RNA–Protein interactions for RNA: ENST00000560679.1

TPM1-225, Transcript of tropomyosin 1, humanhuman

TSL 3

Gene TPM1, Length 292 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-225ENST00000560679 STRCQ7RTU9 1775 aa16.9■□□□□ 0.3
TPM1-225ENST00000560679 MLECQ14165 292 aa16.9■□□□□ 0.3
TPM1-225ENST00000560679 SCAPERQ9BY12 1400 aa16.89■□□□□ 0.29
TPM1-225ENST00000560679 RANGAP1P46060 587 aaPredicted RBP16.89■□□□□ 0.29
TPM1-225ENST00000560679 C9orf84Q5VXU9 1444 aa16.88■□□□□ 0.29
TPM1-225ENST00000560679 PLCH2O75038 1416 aa16.87■□□□□ 0.29
TPM1-225ENST00000560679 ATP10AO60312 1499 aa16.87■□□□□ 0.29
TPM1-225ENST00000560679 ILDR2Q71H61 639 aa16.86■□□□□ 0.29
TPM1-225ENST00000560679 MYO5CQ9NQX4 1742 aa16.85■□□□□ 0.29
TPM1-225ENST00000560679 KDM5CP41229 1560 aa16.84■□□□□ 0.29
TPM1-225ENST00000560679 KIF14Q15058 1648 aa16.83■□□□□ 0.28
TPM1-225ENST00000560679 EEA1Q15075 1411 aa16.82■□□□□ 0.28
TPM1-225ENST00000560679 DISP3Q9P2K9 1392 aa16.82■□□□□ 0.28
TPM1-225ENST00000560679 CEBPAP49715 358 aaPredicted RBP16.82■□□□□ 0.28
TPM1-225ENST00000560679 DIP2CQ9Y2E4 1556 aa16.81■□□□□ 0.28
TPM1-225ENST00000560679 SPATA31D1Q6ZQQ2 1576 aa16.8■□□□□ 0.28
TPM1-225ENST00000560679 ZNF518AQ6AHZ1 1483 aa16.8■□□□□ 0.28
TPM1-225ENST00000560679 REREQ9P2R6 1566 aa16.79■□□□□ 0.28
TPM1-225ENST00000560679 UHRF1BP1Q6BDS2 1440 aa16.79■□□□□ 0.28
TPM1-225ENST00000560679 ABCA6Q8N139 1617 aa16.78■□□□□ 0.28
TPM1-225ENST00000560679 C3P01024 1663 aa16.78■□□□□ 0.28
TPM1-225ENST00000560679 SOCS7O14512 581 aa16.77■□□□□ 0.28
TPM1-225ENST00000560679 LTBP4Q8N2S1 1624 aa16.75■□□□□ 0.27
TPM1-225ENST00000560679 PTPRTO14522 1441 aa16.74■□□□□ 0.27
TPM1-225ENST00000560679 ARHGAP5Q13017 1502 aa16.74■□□□□ 0.27
TPM1-225ENST00000560679 LRRIQ1Q96JM4 1722 aa16.73■□□□□ 0.27
TPM1-225ENST00000560679 SETD1BQ9UPS6 1966 aaKnown RBP16.73■□□□□ 0.27
TPM1-225ENST00000560679 EFCAB2Q5VUJ9 269 aa16.73■□□□□ 0.27
TPM1-225ENST00000560679 DMRT2Q9Y5R5 561 aa16.72■□□□□ 0.27
TPM1-225ENST00000560679 CDC42BPBQ9Y5S2 1711 aa16.72■□□□□ 0.27
TPM1-225ENST00000560679 TROQ12816 1431 aaPredicted RBP16.71■□□□□ 0.27
TPM1-225ENST00000560679 AFAP1Q8N556 730 aa16.71■□□□□ 0.27
TPM1-225ENST00000560679 ARHGAP35Q9NRY4 1499 aa16.71■□□□□ 0.27
TPM1-225ENST00000560679 AGLP35573 1532 aa16.7■□□□□ 0.26
TPM1-225ENST00000560679 MLH3Q9UHC1 1453 aa16.7■□□□□ 0.26
TPM1-225ENST00000560679 ABCC1P33527 1531 aa16.7■□□□□ 0.26
TPM1-225ENST00000560679 FMN1Q68DA7 1419 aa16.7■□□□□ 0.26
TPM1-225ENST00000560679 PREX2Q70Z35 1606 aa16.69■□□□□ 0.26
TPM1-225ENST00000560679 NCOA1Q15788 1441 aa16.69■□□□□ 0.26
TPM1-225ENST00000560679 ITSN2Q9NZM3 1697 aa16.69■□□□□ 0.26
TPM1-225ENST00000560679 IQSEC2Q5JU85 1478 aa16.68■□□□□ 0.26
TPM1-225ENST00000560679 TRAPPC8Q9Y2L5 1435 aa16.67■□□□□ 0.26
TPM1-225ENST00000560679 KIDINS220Q9ULH0 1771 aa16.66■□□□□ 0.26
TPM1-225ENST00000560679 CLIP1P30622 1438 aa16.64■□□□□ 0.25
TPM1-225ENST00000560679 ATP1B4Q9UN42 357 aaPredicted RBP16.63■□□□□ 0.25
TPM1-225ENST00000560679 MROH2AA6NES4 1674 aa16.62■□□□□ 0.25
TPM1-225ENST00000560679 CDK11AQ9UQ88 783 aaPredicted RBP16.62■□□□□ 0.25
TPM1-225ENST00000560679 CAMSAP1Q5T5Y3 1602 aa16.62■□□□□ 0.25
TPM1-225ENST00000560679 CNTLNQ9NXG0 1405 aa16.61■□□□□ 0.25
TPM1-225ENST00000560679 CDC42BPAQ5VT25 1732 aa16.6■□□□□ 0.25
TPM1-225ENST00000560679 MYT1LQ9UL68 1186 aa16.59■□□□□ 0.25
TPM1-225ENST00000560679 SAMD9LQ8IVG5 1584 aa16.59■□□□□ 0.25
TPM1-225ENST00000560679 ZNF142P52746 1687 aaPredicted RBP16.59■□□□□ 0.25
TPM1-225ENST00000560679 NPATQ14207 1427 aa16.58■□□□□ 0.24
TPM1-225ENST00000560679 MYO3AQ8NEV4 1616 aa16.57■□□□□ 0.24
TPM1-225ENST00000560679 EHMT2Q96KQ7 1210 aa16.56■□□□□ 0.24
TPM1-225ENST00000560679 PLXNC1O60486 1568 aa16.55■□□□□ 0.24
TPM1-225ENST00000560679 ESF1Q9H501 851 aaKnown RBP16.54■□□□□ 0.24
TPM1-225ENST00000560679 SYCP2Q9BX26 1530 aa16.54■□□□□ 0.24
TPM1-225ENST00000560679 CLTCQ00610 1675 aaKnown RBP16.53■□□□□ 0.24
TPM1-225ENST00000560679 ZNF335Q9H4Z2 1342 aaPredicted RBP16.53■□□□□ 0.24
TPM1-225ENST00000560679 UBTFP17480 764 aaKnown RBP16.53■□□□□ 0.24
TPM1-225ENST00000560679 CCDC18Q5T9S5 1454 aa16.53■□□□□ 0.24
TPM1-225ENST00000560679 SUPT6HQ7KZ85 1726 aaKnown RBP16.53■□□□□ 0.24
TPM1-225ENST00000560679 INO80Q9ULG1 1556 aaPredicted RBP16.52■□□□□ 0.24
TPM1-225ENST00000560679 CEP170BQ9Y4F5 1589 aaPredicted RBP16.52■□□□□ 0.24
TPM1-225ENST00000560679 PLA2R1Q13018 1463 aa16.52■□□□□ 0.23
TPM1-225ENST00000560679 TCOF1Q13428 1488 aaKnown RBP16.52■□□□□ 0.23
TPM1-225ENST00000560679 NCKAP5LQ9HCH0 1330 aa16.51■□□□□ 0.23
TPM1-225ENST00000560679 CASKIN1Q8WXD9 1431 aa16.51■□□□□ 0.23
TPM1-225ENST00000560679 ZMYM3Q14202 1370 aa16.51■□□□□ 0.23
TPM1-225ENST00000560679 ATP7AQ04656 1500 aa16.5■□□□□ 0.23
TPM1-225ENST00000560679 PTPRKQ15262 1439 aa16.49■□□□□ 0.23
TPM1-225ENST00000560679 UBAP1LF5GYI3 381 aa16.47■□□□□ 0.23
TPM1-225ENST00000560679 GPATCH8Q9UKJ3 1502 aaKnown RBP16.46■□□□□ 0.23
TPM1-225ENST00000560679 MED1Q15648 1581 aaPredicted RBP16.44■□□□□ 0.22
TPM1-225ENST00000560679 A2MP01023 1474 aa16.44■□□□□ 0.22
TPM1-225ENST00000560679 FYCO1Q9BQS8 1478 aa16.44■□□□□ 0.22
TPM1-225ENST00000560679 SPAG9O60271 1321 aaKnown RBP16.44■□□□□ 0.22
TPM1-225ENST00000560679 PKD2Q13563 968 aa16.42■□□□□ 0.22
TPM1-225ENST00000560679 NEURL4Q96JN8 1562 aa16.42■□□□□ 0.22
TPM1-225ENST00000560679 DNMT1P26358 1616 aaKnown RBP16.41■□□□□ 0.22
TPM1-225ENST00000560679 ZNF777Q9ULD5 760 aaPredicted RBP16.41■□□□□ 0.22
TPM1-225ENST00000560679 KIAA1107Q9UPP5 1409 aa16.41■□□□□ 0.22
TPM1-225ENST00000560679 POLR1AO95602 1720 aaPredicted RBP16.4■□□□□ 0.22
TPM1-225ENST00000560679 HNRNPMP52272 730 aaKnown RBP eCLIP16.4■□□□□ 0.22
TPM1-225ENST00000560679 A2ML1A8K2U0 1454 aa16.4■□□□□ 0.22
TPM1-225ENST00000560679 ADGBQ8N7X0 1667 aa16.4■□□□□ 0.22
TPM1-225ENST00000560679 PLEKHH2Q8IVE3 1493 aa16.38■□□□□ 0.21
TPM1-225ENST00000560679 PPP6R1Q9UPN7 881 aa16.38■□□□□ 0.21
TPM1-225ENST00000560679 ALKQ9UM73 1620 aa16.36■□□□□ 0.21
TPM1-225ENST00000560679 CPS1P31327 1500 aa16.35■□□□□ 0.21
TPM1-225ENST00000560679 HSPA1LP34931 641 aa16.35■□□□□ 0.21
TPM1-225ENST00000560679 GGT6Q6P531 493 aa16.34■□□□□ 0.21
TPM1-225ENST00000560679 TIAM1Q13009 1591 aa16.34■□□□□ 0.21
TPM1-225ENST00000560679 VWDEQ8N2E2 1590 aa16.34■□□□□ 0.21
TPM1-225ENST00000560679 SHANK2Q9UPX8 1470 aa16.33■□□□□ 0.2
TPM1-225ENST00000560679 MBD5Q9P267 1494 aa16.32■□□□□ 0.2
TPM1-225ENST00000560679 CCNB3Q8WWL7 1395 aa16.31■□□□□ 0.2
TPM1-225ENST00000560679 CFDP1Q9UEE9 299 aaPredicted RBP16.31■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 45.7 ms