RNA–Protein interactions for RNA: ENST00000561818.1

VPS39-204, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-204ENST00000561818 SHANK2Q9UPX8 1470 aa11□□□□□ -0.65
VPS39-204ENST00000561818 DNMT1P26358 1616 aaKnown RBP10.99□□□□□ -0.65
VPS39-204ENST00000561818 CFDP1Q9UEE9 299 aaPredicted RBP10.97□□□□□ -0.65
VPS39-204ENST00000561818 ARAP3Q8WWN8 1544 aa10.96□□□□□ -0.65
VPS39-204ENST00000561818 GPATCH8Q9UKJ3 1502 aaKnown RBP10.96□□□□□ -0.65
VPS39-204ENST00000561818 KDM5BQ9UGL1 1544 aa10.95□□□□□ -0.66
VPS39-204ENST00000561818 ADGRL2O95490 1459 aa10.95□□□□□ -0.66
VPS39-204ENST00000561818 CAMSAP2Q08AD1 1489 aa10.95□□□□□ -0.66
VPS39-204ENST00000561818 DAPK1P53355 1430 aa10.95□□□□□ -0.66
VPS39-204ENST00000561818 NAIPQ13075 1403 aa10.95□□□□□ -0.66
VPS39-204ENST00000561818 ARHGEF5Q12774 1597 aa10.94□□□□□ -0.66
VPS39-204ENST00000561818 ABCC10Q5T3U5 1492 aa10.94□□□□□ -0.66
VPS39-204ENST00000561818 ITGAEP38570 1179 aa10.94□□□□□ -0.66
VPS39-204ENST00000561818 ADGBQ8N7X0 1667 aa10.94□□□□□ -0.66
VPS39-204ENST00000561818 ANKRD30AQ9BXX3 1397 aa10.93□□□□□ -0.66
VPS39-204ENST00000561818 PREX2Q70Z35 1606 aa10.92□□□□□ -0.66
VPS39-204ENST00000561818 MAPK8IP2Q13387 824 aaPredicted RBP10.92□□□□□ -0.66
VPS39-204ENST00000561818 OSCARQ8IYS5 282 aa10.92□□□□□ -0.66
VPS39-204ENST00000561818 KIAA1107Q9UPP5 1409 aa10.92□□□□□ -0.66
VPS39-204ENST00000561818 CROCC2H7BZ55 1655 aa10.91□□□□□ -0.66
VPS39-204ENST00000561818 ABCC5O15440 1437 aa10.9□□□□□ -0.66
VPS39-204ENST00000561818 CDC42BPAQ5VT25 1732 aa10.89□□□□□ -0.67
VPS39-204ENST00000561818 TSPY4P0CV99 314 aa10.89□□□□□ -0.67
VPS39-204ENST00000561818 TSPY10P0CW01 314 aa10.89□□□□□ -0.67
VPS39-204ENST00000561818 CCDC141Q6ZP82 1450 aa10.88□□□□□ -0.67
VPS39-204ENST00000561818 MYO5CQ9NQX4 1742 aa10.88□□□□□ -0.67
VPS39-204ENST00000561818 ZCCHC11Q5TAX3 1644 aaKnown RBP10.87□□□□□ -0.67
VPS39-204ENST00000561818 MAST1Q9Y2H9 1570 aa10.87□□□□□ -0.67
VPS39-204ENST00000561818 MAPKBP1O60336 1514 aa10.87□□□□□ -0.67
VPS39-204ENST00000561818 PTPRKQ15262 1439 aa10.86□□□□□ -0.67
VPS39-204ENST00000561818 WDR7Q9Y4E6 1490 aa10.86□□□□□ -0.67
VPS39-204ENST00000561818 NCOA1Q15788 1441 aa10.85□□□□□ -0.67
VPS39-204ENST00000561818 C9orf84Q5VXU9 1444 aa10.85□□□□□ -0.67
VPS39-204ENST00000561818 ZNF316A6NFI3 1004 aaPredicted RBP10.85□□□□□ -0.67
VPS39-204ENST00000561818 PLCH2O75038 1416 aa10.84□□□□□ -0.67
VPS39-204ENST00000561818 ARHGAP5Q13017 1502 aa10.84□□□□□ -0.67
VPS39-204ENST00000561818 NPM1P06748 294 aaKnown RBP eCLIP10.84□□□□□ -0.67
VPS39-204ENST00000561818 CFAP74Q9C0B2 1584 aa10.84□□□□□ -0.67
VPS39-204ENST00000561818 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP10.84□□□□□ -0.67
VPS39-204ENST00000561818 EFCAB2Q5VUJ9 269 aa10.83□□□□□ -0.68
VPS39-204ENST00000561818 PLXNC1O60486 1568 aa10.82□□□□□ -0.68
VPS39-204ENST00000561818 TONSLQ96HA7 1378 aa10.82□□□□□ -0.68
VPS39-204ENST00000561818 ARID3CA6NKF2 412 aa10.82□□□□□ -0.68
VPS39-204ENST00000561818 KDM5DQ9BY66 1539 aa10.82□□□□□ -0.68
VPS39-204ENST00000561818 ANKRD50Q9ULJ7 1429 aa10.82□□□□□ -0.68
VPS39-204ENST00000561818 ERCC6L2Q5T890 1561 aa10.82□□□□□ -0.68
VPS39-204ENST00000561818 MBD5Q9P267 1494 aa10.81□□□□□ -0.68
VPS39-204ENST00000561818 RTEL1-TNFRSF6BF6WH68 1400 aa10.8□□□□□ -0.68
VPS39-204ENST00000561818 TTC37Q6PGP7 1564 aa10.8□□□□□ -0.68
VPS39-204ENST00000561818 SAMD9LQ8IVG5 1584 aa10.8□□□□□ -0.68
VPS39-204ENST00000561818 CDC42BPBQ9Y5S2 1711 aa10.8□□□□□ -0.68
VPS39-204ENST00000561818 ABCA9Q8IUA7 1624 aa10.8□□□□□ -0.68
VPS39-204ENST00000561818 ERBINQ96RT1 1412 aa10.79□□□□□ -0.68
VPS39-204ENST00000561818 SCAF1Q9H7N4 1312 aaKnown RBP10.79□□□□□ -0.68
VPS39-204ENST00000561818 KIF15Q9NS87 1388 aa10.78□□□□□ -0.68
VPS39-204ENST00000561818 ZNF777Q9ULD5 760 aaPredicted RBP10.78□□□□□ -0.68
VPS39-204ENST00000561818 ABCC1P33527 1531 aa10.78□□□□□ -0.68
VPS39-204ENST00000561818 DUOX2Q9NRD8 1548 aa10.78□□□□□ -0.68
VPS39-204ENST00000561818 TRIM52Q96A61 297 aa10.77□□□□□ -0.69
VPS39-204ENST00000561818 RRP7BPQ9NSQ0 103 aa10.77□□□□□ -0.69
VPS39-204ENST00000561818 DMRT2Q9Y5R5 561 aa10.77□□□□□ -0.69
VPS39-204ENST00000561818 SYCP2Q9BX26 1530 aa10.76□□□□□ -0.69
VPS39-204ENST00000561818 MPHOSPH9Q99550 1183 aa10.76□□□□□ -0.69
VPS39-204ENST00000561818 CHIC2Q9UKJ5 165 aa10.76□□□□□ -0.69
VPS39-204ENST00000561818 DIEXFQ68CQ4 756 aaKnown RBP10.75□□□□□ -0.69
VPS39-204ENST00000561818 ASXL2Q76L83 1435 aa10.75□□□□□ -0.69
VPS39-204ENST00000561818 SLC4A1APQ9BWU0 796 aaKnown RBP10.74□□□□□ -0.69
VPS39-204ENST00000561818 ZNF644Q9H582 1327 aaPredicted RBP10.74□□□□□ -0.69
VPS39-204ENST00000561818 RPRD2Q5VT52 1461 aaKnown RBP10.74□□□□□ -0.69
VPS39-204ENST00000561818 FANCAO15360 1455 aa10.73□□□□□ -0.69
VPS39-204ENST00000561818 UNC13BO14795 1591 aa10.72□□□□□ -0.69
VPS39-204ENST00000561818 PPP1R15AO75807 674 aaPredicted RBP10.71□□□□□ -0.69
VPS39-204ENST00000561818 ZNF518AQ6AHZ1 1483 aa10.71□□□□□ -0.69
VPS39-204ENST00000561818 PPP4R3CPQ6ZMV5 832 aa10.71□□□□□ -0.69
VPS39-204ENST00000561818 NEO1Q92859 1461 aa10.71□□□□□ -0.69
VPS39-204ENST00000561818 ANKRD30BQ9BXX2 1392 aa10.71□□□□□ -0.69
VPS39-204ENST00000561818 ARHGEF12Q9NZN5 1544 aa10.7□□□□□ -0.7
VPS39-204ENST00000561818 MAGI2Q86UL8 1455 aa10.7□□□□□ -0.7
VPS39-204ENST00000561818 EIF2AK4Q9P2K8 1649 aaKnown RBP10.69□□□□□ -0.7
VPS39-204ENST00000561818 PZPP20742 1482 aa10.69□□□□□ -0.7
VPS39-204ENST00000561818 TEX14Q8IWB6 1497 aa10.69□□□□□ -0.7
VPS39-204ENST00000561818 STAC3Q96MF2 364 aa10.69□□□□□ -0.7
VPS39-204ENST00000561818 ADGRL1O94910 1474 aa10.68□□□□□ -0.7
VPS39-204ENST00000561818 NUP155O75694 1391 aa10.68□□□□□ -0.7
VPS39-204ENST00000561818 SPAG9O60271 1321 aaKnown RBP10.68□□□□□ -0.7
VPS39-204ENST00000561818 KCNH8Q96L42 1107 aa10.68□□□□□ -0.7
VPS39-204ENST00000561818 KANK1Q14678 1352 aa10.67□□□□□ -0.7
VPS39-204ENST00000561818 IQGAP3Q86VI3 1631 aa10.67□□□□□ -0.7
VPS39-204ENST00000561818 HNRNPMP52272 730 aaKnown RBP eCLIP10.67□□□□□ -0.7
VPS39-204ENST00000561818 NEUROD1Q13562 356 aa10.67□□□□□ -0.7
VPS39-204ENST00000561818 GLI2P10070 1586 aa10.67□□□□□ -0.7
VPS39-204ENST00000561818 ZFYVE16Q7Z3T8 1539 aa10.67□□□□□ -0.7
VPS39-204ENST00000561818 ATP10AO60312 1499 aa10.67□□□□□ -0.7
VPS39-204ENST00000561818 KDM6BO15054 1643 aa10.66□□□□□ -0.7
VPS39-204ENST00000561818 INO80Q9ULG1 1556 aaPredicted RBP10.66□□□□□ -0.7
VPS39-204ENST00000561818 ATP7AQ04656 1500 aa10.66□□□□□ -0.7
VPS39-204ENST00000561818 FAM135AQ9P2D6 1515 aa10.66□□□□□ -0.7
VPS39-204ENST00000561818 CD109Q6YHK3 1445 aa10.66□□□□□ -0.7
VPS39-204ENST00000561818 DENND4BO75064 1496 aaPredicted RBP10.64□□□□□ -0.71
VPS39-204ENST00000561818 MLH3Q9UHC1 1453 aa10.63□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 70.7 ms