RNA–Protein interactions for RNA: ENST00000563739.5

SF3B3-204, Transcript of splicing factor 3b subunit 3, humanhuman

TSL 2

Gene SF3B3, Length 1,105 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-204ENST00000563739 LRRIQ1Q96JM4 1722 aa17.79■□□□□ 0.44
SF3B3-204ENST00000563739 MYO5CQ9NQX4 1742 aa17.79■□□□□ 0.44
SF3B3-204ENST00000563739 PLCH2O75038 1416 aa17.78■□□□□ 0.44
SF3B3-204ENST00000563739 KDM5CP41229 1560 aa17.78■□□□□ 0.44
SF3B3-204ENST00000563739 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.77■□□□□ 0.44
SF3B3-204ENST00000563739 HNRNPUL2Q1KMD3 747 aaKnown RBP17.77■□□□□ 0.44
SF3B3-204ENST00000563739 SCAPERQ9BY12 1400 aa17.76■□□□□ 0.43
SF3B3-204ENST00000563739 CERKQ8TCT0 537 aa17.76■□□□□ 0.43
SF3B3-204ENST00000563739 DIP2CQ9Y2E4 1556 aa17.75■□□□□ 0.43
SF3B3-204ENST00000563739 C9orf84Q5VXU9 1444 aa17.75■□□□□ 0.43
SF3B3-204ENST00000563739 ABCA6Q8N139 1617 aa17.74■□□□□ 0.43
SF3B3-204ENST00000563739 ATP10AO60312 1499 aa17.74■□□□□ 0.43
SF3B3-204ENST00000563739 EEA1Q15075 1411 aa17.73■□□□□ 0.43
SF3B3-204ENST00000563739 PLEKHD1A6NEE1 506 aa17.73■□□□□ 0.43
SF3B3-204ENST00000563739 REREQ9P2R6 1566 aa17.72■□□□□ 0.43
SF3B3-204ENST00000563739 PLPPR3Q6T4P5 718 aa17.72■□□□□ 0.43
SF3B3-204ENST00000563739 C3P01024 1663 aa17.71■□□□□ 0.43
SF3B3-204ENST00000563739 RANGAP1P46060 587 aaPredicted RBP17.71■□□□□ 0.43
SF3B3-204ENST00000563739 MLECQ14165 292 aa17.7■□□□□ 0.42
SF3B3-204ENST00000563739 CDC42BPBQ9Y5S2 1711 aa17.69■□□□□ 0.42
SF3B3-204ENST00000563739 SPATA31D1Q6ZQQ2 1576 aa17.68■□□□□ 0.42
SF3B3-204ENST00000563739 CEBPAP49715 358 aaPredicted RBP17.67■□□□□ 0.42
SF3B3-204ENST00000563739 LTBP4Q8N2S1 1624 aa17.67■□□□□ 0.42
SF3B3-204ENST00000563739 ARHGAP35Q9NRY4 1499 aa17.67■□□□□ 0.42
SF3B3-204ENST00000563739 FAM9AQ8IZU1 332 aaPredicted RBP17.66■□□□□ 0.42
SF3B3-204ENST00000563739 ZNF518AQ6AHZ1 1483 aa17.65■□□□□ 0.42
SF3B3-204ENST00000563739 ITSN2Q9NZM3 1697 aa17.64■□□□□ 0.42
SF3B3-204ENST00000563739 PREX2Q70Z35 1606 aa17.64■□□□□ 0.41
SF3B3-204ENST00000563739 ABCC1P33527 1531 aa17.63■□□□□ 0.41
SF3B3-204ENST00000563739 SETD1BQ9UPS6 1966 aaKnown RBP17.63■□□□□ 0.41
SF3B3-204ENST00000563739 KIDINS220Q9ULH0 1771 aa17.62■□□□□ 0.41
SF3B3-204ENST00000563739 AGLP35573 1532 aa17.62■□□□□ 0.41
SF3B3-204ENST00000563739 TROQ12816 1431 aaPredicted RBP17.61■□□□□ 0.41
SF3B3-204ENST00000563739 ARHGAP5Q13017 1502 aa17.61■□□□□ 0.41
SF3B3-204ENST00000563739 UHRF1BP1Q6BDS2 1440 aa17.6■□□□□ 0.41
SF3B3-204ENST00000563739 MLH3Q9UHC1 1453 aa17.6■□□□□ 0.41
SF3B3-204ENST00000563739 PTPRTO14522 1441 aa17.59■□□□□ 0.41
SF3B3-204ENST00000563739 TRAPPC8Q9Y2L5 1435 aa17.58■□□□□ 0.41
SF3B3-204ENST00000563739 AFAP1Q8N556 730 aa17.57■□□□□ 0.4
SF3B3-204ENST00000563739 CDC42BPAQ5VT25 1732 aa17.57■□□□□ 0.4
SF3B3-204ENST00000563739 FMN1Q68DA7 1419 aa17.56■□□□□ 0.4
SF3B3-204ENST00000563739 EFCAB2Q5VUJ9 269 aa17.56■□□□□ 0.4
SF3B3-204ENST00000563739 NCOA1Q15788 1441 aa17.55■□□□□ 0.4
SF3B3-204ENST00000563739 MROH2AA6NES4 1674 aa17.54■□□□□ 0.4
SF3B3-204ENST00000563739 IQSEC2Q5JU85 1478 aa17.51■□□□□ 0.39
SF3B3-204ENST00000563739 ZNF142P52746 1687 aaPredicted RBP17.51■□□□□ 0.39
SF3B3-204ENST00000563739 SAMD9LQ8IVG5 1584 aa17.5■□□□□ 0.39
SF3B3-204ENST00000563739 CAMSAP1Q5T5Y3 1602 aa17.49■□□□□ 0.39
SF3B3-204ENST00000563739 PLXNC1O60486 1568 aa17.49■□□□□ 0.39
SF3B3-204ENST00000563739 MYO3AQ8NEV4 1616 aa17.48■□□□□ 0.39
SF3B3-204ENST00000563739 INO80Q9ULG1 1556 aaPredicted RBP17.46■□□□□ 0.39
SF3B3-204ENST00000563739 CLIP1P30622 1438 aa17.46■□□□□ 0.39
SF3B3-204ENST00000563739 DMRT2Q9Y5R5 561 aa17.45■□□□□ 0.38
SF3B3-204ENST00000563739 SYCP2Q9BX26 1530 aa17.45■□□□□ 0.38
SF3B3-204ENST00000563739 CLTCQ00610 1675 aaKnown RBP17.44■□□□□ 0.38
SF3B3-204ENST00000563739 SUPT6HQ7KZ85 1726 aaKnown RBP17.44■□□□□ 0.38
SF3B3-204ENST00000563739 NPATQ14207 1427 aa17.43■□□□□ 0.38
SF3B3-204ENST00000563739 CNTLNQ9NXG0 1405 aa17.43■□□□□ 0.38
SF3B3-204ENST00000563739 CASKIN1Q8WXD9 1431 aa17.42■□□□□ 0.38
SF3B3-204ENST00000563739 TCOF1Q13428 1488 aaKnown RBP17.41■□□□□ 0.38
SF3B3-204ENST00000563739 CCDC18Q5T9S5 1454 aa17.4■□□□□ 0.38
SF3B3-204ENST00000563739 EHMT2Q96KQ7 1210 aa17.4■□□□□ 0.38
SF3B3-204ENST00000563739 ATP1B4Q9UN42 357 aaPredicted RBP17.4■□□□□ 0.38
SF3B3-204ENST00000563739 CEP170BQ9Y4F5 1589 aaPredicted RBP17.4■□□□□ 0.38
SF3B3-204ENST00000563739 ATP7AQ04656 1500 aa17.39■□□□□ 0.37
SF3B3-204ENST00000563739 CDK11AQ9UQ88 783 aaPredicted RBP17.38■□□□□ 0.37
SF3B3-204ENST00000563739 PLA2R1Q13018 1463 aa17.37■□□□□ 0.37
SF3B3-204ENST00000563739 GPATCH8Q9UKJ3 1502 aaKnown RBP17.37■□□□□ 0.37
SF3B3-204ENST00000563739 ZNF335Q9H4Z2 1342 aaPredicted RBP17.37■□□□□ 0.37
SF3B3-204ENST00000563739 PTPRKQ15262 1439 aa17.37■□□□□ 0.37
SF3B3-204ENST00000563739 FYCO1Q9BQS8 1478 aa17.35■□□□□ 0.37
SF3B3-204ENST00000563739 NEURL4Q96JN8 1562 aa17.35■□□□□ 0.37
SF3B3-204ENST00000563739 UBTFP17480 764 aaKnown RBP17.34■□□□□ 0.37
SF3B3-204ENST00000563739 ZMYM3Q14202 1370 aa17.34■□□□□ 0.37
SF3B3-204ENST00000563739 ALKQ9UM73 1620 aa17.33■□□□□ 0.37
SF3B3-204ENST00000563739 NCKAP5LQ9HCH0 1330 aa17.33■□□□□ 0.36
SF3B3-204ENST00000563739 DNMT1P26358 1616 aaKnown RBP17.32■□□□□ 0.36
SF3B3-204ENST00000563739 POLR1AO95602 1720 aaPredicted RBP17.31■□□□□ 0.36
SF3B3-204ENST00000563739 ADGBQ8N7X0 1667 aa17.31■□□□□ 0.36
SF3B3-204ENST00000563739 A2MP01023 1474 aa17.31■□□□□ 0.36
SF3B3-204ENST00000563739 MYT1LQ9UL68 1186 aa17.3■□□□□ 0.36
SF3B3-204ENST00000563739 KIAA1107Q9UPP5 1409 aa17.29■□□□□ 0.36
SF3B3-204ENST00000563739 TIAM1Q13009 1591 aa17.28■□□□□ 0.36
SF3B3-204ENST00000563739 MED1Q15648 1581 aaPredicted RBP17.28■□□□□ 0.36
SF3B3-204ENST00000563739 A2ML1A8K2U0 1454 aa17.25■□□□□ 0.35
SF3B3-204ENST00000563739 MBD5Q9P267 1494 aa17.25■□□□□ 0.35
SF3B3-204ENST00000563739 SPAG9O60271 1321 aaKnown RBP17.25■□□□□ 0.35
SF3B3-204ENST00000563739 HNRNPMP52272 730 aaKnown RBP eCLIP17.25■□□□□ 0.35
SF3B3-204ENST00000563739 VWDEQ8N2E2 1590 aa17.23■□□□□ 0.35
SF3B3-204ENST00000563739 ESF1Q9H501 851 aaKnown RBP17.23■□□□□ 0.35
SF3B3-204ENST00000563739 PLEKHH2Q8IVE3 1493 aa17.22■□□□□ 0.35
SF3B3-204ENST00000563739 STRCP1A6NGW2 1772 aa17.21■□□□□ 0.35
SF3B3-204ENST00000563739 UBAP1LF5GYI3 381 aa17.21■□□□□ 0.35
SF3B3-204ENST00000563739 PKD2Q13563 968 aa17.2■□□□□ 0.34
SF3B3-204ENST00000563739 ZNF777Q9ULD5 760 aaPredicted RBP17.2■□□□□ 0.34
SF3B3-204ENST00000563739 PHF23Q9BUL5 403 aaPredicted RBP17.18■□□□□ 0.34
SF3B3-204ENST00000563739 ZNF644Q9H582 1327 aaPredicted RBP17.18■□□□□ 0.34
SF3B3-204ENST00000563739 CPS1P31327 1500 aa17.17■□□□□ 0.34
SF3B3-204ENST00000563739 PZPP20742 1482 aa17.17■□□□□ 0.34
SF3B3-204ENST00000563739 SHANK2Q9UPX8 1470 aa17.16■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms