RNA–Protein interactions for RNA: ENST00000562258.5

VPS39-205, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 4,160 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-205ENST00000562258 SETD5Q9C0A6 1442 aa12.64□□□□□ -0.39
VPS39-205ENST00000562258 KIAA0586Q9BVV6 1533 aa12.64□□□□□ -0.39
VPS39-205ENST00000562258 RAB3GAP2Q9H2M9 1393 aa12.64□□□□□ -0.39
VPS39-205ENST00000562258 GRIN2AQ12879 1464 aa12.63□□□□□ -0.39
VPS39-205ENST00000562258 TNNT2P45379 298 aaPredicted RBP12.62□□□□□ -0.39
VPS39-205ENST00000562258 SRPK2P78362 688 aaKnown RBP12.6□□□□□ -0.39
VPS39-205ENST00000562258 PLB1Q6P1J6 1458 aa12.6□□□□□ -0.39
VPS39-205ENST00000562258 EID1Q9Y6B2 187 aa12.59□□□□□ -0.39
VPS39-205ENST00000562258 MAGI1Q96QZ7 1491 aaPredicted RBP12.59□□□□□ -0.39
VPS39-205ENST00000562258 UACAQ9BZF9 1416 aa12.58□□□□□ -0.4
VPS39-205ENST00000562258 PHLDB1Q86UU1 1377 aa12.58□□□□□ -0.4
VPS39-205ENST00000562258 KIF21BO75037 1637 aa12.57□□□□□ -0.4
VPS39-205ENST00000562258 SCAPERQ9BY12 1400 aa12.56□□□□□ -0.4
VPS39-205ENST00000562258 ACIN1Q9UKV3 1341 aaKnown RBP12.56□□□□□ -0.4
VPS39-205ENST00000562258 MYT1Q01538 1121 aa12.55□□□□□ -0.4
VPS39-205ENST00000562258 L3MBTL2Q969R5 705 aa12.54□□□□□ -0.4
VPS39-205ENST00000562258 CASKIN1Q8WXD9 1431 aa12.54□□□□□ -0.4
VPS39-205ENST00000562258 PAK3O75914 559 aaPredicted RBP12.53□□□□□ -0.4
VPS39-205ENST00000562258 TRAK1Q9UPV9 953 aa12.53□□□□□ -0.4
VPS39-205ENST00000562258 KIF15Q9NS87 1388 aa12.53□□□□□ -0.4
VPS39-205ENST00000562258 MRS2Q9HD23 443 aa12.52□□□□□ -0.4
VPS39-205ENST00000562258 ARHGAP5Q13017 1502 aa12.52□□□□□ -0.41
VPS39-205ENST00000562258 KIF21AQ7Z4S6 1674 aa12.52□□□□□ -0.41
VPS39-205ENST00000562258 KNSTRNQ9Y448 316 aa12.52□□□□□ -0.41
VPS39-205ENST00000562258 ERICH3Q5RHP9 1530 aa12.52□□□□□ -0.41
VPS39-205ENST00000562258 CDK13Q14004 1512 aaKnown RBP12.51□□□□□ -0.41
VPS39-205ENST00000562258 CANXP27824 592 aaKnown RBP12.51□□□□□ -0.41
VPS39-205ENST00000562258 NCOA2Q15596 1464 aa12.5□□□□□ -0.41
VPS39-205ENST00000562258 IQGAP2Q13576 1575 aa12.5□□□□□ -0.41
VPS39-205ENST00000562258 HNRNPUQ00839 825 aaKnown RBP eCLIP12.5□□□□□ -0.41
VPS39-205ENST00000562258 MYOM3Q5VTT5 1437 aa12.5□□□□□ -0.41
VPS39-205ENST00000562258 CC2D1BQ5T0F9 858 aaKnown RBP12.49□□□□□ -0.41
VPS39-205ENST00000562258 FGD6Q6ZV73 1430 aa12.49□□□□□ -0.41
VPS39-205ENST00000562258 WDR43Q15061 677 aaKnown RBP eCLIP12.49□□□□□ -0.41
VPS39-205ENST00000562258 CD109Q6YHK3 1445 aa12.49□□□□□ -0.41
VPS39-205ENST00000562258 LRRC9Q6ZRR7 1453 aa12.49□□□□□ -0.41
VPS39-205ENST00000562258 CDCA8Q53HL2 280 aa12.48□□□□□ -0.41
VPS39-205ENST00000562258 TROQ12816 1431 aaPredicted RBP12.48□□□□□ -0.41
VPS39-205ENST00000562258 NEUROD2Q15784 382 aa12.47□□□□□ -0.41
VPS39-205ENST00000562258 CLSPNQ9HAW4 1339 aa12.47□□□□□ -0.41
VPS39-205ENST00000562258 CEBPAP49715 358 aaPredicted RBP12.46□□□□□ -0.41
VPS39-205ENST00000562258 TMF1P82094 1093 aa12.45□□□□□ -0.42
VPS39-205ENST00000562258 ARHGEF11O15085 1522 aa12.44□□□□□ -0.42
VPS39-205ENST00000562258 ANKRD50Q9ULJ7 1429 aa12.43□□□□□ -0.42
VPS39-205ENST00000562258 HSPA5P11021 654 aaKnown RBP12.43□□□□□ -0.42
VPS39-205ENST00000562258 MIER1Q8N108 512 aa12.43□□□□□ -0.42
VPS39-205ENST00000562258 ARXQ96QS3 562 aa12.43□□□□□ -0.42
VPS39-205ENST00000562258 VGFO15240 615 aaPredicted RBP12.42□□□□□ -0.42
VPS39-205ENST00000562258 ROCK2O75116 1388 aaKnown RBP12.42□□□□□ -0.42
VPS39-205ENST00000562258 CCDC144AA2RUR9 1427 aa12.42□□□□□ -0.42
VPS39-205ENST00000562258 EPRSP07814 1512 aaKnown RBP12.42□□□□□ -0.42
VPS39-205ENST00000562258 NGDNQ8NEJ9 315 aaKnown RBP12.42□□□□□ -0.42
VPS39-205ENST00000562258 TMEM132EQ6IEE7 984 aa12.41□□□□□ -0.42
VPS39-205ENST00000562258 U2SURPO15042 1029 aaKnown RBP12.41□□□□□ -0.42
VPS39-205ENST00000562258 FYCO1Q9BQS8 1478 aa12.41□□□□□ -0.42
VPS39-205ENST00000562258 TXNDC2Q86VQ3 553 aa12.4□□□□□ -0.42
VPS39-205ENST00000562258 MINK1Q8N4C8 1332 aaPredicted RBP12.4□□□□□ -0.42
VPS39-205ENST00000562258 SLC26A8Q96RN1 970 aa12.39□□□□□ -0.43
VPS39-205ENST00000562258 EFCAB5A4FU69 1503 aa12.39□□□□□ -0.43
VPS39-205ENST00000562258 NPM2Q86SE8 214 aaKnown RBP12.39□□□□□ -0.43
VPS39-205ENST00000562258 CCDC9Q9Y3X0 531 aaKnown RBP12.38□□□□□ -0.43
VPS39-205ENST00000562258 WDR62O43379 1518 aa12.37□□□□□ -0.43
VPS39-205ENST00000562258 ST20-MTHFSA0A0A6YYL1 179 aa12.37□□□□□ -0.43
VPS39-205ENST00000562258 BIVM-ERCC5R4GMW8 1640 aa12.37□□□□□ -0.43
VPS39-205ENST00000562258 SUGP2Q8IX01 1082 aaKnown RBP eCLIP12.37□□□□□ -0.43
VPS39-205ENST00000562258 EIF4G3O43432 1585 aaKnown RBP12.37□□□□□ -0.43
VPS39-205ENST00000562258 CFAP53Q96M91 514 aa12.37□□□□□ -0.43
VPS39-205ENST00000562258 CUL7Q14999 1698 aa12.36□□□□□ -0.43
VPS39-205ENST00000562258 FBXO31Q5XUX0 539 aaPredicted RBP12.35□□□□□ -0.43
VPS39-205ENST00000562258 ZBTB47Q9UFB7 747 aaPredicted RBP12.35□□□□□ -0.43
VPS39-205ENST00000562258 ASXL2Q76L83 1435 aa12.35□□□□□ -0.43
VPS39-205ENST00000562258 CSB-PGBD3P0DP91 1061 aa12.34□□□□□ -0.43
VPS39-205ENST00000562258 HDGFL2Q7Z4V5 671 aaPredicted RBP12.34□□□□□ -0.43
VPS39-205ENST00000562258 LAS1LQ9Y4W2 734 aaKnown RBP12.34□□□□□ -0.43
VPS39-205ENST00000562258 C9orf84Q5VXU9 1444 aa12.34□□□□□ -0.43
VPS39-205ENST00000562258 MORC1Q86VD1 984 aa12.34□□□□□ -0.43
VPS39-205ENST00000562258 LTV1Q96GA3 475 aaPredicted RBP12.33□□□□□ -0.44
VPS39-205ENST00000562258 TIMELESSQ9UNS1 1208 aa12.33□□□□□ -0.44
VPS39-205ENST00000562258 CFAP70Q5T0N1 1121 aa12.33□□□□□ -0.44
VPS39-205ENST00000562258 RBM33Q96EV2 1170 aaKnown RBP12.32□□□□□ -0.44
VPS39-205ENST00000562258 ATP10BO94823 1461 aa12.31□□□□□ -0.44
VPS39-205ENST00000562258 DHX57Q6P158 1386 aaKnown RBP12.31□□□□□ -0.44
VPS39-205ENST00000562258 THEMISQ8N1K5 641 aaPredicted RBP12.31□□□□□ -0.44
VPS39-205ENST00000562258 ADGRL1O94910 1474 aa12.31□□□□□ -0.44
VPS39-205ENST00000562258 ERICH6Q7L0X2 663 aa12.3□□□□□ -0.44
VPS39-205ENST00000562258 PROSER2Q86WR7 435 aaPredicted RBP12.3□□□□□ -0.44
VPS39-205ENST00000562258 HECW1Q76N89 1606 aa12.29□□□□□ -0.44
VPS39-205ENST00000562258 NUDCQ9Y266 331 aa12.29□□□□□ -0.44
VPS39-205ENST00000562258 FANCAO15360 1455 aa12.28□□□□□ -0.44
VPS39-205ENST00000562258 PCF11O94913 1555 aaKnown RBP12.27□□□□□ -0.44
VPS39-205ENST00000562258 NUTM2GQ5VZR2 741 aa12.27□□□□□ -0.45
VPS39-205ENST00000562258 MAPK8IP3Q9UPT6 1336 aa12.27□□□□□ -0.45
VPS39-205ENST00000562258 ATF3P18847 181 aa12.26□□□□□ -0.45
VPS39-205ENST00000562258 ABCF1Q8NE71 845 aaKnown RBP eCLIP12.26□□□□□ -0.45
VPS39-205ENST00000562258 ANKLE2Q86XL3 938 aa12.26□□□□□ -0.45
VPS39-205ENST00000562258 TERF2IPQ9NYB0 399 aa12.26□□□□□ -0.45
VPS39-205ENST00000562258 TIAM1Q13009 1591 aa12.25□□□□□ -0.45
VPS39-205ENST00000562258 MIA2Q96PC5 1412 aa12.25□□□□□ -0.45
VPS39-205ENST00000562258 EHBP1L1Q8N3D4 1523 aa12.25□□□□□ -0.45
VPS39-205ENST00000562258 POGZQ7Z3K3 1410 aa12.25□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms