RNA–Protein interactions for RNA: ENST00000566816.1

CLN3-224, Transcript of CLN3, battenin, humanhuman

TSL 4

Gene CLN3, Length 570 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-224ENST00000566816 RSPH4AQ5TD94 716 aa17.12■□□□□ 0.33
CLN3-224ENST00000566816 KIAA1107Q9UPP5 1409 aa17.12■□□□□ 0.33
CLN3-224ENST00000566816 PPRC1Q5VV67 1664 aaKnown RBP17.1■□□□□ 0.33
CLN3-224ENST00000566816 PLEKHH2Q8IVE3 1493 aa17.1■□□□□ 0.33
CLN3-224ENST00000566816 ARHGAP5Q13017 1502 aa17.1■□□□□ 0.33
CLN3-224ENST00000566816 MYO5CQ9NQX4 1742 aa17.1■□□□□ 0.33
CLN3-224ENST00000566816 CFAP74Q9C0B2 1584 aa17.09■□□□□ 0.33
CLN3-224ENST00000566816 PREX2Q70Z35 1606 aa17.09■□□□□ 0.33
CLN3-224ENST00000566816 CDC42BPAQ5VT25 1732 aa17.07■□□□□ 0.32
CLN3-224ENST00000566816 CDC42BPBQ9Y5S2 1711 aa17.06■□□□□ 0.32
CLN3-224ENST00000566816 ITSN2Q9NZM3 1697 aa17.06■□□□□ 0.32
CLN3-224ENST00000566816 FGD6Q6ZV73 1430 aa17.05■□□□□ 0.32
CLN3-224ENST00000566816 SCAPERQ9BY12 1400 aa17.05■□□□□ 0.32
CLN3-224ENST00000566816 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP17.05■□□□□ 0.32
CLN3-224ENST00000566816 PPARGC1BQ86YN6 1023 aaKnown RBP17.05■□□□□ 0.32
CLN3-224ENST00000566816 ZNF777Q9ULD5 760 aaPredicted RBP17.05■□□□□ 0.32
CLN3-224ENST00000566816 ADGRL1O94910 1474 aa17.05■□□□□ 0.32
CLN3-224ENST00000566816 TSPOAP1O95153 1857 aa17.04■□□□□ 0.32
CLN3-224ENST00000566816 DENND4BO75064 1496 aaPredicted RBP17.04■□□□□ 0.32
CLN3-224ENST00000566816 ZNF644Q9H582 1327 aaPredicted RBP17.03■□□□□ 0.32
CLN3-224ENST00000566816 COL17A1Q9UMD9 1497 aaPredicted RBP17.03■□□□□ 0.32
CLN3-224ENST00000566816 TCOF1Q13428 1488 aaKnown RBP17.02■□□□□ 0.32
CLN3-224ENST00000566816 MBD5Q9P267 1494 aa17.01■□□□□ 0.31
CLN3-224ENST00000566816 HNRNPMP52272 730 aaKnown RBP eCLIP17■□□□□ 0.31
CLN3-224ENST00000566816 SAMD9LQ8IVG5 1584 aa16.99■□□□□ 0.31
CLN3-224ENST00000566816 RRBP1Q9P2E9 1410 aaKnown RBP16.99■□□□□ 0.31
CLN3-224ENST00000566816 RAPGEF3O95398 923 aa16.99■□□□□ 0.31
CLN3-224ENST00000566816 ABCC1P33527 1531 aa16.99■□□□□ 0.31
CLN3-224ENST00000566816 ARHGEF12Q9NZN5 1544 aa16.99■□□□□ 0.31
CLN3-224ENST00000566816 ZNF518AQ6AHZ1 1483 aa16.99■□□□□ 0.31
CLN3-224ENST00000566816 POGZQ7Z3K3 1410 aa16.98■□□□□ 0.31
CLN3-224ENST00000566816 AFAP1Q8N556 730 aa16.98■□□□□ 0.31
CLN3-224ENST00000566816 CAMSAP2Q08AD1 1489 aa16.98■□□□□ 0.31
CLN3-224ENST00000566816 MAGI2Q86UL8 1455 aa16.97■□□□□ 0.31
CLN3-224ENST00000566816 TRAPPC8Q9Y2L5 1435 aa16.96■□□□□ 0.31
CLN3-224ENST00000566816 TSPY4P0CV99 314 aa16.96■□□□□ 0.31
CLN3-224ENST00000566816 TSPY10P0CW01 314 aa16.96■□□□□ 0.31
CLN3-224ENST00000566816 KDM6BO15054 1643 aa16.96■□□□□ 0.3
CLN3-224ENST00000566816 RTEL1-TNFRSF6BF6WH68 1400 aa16.95■□□□□ 0.3
CLN3-224ENST00000566816 ARHGEF5Q12774 1597 aa16.94■□□□□ 0.3
CLN3-224ENST00000566816 MLH3Q9UHC1 1453 aa16.94■□□□□ 0.3
CLN3-224ENST00000566816 PTPN23Q9H3S7 1636 aa16.94■□□□□ 0.3
CLN3-224ENST00000566816 FAM50AQ14320 339 aaKnown RBP16.93■□□□□ 0.3
CLN3-224ENST00000566816 SPAG9O60271 1321 aaKnown RBP16.93■□□□□ 0.3
CLN3-224ENST00000566816 CCDC141Q6ZP82 1450 aa16.93■□□□□ 0.3
CLN3-224ENST00000566816 SYCP2Q9BX26 1530 aa16.92■□□□□ 0.3
CLN3-224ENST00000566816 KDM5CP41229 1560 aa16.92■□□□□ 0.3
CLN3-224ENST00000566816 ZMYM4Q5VZL5 1548 aa16.91■□□□□ 0.3
CLN3-224ENST00000566816 ABCC5O15440 1437 aa16.9■□□□□ 0.3
CLN3-224ENST00000566816 RICTORQ6R327 1708 aa16.9■□□□□ 0.3
CLN3-224ENST00000566816 FRMPD1Q5SYB0 1578 aa16.88■□□□□ 0.29
CLN3-224ENST00000566816 DAPK1P53355 1430 aa16.87■□□□□ 0.29
CLN3-224ENST00000566816 SHANK2Q9UPX8 1470 aa16.87■□□□□ 0.29
CLN3-224ENST00000566816 C9orf84Q5VXU9 1444 aa16.84■□□□□ 0.29
CLN3-224ENST00000566816 MAST1Q9Y2H9 1570 aa16.84■□□□□ 0.29
CLN3-224ENST00000566816 DNMT1P26358 1616 aaKnown RBP16.84■□□□□ 0.29
CLN3-224ENST00000566816 ATP10AO60312 1499 aa16.83■□□□□ 0.28
CLN3-224ENST00000566816 ROCK1Q13464 1354 aa16.83■□□□□ 0.28
CLN3-224ENST00000566816 MYT1LQ9UL68 1186 aa16.83■□□□□ 0.28
CLN3-224ENST00000566816 HECW2Q9P2P5 1572 aa16.82■□□□□ 0.28
CLN3-224ENST00000566816 ANKRD30AQ9BXX3 1397 aa16.82■□□□□ 0.28
CLN3-224ENST00000566816 ZFYVE16Q7Z3T8 1539 aa16.81■□□□□ 0.28
CLN3-224ENST00000566816 NCOA1Q15788 1441 aa16.81■□□□□ 0.28
CLN3-224ENST00000566816 YEATS2Q9ULM3 1422 aa16.81■□□□□ 0.28
CLN3-224ENST00000566816 ATP7AQ04656 1500 aa16.8■□□□□ 0.28
CLN3-224ENST00000566816 ADGRL2O95490 1459 aa16.8■□□□□ 0.28
CLN3-224ENST00000566816 PTPRKQ15262 1439 aa16.8■□□□□ 0.28
CLN3-224ENST00000566816 DHX29Q7Z478 1369 aaKnown RBP16.8■□□□□ 0.28
CLN3-224ENST00000566816 INO80Q9ULG1 1556 aaPredicted RBP16.8■□□□□ 0.28
CLN3-224ENST00000566816 KIDINS220Q9ULH0 1771 aa16.79■□□□□ 0.28
CLN3-224ENST00000566816 REREQ9P2R6 1566 aa16.78■□□□□ 0.28
CLN3-224ENST00000566816 ARHGEF40Q8TER5 1519 aa16.77■□□□□ 0.28
CLN3-224ENST00000566816 CHIC2Q9UKJ5 165 aa16.77■□□□□ 0.28
CLN3-224ENST00000566816 TRIM26Q12899 539 aaPredicted RBP16.76■□□□□ 0.27
CLN3-224ENST00000566816 A2MP01023 1474 aa16.75■□□□□ 0.27
CLN3-224ENST00000566816 ITGAEP38570 1179 aa16.75■□□□□ 0.27
CLN3-224ENST00000566816 RRP7BPQ9NSQ0 103 aa16.75■□□□□ 0.27
CLN3-224ENST00000566816 PPP6R1Q9UPN7 881 aa16.75■□□□□ 0.27
CLN3-224ENST00000566816 KIF15Q9NS87 1388 aa16.75■□□□□ 0.27
CLN3-224ENST00000566816 AGLP35573 1532 aa16.75■□□□□ 0.27
CLN3-224ENST00000566816 PLXNC1O60486 1568 aa16.74■□□□□ 0.27
CLN3-224ENST00000566816 DIP2CQ9Y2E4 1556 aa16.74■□□□□ 0.27
CLN3-224ENST00000566816 ACIN1Q9UKV3 1341 aaKnown RBP16.73■□□□□ 0.27
CLN3-224ENST00000566816 CROCC2H7BZ55 1655 aa16.73■□□□□ 0.27
CLN3-224ENST00000566816 DUOX2Q9NRD8 1548 aa16.73■□□□□ 0.27
CLN3-224ENST00000566816 ABCA6Q8N139 1617 aa16.71■□□□□ 0.27
CLN3-224ENST00000566816 ERBINQ96RT1 1412 aa16.7■□□□□ 0.26
CLN3-224ENST00000566816 HFM1A2PYH4 1435 aa16.7■□□□□ 0.26
CLN3-224ENST00000566816 ADGBQ8N7X0 1667 aa16.69■□□□□ 0.26
CLN3-224ENST00000566816 HRCP23327 699 aa16.69■□□□□ 0.26
CLN3-224ENST00000566816 ANKRD50Q9ULJ7 1429 aa16.69■□□□□ 0.26
CLN3-224ENST00000566816 ARID4BQ4LE39 1312 aaPredicted RBP16.68■□□□□ 0.26
CLN3-224ENST00000566816 KIF3BO15066 747 aa16.67■□□□□ 0.26
CLN3-224ENST00000566816 NAIPQ13075 1403 aa16.67■□□□□ 0.26
CLN3-224ENST00000566816 BCORL1Q5H9F3 1711 aa16.63■□□□□ 0.25
CLN3-224ENST00000566816 EIF2AK4Q9P2K8 1649 aaKnown RBP16.62■□□□□ 0.25
CLN3-224ENST00000566816 SETD5Q9C0A6 1442 aa16.62■□□□□ 0.25
CLN3-224ENST00000566816 GGT6Q6P531 493 aa16.61■□□□□ 0.25
CLN3-224ENST00000566816 FAM135AQ9P2D6 1515 aa16.6■□□□□ 0.25
CLN3-224ENST00000566816 CNTLNQ9NXG0 1405 aa16.58■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms