RNA–Protein interactions for RNA: ENST00000560467.1

LDLR-212, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 928 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-212ENST00000560467 SIGLEC1Q9BZZ2 1709 aa19.05■□□□□ 0.64
LDLR-212ENST00000560467 ATP1B4Q9UN42 357 aaPredicted RBP19.04■□□□□ 0.64
LDLR-212ENST00000560467 HECW1Q76N89 1606 aa19.03■□□□□ 0.64
LDLR-212ENST00000560467 MAGI2Q86UL8 1455 aa19.03■□□□□ 0.64
LDLR-212ENST00000560467 UBTFP17480 764 aaKnown RBP19.01■□□□□ 0.63
LDLR-212ENST00000560467 ARHGAP35Q9NRY4 1499 aa19■□□□□ 0.63
LDLR-212ENST00000560467 FMN1Q68DA7 1419 aa18.99■□□□□ 0.63
LDLR-212ENST00000560467 EFCAB2Q5VUJ9 269 aa18.97■□□□□ 0.63
LDLR-212ENST00000560467 ATP10AO60312 1499 aa18.96■□□□□ 0.63
LDLR-212ENST00000560467 C9orf84Q5VXU9 1444 aa18.95■□□□□ 0.62
LDLR-212ENST00000560467 KIF14Q15058 1648 aa18.95■□□□□ 0.62
LDLR-212ENST00000560467 ARHGEF12Q9NZN5 1544 aa18.94■□□□□ 0.62
LDLR-212ENST00000560467 TROQ12816 1431 aaPredicted RBP18.93■□□□□ 0.62
LDLR-212ENST00000560467 CDK11AQ9UQ88 783 aaPredicted RBP18.93■□□□□ 0.62
LDLR-212ENST00000560467 CEBPAP49715 358 aaPredicted RBP18.91■□□□□ 0.62
LDLR-212ENST00000560467 AFAP1Q8N556 730 aa18.91■□□□□ 0.62
LDLR-212ENST00000560467 FER1L4A9Z1Z3 1794 aa18.91■□□□□ 0.62
LDLR-212ENST00000560467 ARHGAP5Q13017 1502 aa18.9■□□□□ 0.62
LDLR-212ENST00000560467 ZNF518AQ6AHZ1 1483 aa18.9■□□□□ 0.62
LDLR-212ENST00000560467 MYO5CQ9NQX4 1742 aa18.89■□□□□ 0.61
LDLR-212ENST00000560467 CLIP1P30622 1438 aa18.88■□□□□ 0.61
LDLR-212ENST00000560467 KDM5CP41229 1560 aa18.87■□□□□ 0.61
LDLR-212ENST00000560467 CERKQ8TCT0 537 aa18.86■□□□□ 0.61
LDLR-212ENST00000560467 MYT1LQ9UL68 1186 aa18.86■□□□□ 0.61
LDLR-212ENST00000560467 DIP2CQ9Y2E4 1556 aa18.83■□□□□ 0.6
LDLR-212ENST00000560467 TRAPPC8Q9Y2L5 1435 aa18.82■□□□□ 0.6
LDLR-212ENST00000560467 LOC105371045A0A1W2PR82 267 aa18.8■□□□□ 0.6
LDLR-212ENST00000560467 LRRIQ1Q96JM4 1722 aa18.8■□□□□ 0.6
LDLR-212ENST00000560467 MLH3Q9UHC1 1453 aa18.79■□□□□ 0.6
LDLR-212ENST00000560467 UHRF1BP1Q6BDS2 1440 aa18.79■□□□□ 0.6
LDLR-212ENST00000560467 PREX1Q8TCU6 1659 aa18.79■□□□□ 0.6
LDLR-212ENST00000560467 ABCA6Q8N139 1617 aa18.78■□□□□ 0.6
LDLR-212ENST00000560467 CASKIN1Q8WXD9 1431 aa18.78■□□□□ 0.6
LDLR-212ENST00000560467 ABCC1P33527 1531 aa18.78■□□□□ 0.6
LDLR-212ENST00000560467 REREQ9P2R6 1566 aa18.77■□□□□ 0.6
LDLR-212ENST00000560467 CCDC18Q5T9S5 1454 aa18.76■□□□□ 0.59
LDLR-212ENST00000560467 PREX2Q70Z35 1606 aa18.75■□□□□ 0.59
LDLR-212ENST00000560467 CDC42BPBQ9Y5S2 1711 aa18.74■□□□□ 0.59
LDLR-212ENST00000560467 AGLP35573 1532 aa18.74■□□□□ 0.59
LDLR-212ENST00000560467 ESF1Q9H501 851 aaKnown RBP18.71■□□□□ 0.59
LDLR-212ENST00000560467 DMRT2Q9Y5R5 561 aa18.71■□□□□ 0.59
LDLR-212ENST00000560467 STRCQ7RTU9 1775 aa18.7■□□□□ 0.58
LDLR-212ENST00000560467 ITSN2Q9NZM3 1697 aa18.7■□□□□ 0.58
LDLR-212ENST00000560467 ZNF777Q9ULD5 760 aaPredicted RBP18.69■□□□□ 0.58
LDLR-212ENST00000560467 FYCO1Q9BQS8 1478 aa18.69■□□□□ 0.58
LDLR-212ENST00000560467 C3P01024 1663 aa18.67■□□□□ 0.58
LDLR-212ENST00000560467 KIDINS220Q9ULH0 1771 aa18.67■□□□□ 0.58
LDLR-212ENST00000560467 PTPRTO14522 1441 aa18.66■□□□□ 0.58
LDLR-212ENST00000560467 CNTLNQ9NXG0 1405 aa18.66■□□□□ 0.58
LDLR-212ENST00000560467 SAMD9LQ8IVG5 1584 aa18.66■□□□□ 0.58
LDLR-212ENST00000560467 SYCP2Q9BX26 1530 aa18.65■□□□□ 0.58
LDLR-212ENST00000560467 GPATCH8Q9UKJ3 1502 aaKnown RBP18.65■□□□□ 0.58
LDLR-212ENST00000560467 CDC42BPAQ5VT25 1732 aa18.64■□□□□ 0.57
LDLR-212ENST00000560467 HNRNPMP52272 730 aaKnown RBP eCLIP18.64■□□□□ 0.57
LDLR-212ENST00000560467 SPAG9O60271 1321 aaKnown RBP18.64■□□□□ 0.57
LDLR-212ENST00000560467 NCOA1Q15788 1441 aa18.63■□□□□ 0.57
LDLR-212ENST00000560467 SETD1BQ9UPS6 1966 aaKnown RBP18.62■□□□□ 0.57
LDLR-212ENST00000560467 NPATQ14207 1427 aa18.59■□□□□ 0.57
LDLR-212ENST00000560467 ZMYM3Q14202 1370 aa18.59■□□□□ 0.57
LDLR-212ENST00000560467 DISP3Q9P2K9 1392 aa18.59■□□□□ 0.57
LDLR-212ENST00000560467 CFDP1Q9UEE9 299 aaPredicted RBP18.59■□□□□ 0.57
LDLR-212ENST00000560467 LTBP4Q8N2S1 1624 aa18.59■□□□□ 0.57
LDLR-212ENST00000560467 ATP7AQ04656 1500 aa18.58■□□□□ 0.56
LDLR-212ENST00000560467 KIAA1107Q9UPP5 1409 aa18.57■□□□□ 0.56
LDLR-212ENST00000560467 CCNB3Q8WWL7 1395 aa18.57■□□□□ 0.56
LDLR-212ENST00000560467 ILDR2Q71H61 639 aa18.56■□□□□ 0.56
LDLR-212ENST00000560467 CAMSAP1Q5T5Y3 1602 aa18.56■□□□□ 0.56
LDLR-212ENST00000560467 A2MP01023 1474 aa18.55■□□□□ 0.56
LDLR-212ENST00000560467 PLEKHH2Q8IVE3 1493 aa18.55■□□□□ 0.56
LDLR-212ENST00000560467 PLXNC1O60486 1568 aa18.55■□□□□ 0.56
LDLR-212ENST00000560467 NCKAP5LQ9HCH0 1330 aa18.54■□□□□ 0.56
LDLR-212ENST00000560467 INO80Q9ULG1 1556 aaPredicted RBP18.54■□□□□ 0.56
LDLR-212ENST00000560467 MTUS2Q5JR59 1369 aa18.54■□□□□ 0.56
LDLR-212ENST00000560467 MROH2AA6NES4 1674 aa18.53■□□□□ 0.56
LDLR-212ENST00000560467 ZNF644Q9H582 1327 aaPredicted RBP18.52■□□□□ 0.56
LDLR-212ENST00000560467 SUPT6HQ7KZ85 1726 aaKnown RBP18.52■□□□□ 0.56
LDLR-212ENST00000560467 GGT6Q6P531 493 aa18.52■□□□□ 0.56
LDLR-212ENST00000560467 PTPRKQ15262 1439 aa18.51■□□□□ 0.55
LDLR-212ENST00000560467 ZNF335Q9H4Z2 1342 aaPredicted RBP18.5■□□□□ 0.55
LDLR-212ENST00000560467 IQSEC2Q5JU85 1478 aa18.49■□□□□ 0.55
LDLR-212ENST00000560467 CLTCQ00610 1675 aaKnown RBP18.48■□□□□ 0.55
LDLR-212ENST00000560467 TIAM1Q13009 1591 aa18.47■□□□□ 0.55
LDLR-212ENST00000560467 MYO3AQ8NEV4 1616 aa18.47■□□□□ 0.55
LDLR-212ENST00000560467 CEP170BQ9Y4F5 1589 aaPredicted RBP18.47■□□□□ 0.55
LDLR-212ENST00000560467 PLA2R1Q13018 1463 aa18.46■□□□□ 0.55
LDLR-212ENST00000560467 MBD5Q9P267 1494 aa18.46■□□□□ 0.55
LDLR-212ENST00000560467 SPATA31D1Q6ZQQ2 1576 aa18.46■□□□□ 0.55
LDLR-212ENST00000560467 CEP162Q5TB80 1403 aa18.45■□□□□ 0.54
LDLR-212ENST00000560467 TCOF1Q13428 1488 aaKnown RBP18.45■□□□□ 0.54
LDLR-212ENST00000560467 PKD2Q13563 968 aa18.44■□□□□ 0.54
LDLR-212ENST00000560467 ZNF142P52746 1687 aaPredicted RBP18.44■□□□□ 0.54
LDLR-212ENST00000560467 EHBP1L1Q8N3D4 1523 aa18.44■□□□□ 0.54
LDLR-212ENST00000560467 SOCS7O14512 581 aa18.43■□□□□ 0.54
LDLR-212ENST00000560467 UBAP1LF5GYI3 381 aa18.42■□□□□ 0.54
LDLR-212ENST00000560467 PPP6R1Q9UPN7 881 aa18.42■□□□□ 0.54
LDLR-212ENST00000560467 DHX29Q7Z478 1369 aaKnown RBP18.41■□□□□ 0.54
LDLR-212ENST00000560467 RTEL1-TNFRSF6BF6WH68 1400 aa18.4■□□□□ 0.54
LDLR-212ENST00000560467 A2ML1A8K2U0 1454 aa18.39■□□□□ 0.54
LDLR-212ENST00000560467 ADGBQ8N7X0 1667 aa18.39■□□□□ 0.53
LDLR-212ENST00000560467 FBXO31Q5XUX0 539 aaPredicted RBP18.38■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 65.1 ms