RNA–Protein interactions for RNA: ENST00000563790.5

HDGFL3-204, Transcript of HDGF like 3, humanhuman

TSL 3

Gene HDGFL3, Length 934 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDGFL3-204ENST00000563790 TOM1O60784 492 aa20.12■□□□□ 0.81
HDGFL3-204ENST00000563790 UGGT2Q9NYU1 1516 aa20.12■□□□□ 0.81
HDGFL3-204ENST00000563790 ABCA8O94911 1581 aa20.11■□□□□ 0.81
HDGFL3-204ENST00000563790 IGF1RP08069 1367 aa20.1■□□□□ 0.81
HDGFL3-204ENST00000563790 DENND4BO75064 1496 aaPredicted RBP20.09■□□□□ 0.81
HDGFL3-204ENST00000563790 CAMSAP1Q5T5Y3 1602 aa20.09■□□□□ 0.81
HDGFL3-204ENST00000563790 POTEAQ6S8J7 498 aa20.06■□□□□ 0.8
HDGFL3-204ENST00000563790 MAGI2Q86UL8 1455 aa20.05■□□□□ 0.8
HDGFL3-204ENST00000563790 ALKQ9UM73 1620 aa20.05■□□□□ 0.8
HDGFL3-204ENST00000563790 SUPT6HQ7KZ85 1726 aaKnown RBP20■□□□□ 0.79
HDGFL3-204ENST00000563790 UPF1Q92900 1129 aaKnown RBP eCLIP19.98■□□□□ 0.79
HDGFL3-204ENST00000563790 CFAP74Q9C0B2 1584 aa19.98■□□□□ 0.79
HDGFL3-204ENST00000563790 HECW1Q76N89 1606 aa19.97■□□□□ 0.79
HDGFL3-204ENST00000563790 TRAPPC8Q9Y2L5 1435 aa19.95■□□□□ 0.78
HDGFL3-204ENST00000563790 CPS1P31327 1500 aa19.95■□□□□ 0.78
HDGFL3-204ENST00000563790 PTPRKQ15262 1439 aa19.93■□□□□ 0.78
HDGFL3-204ENST00000563790 NCKAP5LQ9HCH0 1330 aa19.93■□□□□ 0.78
HDGFL3-204ENST00000563790 CARMIL1Q5VZK9 1371 aa19.91■□□□□ 0.78
HDGFL3-204ENST00000563790 C9orf84Q5VXU9 1444 aa19.91■□□□□ 0.78
HDGFL3-204ENST00000563790 ATP10AO60312 1499 aa19.91■□□□□ 0.78
HDGFL3-204ENST00000563790 PLA2R1Q13018 1463 aa19.89■□□□□ 0.77
HDGFL3-204ENST00000563790 ZNF142P52746 1687 aaPredicted RBP19.87■□□□□ 0.77
HDGFL3-204ENST00000563790 TCOF1Q13428 1488 aaKnown RBP19.87■□□□□ 0.77
HDGFL3-204ENST00000563790 KIF27Q86VH2 1401 aa19.87■□□□□ 0.77
HDGFL3-204ENST00000563790 PKD2Q13563 968 aa19.86■□□□□ 0.77
HDGFL3-204ENST00000563790 ATP10BO94823 1461 aa19.86■□□□□ 0.77
HDGFL3-204ENST00000563790 RAPGEF2Q9Y4G8 1499 aa19.82■□□□□ 0.76
HDGFL3-204ENST00000563790 IFFO2Q5TF58 517 aa19.8■□□□□ 0.76
HDGFL3-204ENST00000563790 PPP6R1Q9UPN7 881 aa19.8■□□□□ 0.76
HDGFL3-204ENST00000563790 SHANK2Q9UPX8 1470 aa19.79■□□□□ 0.76
HDGFL3-204ENST00000563790 POLR1AO95602 1720 aaPredicted RBP19.76■□□□□ 0.75
HDGFL3-204ENST00000563790 NPATQ14207 1427 aa19.75■□□□□ 0.75
HDGFL3-204ENST00000563790 MYO3AQ8NEV4 1616 aa19.73■□□□□ 0.75
HDGFL3-204ENST00000563790 MROH2AA6NES4 1674 aa19.73■□□□□ 0.75
HDGFL3-204ENST00000563790 GOLGA3Q08378 1498 aa19.73■□□□□ 0.75
HDGFL3-204ENST00000563790 RNF17Q9BXT8 1623 aaKnown RBP19.73■□□□□ 0.75
HDGFL3-204ENST00000563790 CTTNBP2Q8WZ74 1663 aa19.71■□□□□ 0.75
HDGFL3-204ENST00000563790 REREQ9P2R6 1566 aa19.7■□□□□ 0.74
HDGFL3-204ENST00000563790 ARID3CA6NKF2 412 aa19.7■□□□□ 0.74
HDGFL3-204ENST00000563790 AGLP35573 1532 aa19.7■□□□□ 0.74
HDGFL3-204ENST00000563790 CEP170BQ9Y4F5 1589 aaPredicted RBP19.7■□□□□ 0.74
HDGFL3-204ENST00000563790 VWDEQ8N2E2 1590 aa19.67■□□□□ 0.74
HDGFL3-204ENST00000563790 POTEDQ86YR6 584 aa19.66■□□□□ 0.74
HDGFL3-204ENST00000563790 CNTLNQ9NXG0 1405 aa19.65■□□□□ 0.74
HDGFL3-204ENST00000563790 NEURL4Q96JN8 1562 aa19.63■□□□□ 0.73
HDGFL3-204ENST00000563790 LRRC7Q96NW7 1537 aa19.63■□□□□ 0.73
HDGFL3-204ENST00000563790 ESF1Q9H501 851 aaKnown RBP19.63■□□□□ 0.73
HDGFL3-204ENST00000563790 STRCP1A6NGW2 1772 aa19.62■□□□□ 0.73
HDGFL3-204ENST00000563790 SCAPERQ9BY12 1400 aa19.61■□□□□ 0.73
HDGFL3-204ENST00000563790 DIP2CQ9Y2E4 1556 aa19.61■□□□□ 0.73
HDGFL3-204ENST00000563790 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP19.61■□□□□ 0.73
HDGFL3-204ENST00000563790 SETBP1Q9Y6X0 1596 aa19.58■□□□□ 0.73
HDGFL3-204ENST00000563790 SYNMO15061 1565 aa19.57■□□□□ 0.72
HDGFL3-204ENST00000563790 KDM5CP41229 1560 aa19.54■□□□□ 0.72
HDGFL3-204ENST00000563790 DNMT1P26358 1616 aaKnown RBP19.54■□□□□ 0.72
HDGFL3-204ENST00000563790 ABCA6Q8N139 1617 aa19.54■□□□□ 0.72
HDGFL3-204ENST00000563790 TRIM52Q96A61 297 aa19.53■□□□□ 0.72
HDGFL3-204ENST00000563790 RAPGEF6Q8TEU7 1601 aa19.53■□□□□ 0.72
HDGFL3-204ENST00000563790 XIRP1Q702N8 1843 aaKnown RBP19.51■□□□□ 0.71
HDGFL3-204ENST00000563790 CDK12Q9NYV4 1490 aaPredicted RBP19.49■□□□□ 0.71
HDGFL3-204ENST00000563790 EP400Q96L91 3159 aa19.48■□□□□ 0.71
HDGFL3-204ENST00000563790 ZNF518AQ6AHZ1 1483 aa19.48■□□□□ 0.71
HDGFL3-204ENST00000563790 ZRANB1Q9UGI0 708 aa19.48■□□□□ 0.71
HDGFL3-204ENST00000563790 ZMYM3Q14202 1370 aa19.47■□□□□ 0.71
HDGFL3-204ENST00000563790 RBM33Q96EV2 1170 aaKnown RBP19.47■□□□□ 0.71
HDGFL3-204ENST00000563790 FAM9AQ8IZU1 332 aaPredicted RBP19.45■□□□□ 0.7
HDGFL3-204ENST00000563790 FAM135BQ49AJ0 1406 aa19.44■□□□□ 0.7
HDGFL3-204ENST00000563790 CLTCQ00610 1675 aaKnown RBP19.44■□□□□ 0.7
HDGFL3-204ENST00000563790 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP19.44■□□□□ 0.7
HDGFL3-204ENST00000563790 HNRNPUL2Q1KMD3 747 aaKnown RBP19.44■□□□□ 0.7
HDGFL3-204ENST00000563790 LRP5O75197 1615 aa19.43■□□□□ 0.7
HDGFL3-204ENST00000563790 A2ML1A8K2U0 1454 aa19.43■□□□□ 0.7
HDGFL3-204ENST00000563790 FOXD1Q16676 465 aa19.43■□□□□ 0.7
HDGFL3-204ENST00000563790 PLCH2O75038 1416 aa19.41■□□□□ 0.7
HDGFL3-204ENST00000563790 CDK13Q14004 1512 aaKnown RBP19.41■□□□□ 0.7
HDGFL3-204ENST00000563790 MYO5CQ9NQX4 1742 aa19.4■□□□□ 0.7
HDGFL3-204ENST00000563790 ROBO1Q9Y6N7 1651 aa19.4■□□□□ 0.7
HDGFL3-204ENST00000563790 ZNF772Q68DY9 489 aaPredicted RBP19.39■□□□□ 0.69
HDGFL3-204ENST00000563790 NUP153P49790 1475 aaKnown RBP19.39■□□□□ 0.69
HDGFL3-204ENST00000563790 DEPDC5O75140 1603 aa19.39■□□□□ 0.69
HDGFL3-204ENST00000563790 IQGAP1P46940 1657 aa19.39■□□□□ 0.69
HDGFL3-204ENST00000563790 MED14O60244 1454 aa19.36■□□□□ 0.69
HDGFL3-204ENST00000563790 PLEKHD1A6NEE1 506 aa19.36■□□□□ 0.69
HDGFL3-204ENST00000563790 MLH3Q9UHC1 1453 aa19.35■□□□□ 0.69
HDGFL3-204ENST00000563790 RXRBP28702 533 aa19.35■□□□□ 0.69
HDGFL3-204ENST00000563790 PHLPP1O60346 1717 aa19.33■□□□□ 0.68
HDGFL3-204ENST00000563790 ITSN2Q9NZM3 1697 aa19.31■□□□□ 0.68
HDGFL3-204ENST00000563790 AFAP1Q8N556 730 aa19.31■□□□□ 0.68
HDGFL3-204ENST00000563790 KIDINS220Q9ULH0 1771 aa19.31■□□□□ 0.68
HDGFL3-204ENST00000563790 NPHP4O75161 1426 aaPredicted RBP19.3■□□□□ 0.68
HDGFL3-204ENST00000563790 JCADQ9P266 1359 aa19.29■□□□□ 0.68
HDGFL3-204ENST00000563790 LRP6O75581 1613 aa19.29■□□□□ 0.68
HDGFL3-204ENST00000563790 MYT1LQ9UL68 1186 aa19.28■□□□□ 0.68
HDGFL3-204ENST00000563790 EFCAB2Q5VUJ9 269 aa19.26■□□□□ 0.67
HDGFL3-204ENST00000563790 ANKLE2Q86XL3 938 aa19.26■□□□□ 0.67
HDGFL3-204ENST00000563790 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP19.26■□□□□ 0.67
HDGFL3-204ENST00000563790 CEP350Q5VT06 3117 aa19.26■□□□□ 0.67
HDGFL3-204ENST00000563790 ZC3H13Q5T200 1668 aaKnown RBP19.24■□□□□ 0.67
HDGFL3-204ENST00000563790 ABCC1P33527 1531 aa19.23■□□□□ 0.67
HDGFL3-204ENST00000563790 SAMD9Q5K651 1589 aa19.23■□□□□ 0.67
Retrieved 100 of 20,778 RNA–protein pairs in 158.1 ms