RNA–Protein interactions for RNA: ENST00000562078.5

CLK3-206, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 2,455 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-206ENST00000562078 NEFLP07196 543 aa18.72■□□□□ 0.59
CLK3-206ENST00000562078 ARHGEF11O15085 1522 aa18.71■□□□□ 0.59
CLK3-206ENST00000562078 MYT1LQ9UL68 1186 aa18.71■□□□□ 0.59
CLK3-206ENST00000562078 PTPN23Q9H3S7 1636 aa18.71■□□□□ 0.59
CLK3-206ENST00000562078 CCDC136Q96JN2 1154 aa18.7■□□□□ 0.58
CLK3-206ENST00000562078 CDK11AQ9UQ88 783 aaPredicted RBP18.69■□□□□ 0.58
CLK3-206ENST00000562078 UACAQ9BZF9 1416 aa18.68■□□□□ 0.58
CLK3-206ENST00000562078 ATP10BO94823 1461 aa18.64■□□□□ 0.57
CLK3-206ENST00000562078 ABCC2Q92887 1545 aa18.64■□□□□ 0.57
CLK3-206ENST00000562078 PTPRKQ15262 1439 aa18.64■□□□□ 0.57
CLK3-206ENST00000562078 TROQ12816 1431 aaPredicted RBP18.61■□□□□ 0.57
CLK3-206ENST00000562078 HFM1A2PYH4 1435 aa18.58■□□□□ 0.57
CLK3-206ENST00000562078 TCOF1Q13428 1488 aaKnown RBP18.58■□□□□ 0.57
CLK3-206ENST00000562078 PLEKHD1A6NEE1 506 aa18.58■□□□□ 0.57
CLK3-206ENST00000562078 ADCY10Q96PN6 1610 aa18.58■□□□□ 0.57
CLK3-206ENST00000562078 KIF14Q15058 1648 aa18.58■□□□□ 0.56
CLK3-206ENST00000562078 GCC2Q8IWJ2 1684 aa18.56■□□□□ 0.56
CLK3-206ENST00000562078 ERICH6BQ5W0A0 696 aa18.56■□□□□ 0.56
CLK3-206ENST00000562078 ZCCHC11Q5TAX3 1644 aaKnown RBP18.55■□□□□ 0.56
CLK3-206ENST00000562078 UHRF1BP1LA0JNW5 1464 aa18.55■□□□□ 0.56
CLK3-206ENST00000562078 UBE2Q2Q8WVN8 375 aa18.55■□□□□ 0.56
CLK3-206ENST00000562078 NAIPQ13075 1403 aa18.53■□□□□ 0.56
CLK3-206ENST00000562078 NBR1Q14596 966 aa18.53■□□□□ 0.56
CLK3-206ENST00000562078 MIA2Q96PC5 1412 aa18.52■□□□□ 0.56
CLK3-206ENST00000562078 ITSN2Q9NZM3 1697 aa18.52■□□□□ 0.56
CLK3-206ENST00000562078 TRIM52Q96A61 297 aa18.52■□□□□ 0.56
CLK3-206ENST00000562078 ZBTB4Q9P1Z0 1013 aaPredicted RBP18.5■□□□□ 0.55
CLK3-206ENST00000562078 KDM5BQ9UGL1 1544 aa18.49■□□□□ 0.55
CLK3-206ENST00000562078 SIN3AQ96ST3 1273 aa18.49■□□□□ 0.55
CLK3-206ENST00000562078 IL27Q8NEV9 243 aa18.47■□□□□ 0.55
CLK3-206ENST00000562078 CDC42BPAQ5VT25 1732 aa18.47■□□□□ 0.55
CLK3-206ENST00000562078 RTN4Q9NQC3 1192 aaKnown RBP18.46■□□□□ 0.55
CLK3-206ENST00000562078 CHIC2Q9UKJ5 165 aa18.46■□□□□ 0.55
CLK3-206ENST00000562078 KDM6BO15054 1643 aa18.46■□□□□ 0.54
CLK3-206ENST00000562078 DNMT1P26358 1616 aaKnown RBP18.46■□□□□ 0.54
CLK3-206ENST00000562078 GPATCH8Q9UKJ3 1502 aaKnown RBP18.44■□□□□ 0.54
CLK3-206ENST00000562078 RRP7BPQ9NSQ0 103 aa18.44■□□□□ 0.54
CLK3-206ENST00000562078 ABCC10Q5T3U5 1492 aa18.44■□□□□ 0.54
CLK3-206ENST00000562078 AKNAQ7Z591 1439 aa18.43■□□□□ 0.54
CLK3-206ENST00000562078 CFDP1Q9UEE9 299 aaPredicted RBP18.43■□□□□ 0.54
CLK3-206ENST00000562078 IRX6P78412 446 aaPredicted RBP18.42■□□□□ 0.54
CLK3-206ENST00000562078 DAPK1P53355 1430 aa18.4■□□□□ 0.54
CLK3-206ENST00000562078 TTC37Q6PGP7 1564 aa18.4■□□□□ 0.54
CLK3-206ENST00000562078 RIMBP3CA6NJZ7 1639 aa18.4■□□□□ 0.54
CLK3-206ENST00000562078 RIMBP3BA6NNM3 1639 aa18.4■□□□□ 0.54
CLK3-206ENST00000562078 RIMBP3Q9UFD9 1639 aa18.4■□□□□ 0.54
CLK3-206ENST00000562078 ZNF777Q9ULD5 760 aaPredicted RBP18.4■□□□□ 0.54
CLK3-206ENST00000562078 DDX10Q13206 875 aaKnown RBP18.39■□□□□ 0.53
CLK3-206ENST00000562078 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP18.39■□□□□ 0.53
CLK3-206ENST00000562078 CAMSAP2Q08AD1 1489 aa18.39■□□□□ 0.53
CLK3-206ENST00000562078 ZNF644Q9H582 1327 aaPredicted RBP18.38■□□□□ 0.53
CLK3-206ENST00000562078 PAK3O75914 559 aaPredicted RBP18.38■□□□□ 0.53
CLK3-206ENST00000562078 NOP58Q9Y2X3 529 aaKnown RBP18.38■□□□□ 0.53
CLK3-206ENST00000562078 MYO5CQ9NQX4 1742 aa18.38■□□□□ 0.53
CLK3-206ENST00000562078 PREX2Q70Z35 1606 aa18.38■□□□□ 0.53
CLK3-206ENST00000562078 NPM1P06748 294 aaKnown RBP eCLIP18.38■□□□□ 0.53
CLK3-206ENST00000562078 CDC42BPBQ9Y5S2 1711 aa18.37■□□□□ 0.53
CLK3-206ENST00000562078 CROCC2H7BZ55 1655 aa18.36■□□□□ 0.53
CLK3-206ENST00000562078 ADGBQ8N7X0 1667 aa18.36■□□□□ 0.53
CLK3-206ENST00000562078 ABCC5O15440 1437 aa18.36■□□□□ 0.53
CLK3-206ENST00000562078 WDR7Q9Y4E6 1490 aa18.35■□□□□ 0.53
CLK3-206ENST00000562078 TIMELESSQ9UNS1 1208 aa18.33■□□□□ 0.53
CLK3-206ENST00000562078 ARHGAP5Q13017 1502 aa18.32■□□□□ 0.52
CLK3-206ENST00000562078 CYB5RLQ6IPT4 315 aa18.32■□□□□ 0.52
CLK3-206ENST00000562078 ASXL2Q76L83 1435 aa18.32■□□□□ 0.52
CLK3-206ENST00000562078 DENND4BO75064 1496 aaPredicted RBP18.32■□□□□ 0.52
CLK3-206ENST00000562078 ROCK1Q13464 1354 aa18.31■□□□□ 0.52
CLK3-206ENST00000562078 TONSLQ96HA7 1378 aa18.31■□□□□ 0.52
CLK3-206ENST00000562078 SAMD9LQ8IVG5 1584 aa18.29■□□□□ 0.52
CLK3-206ENST00000562078 PPP1R15AO75807 674 aaPredicted RBP18.27■□□□□ 0.51
CLK3-206ENST00000562078 RTL5Q5HYW3 569 aaPredicted RBP18.25■□□□□ 0.51
CLK3-206ENST00000562078 ABCA9Q8IUA7 1624 aa18.25■□□□□ 0.51
CLK3-206ENST00000562078 PLCH2O75038 1416 aa18.24■□□□□ 0.51
CLK3-206ENST00000562078 CCER2I3L3R5 266 aa18.23■□□□□ 0.51
CLK3-206ENST00000562078 DAXXQ9UER7 740 aaPredicted RBP18.23■□□□□ 0.51
CLK3-206ENST00000562078 SYCP2Q9BX26 1530 aa18.22■□□□□ 0.51
CLK3-206ENST00000562078 HNRNPMP52272 730 aaKnown RBP eCLIP18.22■□□□□ 0.51
CLK3-206ENST00000562078 ARHGEF5Q12774 1597 aa18.22■□□□□ 0.51
CLK3-206ENST00000562078 MPHOSPH9Q99550 1183 aa18.21■□□□□ 0.51
CLK3-206ENST00000562078 HIRIP3Q9BW71 556 aaPredicted RBP18.21■□□□□ 0.51
CLK3-206ENST00000562078 ADGRL2O95490 1459 aa18.21■□□□□ 0.51
CLK3-206ENST00000562078 NCOA1Q15788 1441 aa18.2■□□□□ 0.5
CLK3-206ENST00000562078 EFCAB2Q5VUJ9 269 aa18.2■□□□□ 0.5
CLK3-206ENST00000562078 CCDC141Q6ZP82 1450 aa18.19■□□□□ 0.5
CLK3-206ENST00000562078 PLEKHH2Q8IVE3 1493 aa18.19■□□□□ 0.5
CLK3-206ENST00000562078 ARAP3Q8WWN8 1544 aa18.18■□□□□ 0.5
CLK3-206ENST00000562078 MBD5Q9P267 1494 aa18.18■□□□□ 0.5
CLK3-206ENST00000562078 ANP32CO43423 234 aa18.18■□□□□ 0.5
CLK3-206ENST00000562078 FOXD1Q16676 465 aa18.18■□□□□ 0.5
CLK3-206ENST00000562078 SHANK2Q9UPX8 1470 aa18.18■□□□□ 0.5
CLK3-206ENST00000562078 TSPY4P0CV99 314 aa18.17■□□□□ 0.5
CLK3-206ENST00000562078 TSPY10P0CW01 314 aa18.17■□□□□ 0.5
CLK3-206ENST00000562078 C9orf84Q5VXU9 1444 aa18.17■□□□□ 0.5
CLK3-206ENST00000562078 PPP4R2Q9NY27 417 aa18.17■□□□□ 0.5
CLK3-206ENST00000562078 ABCC1P33527 1531 aa18.15■□□□□ 0.5
CLK3-206ENST00000562078 EIF5BO60841 1220 aaKnown RBP18.15■□□□□ 0.5
CLK3-206ENST00000562078 B4GALNT3Q6L9W6 998 aa18.15■□□□□ 0.5
CLK3-206ENST00000562078 ANKRD30AQ9BXX3 1397 aa18.15■□□□□ 0.5
CLK3-206ENST00000562078 FANCAO15360 1455 aa18.14■□□□□ 0.49
CLK3-206ENST00000562078 KIAA1107Q9UPP5 1409 aa18.14■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms