047 aaKnown RBP11.42□□□□□ -0.58
TCF4-246ENST00000570287 TDRD9Q8NDG6 1382 aaKnown RBP11.42□□□□□ -0.58
TCF4-246ENST00000570287 ZMYND10O75800 440 aa11.42□□□□□ -0.58
TCF4-246ENST00000570287 TARBP1Q13395 1621 aaKnown RBP11.42□□□□□ -0.58
TCF4-246ENST00000570287 YTHDC1Q96MU7 727 aaKnown RBP11.41□□□□□ -0.58
TCF4-246ENST00000570287 CLUAP1Q96AJ1 413 aa11.4□□□□□ -0.58
TCF4-246ENST00000570287 FMN1Q68DA7 1419 aa11.4□□□□□ -0.58
TCF4-246ENST00000570287 DCAF8L1A6NGE4 600 aa11.39□□□□□ -0.59
TCF4-246ENST00000570287 SAMD9Q5K651 1589 aa11.39□□□□□ -0.59
TCF4-246ENST00000570287 PHLDB1Q86UU1 1377 aa11.38□□□□□ -0.59
TCF4-246ENST00000570287 KDM4CQ9H3R0 1056 aa11.38□□□□□ -0.59
TCF4-246ENST00000570287 WDR70Q9NW82 654 aa11.37□□□□□ -0.59
TCF4-246ENST00000570287 SNAPC4Q5SXM2 1469 aa11.36□□□□□ -0.59
TCF4-246ENST00000570287 MRC2Q9UBG0 1479 aa11.36□□□□□ -0.59
TCF4-246ENST00000570287 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP11.35□□□□□ -0.59
TCF4-246ENST00000570287 PBRM1Q86U86 1689 aa11.35□□□□□ -0.59
TCF4-246ENST00000570287 ATP1B4Q9UN42 357 aaPredicted RBP11.34□□□□□ -0.59
TCF4-246ENST00000570287 RAB3GAP2Q9H2M9 1393 aa11.34□□□□□ -0.59
TCF4-246ENST00000570287 ITGAEP38570 1179 aa11.34□□□□□ -0.59
TCF4-246ENST00000570287 THOC2Q8NI27 1593 aaKnown RBP11.33□□□□□ -0.6
TCF4-246ENST00000570287 SETD5Q9C0A6 1442 aa11.33□□□□□ -0.6
TCF4-246ENST00000570287 MFAP1P55081 439 aaKnown RBP11.32□□□□□ -0.6
TCF4-246ENST00000570287 GRIN2BQ13224 1484 aa11.31□□□□□ -0.6
TCF4-246ENST00000570287 HSP90B1P14625 803 aaKnown RBP11.31□□□□□ -0.6
TCF4-246ENST00000570287 ADAMTS12P58397 1594 aa11.31□□□□□ -0.6
TCF4-246ENST00000570287 DHX37Q8IY37 1157 aaKnown RBP11.3□□□□□ -0.6
TCF4-246ENST00000570287 FAM50AQ14320 339 aaKnown RBP11.3□□□□□ -0.6
TCF4-246ENST00000570287 GZF1Q9H116 711 aaPredicted RBP11.3□□□□□ -0.6
TCF4-246ENST00000570287 FAM117AQ9C073 453 aa11.29□□□□□ -0.6
TCF4-246ENST00000570287 IFT140Q96RY7 1462 aa11.29□□□□□ -0.6
TCF4-246ENST00000570287 TMCO4Q5TGY1 634 aa11.29□□□□□ -0.6
TCF4-246ENST00000570287 LRRIQ1Q96JM4 1722 aa11.29□□□□□ -0.6
TCF4-246ENST00000570287 WDR62O43379 1518 aa11.28□□□□□ -0.6
TCF4-246ENST00000570287 MSH5O43196 834 aa11.28□□□□□ -0.6
TCF4-246ENST00000570287 BCL11BQ9C0K0 894 aaPredicted RBP11.28□□□□□ -0.6
TCF4-246ENST00000570287 MTUS2Q5JR59 1369 aa11.28□□□□□ -0.6
TCF4-246ENST00000570287 RIOK3O14730 519 aaKnown RBP11.28□□□□□ -0.6
TCF4-246ENST00000570287 MAPKBP1O60336 1514 aa11.28□□□□□ -0.6
TCF4-246ENST00000570287 FGD6Q6ZV73 1430 aa11.28□□□□□ -0.6
TCF4-246ENST00000570287 IQGAP2Q13576 1575 aa11.27□□□□□ -0.6
TCF4-246ENST00000570287 TESPA1A2RU30 521 aaPredicted RBP11.27□□□□□ -0.6
TCF4-246ENST00000570287 EHBP1L1Q8N3D4 1523 aa11.26□□□□□ -0.61
TCF4-246ENST00000570287 STK24Q9Y6E0 443 aa11.26□□□□□ -0.61
TCF4-246ENST00000570287 CCDC18Q5T9S5 1454 aa11.26□□□□□ -0.61
TCF4-246ENST00000570287 SUPT6HQ7KZ85 1726 aaKnown RBP11.25□□□□□ -0.61
TCF4-246ENST00000570287 NCOA2Q15596 1464 aa11.24□□□□□ -0.61
TCF4-246ENST00000570287 HECW1Q76N89 1606 aa11.24□□□□□ -0.61
TCF4-246ENST00000570287 MYOM3Q5VTT5 1437 aa11.23□□□□□ -0.61
TCF4-246ENST00000570287 IRF5Q13568 498 aa11.23□□□□□ -0.61
TCF4-246ENST00000570287 UGGT2Q9NYU1 1516 aa11.23□□□□□ -0.61
TCF4-246ENST00000570287 BARGINQ6ZT62 677 aa11.22□□□□□ -0.61
TCF4-246ENST00000570287 USP35Q9P2H5 1018 aa11.22□□□□□ -0.61
TCF4-246ENST00000570287 ARHGEF11O15085 1522 aa11.22□□□□□ -0.61
TCF4-246ENST00000570287 RETREG2Q8NC44 543 aa11.22□□□□□ -0.61
TCF4-246ENST00000570287 ZNF777Q9ULD5 760 aaPredicted RBP11.22□□□□□ -0.61
TCF4-246ENST00000570287 ZNF608Q9ULD9 1512 aaPredicted RBP11.22□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 47.7 ms