RNA–Protein interactions for RNA: ENST00000565354.5

CLN3-217, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 759 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-217ENST00000565354 PLPPR3Q6T4P5 718 aa27.72■■■□□ 2.03
CLN3-217ENST00000565354 FER1L4A9Z1Z3 1794 aa27.71■■■□□ 2.03
CLN3-217ENST00000565354 CLIP1P30622 1438 aa27.71■■■□□ 2.03
CLN3-217ENST00000565354 HECW1Q76N89 1606 aa27.7■■■□□ 2.03
CLN3-217ENST00000565354 FMN1Q68DA7 1419 aa27.67■■■□□ 2.02
CLN3-217ENST00000565354 CDK13Q14004 1512 aaKnown RBP27.66■■■□□ 2.02
CLN3-217ENST00000565354 MLECQ14165 292 aa27.65■■■□□ 2.02
CLN3-217ENST00000565354 SCAPERQ9BY12 1400 aa27.65■■■□□ 2.02
CLN3-217ENST00000565354 PLCH2O75038 1416 aa27.64■■■□□ 2.02
CLN3-217ENST00000565354 CEP162Q5TB80 1403 aa27.63■■■□□ 2.01
CLN3-217ENST00000565354 CERKQ8TCT0 537 aa27.62■■■□□ 2.01
CLN3-217ENST00000565354 ATP10AO60312 1499 aa27.59■■■□□ 2.01
CLN3-217ENST00000565354 ARHGEF12Q9NZN5 1544 aa27.59■■■□□ 2.01
CLN3-217ENST00000565354 ATP1B4Q9UN42 357 aaPredicted RBP27.59■■■□□ 2.01
CLN3-217ENST00000565354 MYO5CQ9NQX4 1742 aa27.58■■■□□ 2.01
CLN3-217ENST00000565354 PREX1Q8TCU6 1659 aa27.57■■■□□ 2
CLN3-217ENST00000565354 C9orf84Q5VXU9 1444 aa27.56■■■□□ 2
CLN3-217ENST00000565354 EFCAB2Q5VUJ9 269 aa27.52■■■□□ 2
CLN3-217ENST00000565354 ZNF518AQ6AHZ1 1483 aa27.47■■□□□ 1.99
CLN3-217ENST00000565354 CEBPAP49715 358 aaPredicted RBP27.47■■□□□ 1.99
CLN3-217ENST00000565354 SETD1BQ9UPS6 1966 aaKnown RBP27.47■■□□□ 1.99
CLN3-217ENST00000565354 KIF14Q15058 1648 aa27.46■■□□□ 1.99
CLN3-217ENST00000565354 STRCQ7RTU9 1775 aa27.46■■□□□ 1.99
CLN3-217ENST00000565354 CDK11AQ9UQ88 783 aaPredicted RBP27.45■■□□□ 1.98
CLN3-217ENST00000565354 KDM5CP41229 1560 aa27.44■■□□□ 1.98
CLN3-217ENST00000565354 CASKIN1Q8WXD9 1431 aa27.43■■□□□ 1.98
CLN3-217ENST00000565354 DMRT2Q9Y5R5 561 aa27.42■■□□□ 1.98
CLN3-217ENST00000565354 ARHGAP5Q13017 1502 aa27.41■■□□□ 1.98
CLN3-217ENST00000565354 UHRF1BP1Q6BDS2 1440 aa27.4■■□□□ 1.98
CLN3-217ENST00000565354 FYCO1Q9BQS8 1478 aa27.39■■□□□ 1.98
CLN3-217ENST00000565354 AFAP1Q8N556 730 aa27.39■■□□□ 1.98
CLN3-217ENST00000565354 TROQ12816 1431 aaPredicted RBP27.39■■□□□ 1.97
CLN3-217ENST00000565354 DIP2CQ9Y2E4 1556 aa27.38■■□□□ 1.97
CLN3-217ENST00000565354 REREQ9P2R6 1566 aa27.37■■□□□ 1.97
CLN3-217ENST00000565354 CCDC18Q5T9S5 1454 aa27.34■■□□□ 1.97
CLN3-217ENST00000565354 MYT1LQ9UL68 1186 aa27.34■■□□□ 1.97
CLN3-217ENST00000565354 LRRIQ1Q96JM4 1722 aa27.33■■□□□ 1.97
CLN3-217ENST00000565354 CDC42BPBQ9Y5S2 1711 aa27.33■■□□□ 1.97
CLN3-217ENST00000565354 ABCA6Q8N139 1617 aa27.33■■□□□ 1.97
CLN3-217ENST00000565354 C3P01024 1663 aa27.33■■□□□ 1.97
CLN3-217ENST00000565354 MLH3Q9UHC1 1453 aa27.31■■□□□ 1.96
CLN3-217ENST00000565354 DISP3Q9P2K9 1392 aa27.3■■□□□ 1.96
CLN3-217ENST00000565354 PTPRTO14522 1441 aa27.28■■□□□ 1.96
CLN3-217ENST00000565354 VPS8Q8N3P4 1428 aa27.28■■□□□ 1.96
CLN3-217ENST00000565354 AGLP35573 1532 aa27.27■■□□□ 1.96
CLN3-217ENST00000565354 PREX2Q70Z35 1606 aa27.26■■□□□ 1.95
CLN3-217ENST00000565354 ILDR2Q71H61 639 aa27.24■■□□□ 1.95
CLN3-217ENST00000565354 ABCC1P33527 1531 aa27.24■■□□□ 1.95
CLN3-217ENST00000565354 ITSN2Q9NZM3 1697 aa27.24■■□□□ 1.95
CLN3-217ENST00000565354 ESF1Q9H501 851 aaKnown RBP27.23■■□□□ 1.95
CLN3-217ENST00000565354 TRAPPC8Q9Y2L5 1435 aa27.23■■□□□ 1.95
CLN3-217ENST00000565354 KIDINS220Q9ULH0 1771 aa27.2■■□□□ 1.94
CLN3-217ENST00000565354 LTBP4Q8N2S1 1624 aa27.18■■□□□ 1.94
CLN3-217ENST00000565354 CNTLNQ9NXG0 1405 aa27.17■■□□□ 1.94
CLN3-217ENST00000565354 SOCS7O14512 581 aa27.17■■□□□ 1.94
CLN3-217ENST00000565354 CDC42BPAQ5VT25 1732 aa27.16■■□□□ 1.94
CLN3-217ENST00000565354 NCOA1Q15788 1441 aa27.15■■□□□ 1.94
CLN3-217ENST00000565354 SPATA31D1Q6ZQQ2 1576 aa27.14■■□□□ 1.93
CLN3-217ENST00000565354 IQSEC2Q5JU85 1478 aa27.13■■□□□ 1.93
CLN3-217ENST00000565354 MROH2AA6NES4 1674 aa27.11■■□□□ 1.93
CLN3-217ENST00000565354 MTUS2Q5JR59 1369 aa27.11■■□□□ 1.93
CLN3-217ENST00000565354 APLP2Q06481 763 aa27.1■■□□□ 1.93
CLN3-217ENST00000565354 SAMD9LQ8IVG5 1584 aa27.09■■□□□ 1.93
CLN3-217ENST00000565354 NPATQ14207 1427 aa27.08■■□□□ 1.93
CLN3-217ENST00000565354 CAMSAP1Q5T5Y3 1602 aa27.07■■□□□ 1.92
CLN3-217ENST00000565354 TIAM1Q13009 1591 aa27.06■■□□□ 1.92
CLN3-217ENST00000565354 EHBP1L1Q8N3D4 1523 aa27.04■■□□□ 1.92
CLN3-217ENST00000565354 SUPT6HQ7KZ85 1726 aaKnown RBP27.03■■□□□ 1.92
CLN3-217ENST00000565354 ZMYM3Q14202 1370 aa27.02■■□□□ 1.92
CLN3-217ENST00000565354 SYCP2Q9BX26 1530 aa27.01■■□□□ 1.91
CLN3-217ENST00000565354 SPAG9O60271 1321 aaKnown RBP27■■□□□ 1.91
CLN3-217ENST00000565354 ZNF777Q9ULD5 760 aaPredicted RBP27■■□□□ 1.91
CLN3-217ENST00000565354 CLTCQ00610 1675 aaKnown RBP26.98■■□□□ 1.91
CLN3-217ENST00000565354 MAP3K1Q13233 1512 aa26.98■■□□□ 1.91
CLN3-217ENST00000565354 ZNF142P52746 1687 aaPredicted RBP26.98■■□□□ 1.91
CLN3-217ENST00000565354 GPATCH8Q9UKJ3 1502 aaKnown RBP26.97■■□□□ 1.91
CLN3-217ENST00000565354 ATP7AQ04656 1500 aa26.96■■□□□ 1.91
CLN3-217ENST00000565354 NCKAP5LQ9HCH0 1330 aa26.96■■□□□ 1.91
CLN3-217ENST00000565354 MYO3AQ8NEV4 1616 aa26.95■■□□□ 1.91
CLN3-217ENST00000565354 HNRNPMP52272 730 aaKnown RBP eCLIP26.95■■□□□ 1.9
CLN3-217ENST00000565354 PLXNC1O60486 1568 aa26.95■■□□□ 1.9
CLN3-217ENST00000565354 INO80Q9ULG1 1556 aaPredicted RBP26.94■■□□□ 1.9
CLN3-217ENST00000565354 LRRC9Q6ZRR7 1453 aa26.93■■□□□ 1.9
CLN3-217ENST00000565354 PLA2R1Q13018 1463 aa26.93■■□□□ 1.9
CLN3-217ENST00000565354 ZNF335Q9H4Z2 1342 aaPredicted RBP26.92■■□□□ 1.9
CLN3-217ENST00000565354 CEP170BQ9Y4F5 1589 aaPredicted RBP26.92■■□□□ 1.9
CLN3-217ENST00000565354 KIAA1107Q9UPP5 1409 aa26.91■■□□□ 1.9
CLN3-217ENST00000565354 CCNB3Q8WWL7 1395 aa26.91■■□□□ 1.9
CLN3-217ENST00000565354 A2MP01023 1474 aa26.91■■□□□ 1.9
CLN3-217ENST00000565354 PLEKHH2Q8IVE3 1493 aa26.91■■□□□ 1.9
CLN3-217ENST00000565354 PKD2Q13563 968 aa26.9■■□□□ 1.9
CLN3-217ENST00000565354 PTPRKQ15262 1439 aa26.9■■□□□ 1.9
CLN3-217ENST00000565354 TCOF1Q13428 1488 aaKnown RBP26.88■■□□□ 1.89
CLN3-217ENST00000565354 UBAP1LF5GYI3 381 aa26.88■■□□□ 1.89
CLN3-217ENST00000565354 KANK4Q5T7N3 995 aaPredicted RBP26.87■■□□□ 1.89
CLN3-217ENST00000565354 CFDP1Q9UEE9 299 aaPredicted RBP26.86■■□□□ 1.89
CLN3-217ENST00000565354 NCOA2Q15596 1464 aa26.85■■□□□ 1.89
CLN3-217ENST00000565354 ADGBQ8N7X0 1667 aa26.85■■□□□ 1.89
CLN3-217ENST00000565354 GGT6Q6P531 493 aa26.84■■□□□ 1.89
CLN3-217ENST00000565354 PPP6R1Q9UPN7 881 aa26.82■■□□□ 1.88
Retrieved 100 of 20,778 RNA–protein pairs in 57.7 ms