RNA–Protein interactions for RNA: ENST00000560371.5

TRAF3-208, Transcript of TNF receptor associated factor 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRAF3, Length 7,640 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAF3-208ENST00000560371 GLIPR1L2Q4G1C9 344 aa17.32■□□□□ 0.36
TRAF3-208ENST00000560371 KIF3BO15066 747 aa17.3■□□□□ 0.36
TRAF3-208ENST00000560371 TPRNQ4KMQ1 711 aa17.3■□□□□ 0.36
TRAF3-208ENST00000560371 EID1Q9Y6B2 187 aa17.3■□□□□ 0.36
TRAF3-208ENST00000560371 SETD5Q9C0A6 1442 aa17.3■□□□□ 0.36
TRAF3-208ENST00000560371 CSB-PGBD3P0DP91 1061 aa17.3■□□□□ 0.36
TRAF3-208ENST00000560371 NUP155O75694 1391 aa17.3■□□□□ 0.36
TRAF3-208ENST00000560371 RGS3P49796 1198 aa17.29■□□□□ 0.36
TRAF3-208ENST00000560371 FOXD1Q16676 465 aa17.29■□□□□ 0.36
TRAF3-208ENST00000560371 TRIM44Q96DX7 344 aaPredicted RBP17.29■□□□□ 0.36
TRAF3-208ENST00000560371 NAP1L2Q9ULW6 460 aaPredicted RBP17.28■□□□□ 0.36
TRAF3-208ENST00000560371 VPS8Q8N3P4 1428 aa17.28■□□□□ 0.36
TRAF3-208ENST00000560371 ANKRD30AQ9BXX3 1397 aa17.27■□□□□ 0.36
TRAF3-208ENST00000560371 TIMELESSQ9UNS1 1208 aa17.27■□□□□ 0.35
TRAF3-208ENST00000560371 WASHC2CQ9Y4E1 1318 aa17.26■□□□□ 0.35
TRAF3-208ENST00000560371 ROCK2O75116 1388 aaKnown RBP17.26■□□□□ 0.35
TRAF3-208ENST00000560371 JPH4Q96JJ6 628 aa17.25■□□□□ 0.35
TRAF3-208ENST00000560371 SPAG9O60271 1321 aaKnown RBP17.25■□□□□ 0.35
TRAF3-208ENST00000560371 CCDC9Q9Y3X0 531 aaKnown RBP17.24■□□□□ 0.35
TRAF3-208ENST00000560371 HNRNPMP52272 730 aaKnown RBP eCLIP17.24■□□□□ 0.354e-6■■■■□ 21.4
TRAF3-208ENST00000560371 CADPSQ9ULU8 1353 aa17.23■□□□□ 0.35
TRAF3-208ENST00000560371 ZNF330Q9Y3S2 320 aaPredicted RBP17.22■□□□□ 0.35
TRAF3-208ENST00000560371 RSPH4AQ5TD94 716 aa17.22■□□□□ 0.35
TRAF3-208ENST00000560371 MPHOSPH9Q99550 1183 aa17.22■□□□□ 0.35
TRAF3-208ENST00000560371 TOP2AP11388 1531 aaKnown RBP17.21■□□□□ 0.35
TRAF3-208ENST00000560371 CCDC18Q5T9S5 1454 aa17.2■□□□□ 0.34
TRAF3-208ENST00000560371 PTMAP06454 111 aaKnown RBP17.2■□□□□ 0.34
TRAF3-208ENST00000560371 KANK4Q5T7N3 995 aaPredicted RBP17.2■□□□□ 0.34
TRAF3-208ENST00000560371 U2AF1L5P0DN76 240 aaPredicted RBP17.2■□□□□ 0.34
TRAF3-208ENST00000560371 U2AF1Q01081 240 aaKnown RBP eCLIP17.2■□□□□ 0.34
TRAF3-208ENST00000560371 CALD1Q05682 793 aaKnown RBP17.2■□□□□ 0.34
TRAF3-208ENST00000560371 KTN1Q86UP2 1357 aaKnown RBP17.19■□□□□ 0.34
TRAF3-208ENST00000560371 NGDNQ8NEJ9 315 aaKnown RBP17.18■□□□□ 0.34
TRAF3-208ENST00000560371 HSP90AB1P08238 724 aaKnown RBP17.18■□□□□ 0.34
TRAF3-208ENST00000560371 EIF3AQ14152 1382 aaKnown RBP17.18■□□□□ 0.34
TRAF3-208ENST00000560371 CYB5RLQ6IPT4 315 aa17.18■□□□□ 0.34
TRAF3-208ENST00000560371 ISY1Q9ULR0 285 aaKnown RBP17.18■□□□□ 0.34
TRAF3-208ENST00000560371 PPP4R2Q9NY27 417 aa17.17■□□□□ 0.34
TRAF3-208ENST00000560371 TMX4Q9H1E5 349 aaPredicted RBP17.17■□□□□ 0.34
TRAF3-208ENST00000560371 TERF2IPQ9NYB0 399 aa17.17■□□□□ 0.34
TRAF3-208ENST00000560371 IPO8O15397 1037 aaKnown RBP17.16■□□□□ 0.34
TRAF3-208ENST00000560371 HSPA5P11021 654 aaKnown RBP17.16■□□□□ 0.34
TRAF3-208ENST00000560371 CHMP4AQ9BY43 222 aa17.16■□□□□ 0.34
TRAF3-208ENST00000560371 RAPGEF2Q9Y4G8 1499 aa17.15■□□□□ 0.34
TRAF3-208ENST00000560371 MCCP23508 829 aa17.13■□□□□ 0.33
TRAF3-208ENST00000560371 NUTM2DQ5VT03 806 aaPredicted RBP17.13■□□□□ 0.33
TRAF3-208ENST00000560371 NUTM2FA1L443 756 aa17.11■□□□□ 0.33
TRAF3-208ENST00000560371 PLCB2Q00722 1185 aa17.11■□□□□ 0.33
TRAF3-208ENST00000560371 SMARCA4P51532 1647 aa17.11■□□□□ 0.33
TRAF3-208ENST00000560371 RAB3GAP2Q9H2M9 1393 aa17.11■□□□□ 0.33
TRAF3-208ENST00000560371 FHOD3Q2V2M9 1422 aa17.11■□□□□ 0.33
TRAF3-208ENST00000560371 GOLGA6L4A6NEF3 574 aa17.11■□□□□ 0.33
TRAF3-208ENST00000560371 DNTTIP2Q5QJE6 756 aaKnown RBP17.11■□□□□ 0.33
TRAF3-208ENST00000560371 PRDM2Q13029 1718 aa17.1■□□□□ 0.33
TRAF3-208ENST00000560371 APBB1O00213 710 aa17.1■□□□□ 0.33
TRAF3-208ENST00000560371 OSCARQ8IYS5 282 aa17.1■□□□□ 0.33
TRAF3-208ENST00000560371 AMPHP49418 695 aa17.1■□□□□ 0.33
TRAF3-208ENST00000560371 CFAP44Q96MT7 982 aa17.1■□□□□ 0.33
TRAF3-208ENST00000560371 B4GALNT3Q6L9W6 998 aa17.09■□□□□ 0.33
TRAF3-208ENST00000560371 KIAA1211Q6ZU35 1233 aa17.09■□□□□ 0.33
TRAF3-208ENST00000560371 CLSTN1O94985 981 aa17.09■□□□□ 0.33
TRAF3-208ENST00000560371 STK31Q9BXU1 1019 aa17.08■□□□□ 0.32
TRAF3-208ENST00000560371 FANCD2Q9BXW9 1451 aa17.07■□□□□ 0.32
TRAF3-208ENST00000560371 RALBP1Q15311 655 aa17.07■□□□□ 0.32
TRAF3-208ENST00000560371 TAF7LQ5H9L4 462 aa17.06■□□□□ 0.32
TRAF3-208ENST00000560371 CHMP3Q9Y3E7 222 aa17.06■□□□□ 0.32
TRAF3-208ENST00000560371 ATAD2BQ9ULI0 1458 aa17.05■□□□□ 0.32
TRAF3-208ENST00000560371 HSCBQ8IWL3 235 aa17.05■□□□□ 0.32
TRAF3-208ENST00000560371 LTV1Q96GA3 475 aaPredicted RBP17.05■□□□□ 0.32
TRAF3-208ENST00000560371 GORABQ5T7V8 394 aa17.05■□□□□ 0.32
TRAF3-208ENST00000560371 SUGP2Q8IX01 1082 aaKnown RBP eCLIP17.04■□□□□ 0.32
TRAF3-208ENST00000560371 TRAK1Q9UPV9 953 aa17.04■□□□□ 0.32
TRAF3-208ENST00000560371 CCER2I3L3R5 266 aa17.04■□□□□ 0.32
TRAF3-208ENST00000560371 GNL2Q13823 731 aaKnown RBP17.04■□□□□ 0.32
TRAF3-208ENST00000560371 GOLGA6L6A8MZA4 724 aa17.03■□□□□ 0.32
TRAF3-208ENST00000560371 PTPRGP23470 1445 aa17.03■□□□□ 0.32
TRAF3-208ENST00000560371 NRDCO43847 1150 aa17.03■□□□□ 0.32
TRAF3-208ENST00000560371 HDAC5Q9UQL6 1122 aa17.03■□□□□ 0.32
TRAF3-208ENST00000560371 KAT6BQ8WYB5 2073 aa17.02■□□□□ 0.32
TRAF3-208ENST00000560371 G3V3G9 751 aa17.02■□□□□ 0.31
TRAF3-208ENST00000560371 DCAF8Q5TAQ9 597 aa17.02■□□□□ 0.31
TRAF3-208ENST00000560371 ITPRIPQ8IWB1 547 aa17.01■□□□□ 0.31
TRAF3-208ENST00000560371 GTF2E1P29083 439 aaPredicted RBP17■□□□□ 0.31
TRAF3-208ENST00000560371 L3MBTL2Q969R5 705 aa16.99■□□□□ 0.31
TRAF3-208ENST00000560371 EVA1CP58658 441 aa16.99■□□□□ 0.31
TRAF3-208ENST00000560371 CCDC144AA2RUR9 1427 aa16.98■□□□□ 0.31
TRAF3-208ENST00000560371 LMOD3Q0VAK6 560 aa16.98■□□□□ 0.31
TRAF3-208ENST00000560371 GPATCH3Q96I76 525 aa16.98■□□□□ 0.31
TRAF3-208ENST00000560371 VGFO15240 615 aaPredicted RBP16.98■□□□□ 0.31
TRAF3-208ENST00000560371 UACAQ9BZF9 1416 aa16.97■□□□□ 0.31
TRAF3-208ENST00000560371 RCAN3Q9UKA8 241 aa16.97■□□□□ 0.31
TRAF3-208ENST00000560371 SMC4Q9NTJ3 1288 aa16.97■□□□□ 0.31
TRAF3-208ENST00000560371 SLC4A10Q6U841 1118 aa16.96■□□□□ 0.31
TRAF3-208ENST00000560371 AEBP2Q6ZN18 517 aaPredicted RBP16.96■□□□□ 0.31
TRAF3-208ENST00000560371 PRM3Q9NNZ6 103 aa16.96■□□□□ 0.31
TRAF3-208ENST00000560371 RWDD1Q9H446 243 aaPredicted RBP16.95■□□□□ 0.3
TRAF3-208ENST00000560371 HMMRO75330 724 aa16.93■□□□□ 0.3
TRAF3-208ENST00000560371 FRAT2O75474 233 aaPredicted RBP16.93■□□□□ 0.3
TRAF3-208ENST00000560371 GAPVD1Q14C86 1478 aa16.92■□□□□ 0.3
TRAF3-208ENST00000560371 FAM69CQ0P6D2 419 aa16.92■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms