RNA–Protein interactions for RNA: ENST00000560299.1

SPG11-221, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 3

Gene SPG11, Length 437 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-221ENST00000560299 PPARGC1BQ86YN6 1023 aaKnown RBP9.89□□□□□ -0.83
SPG11-221ENST00000560299 TIAM1Q13009 1591 aa9.88□□□□□ -0.83
SPG11-221ENST00000560299 PPRC1Q5VV67 1664 aaKnown RBP9.88□□□□□ -0.83
SPG11-221ENST00000560299 TRIM26Q12899 539 aaPredicted RBP9.87□□□□□ -0.83
SPG11-221ENST00000560299 MTUS2Q5JR59 1369 aa9.87□□□□□ -0.83
SPG11-221ENST00000560299 PLCH2O75038 1416 aa9.86□□□□□ -0.83
SPG11-221ENST00000560299 LRRC9Q6ZRR7 1453 aa9.85□□□□□ -0.83
SPG11-221ENST00000560299 KANK4Q5T7N3 995 aaPredicted RBP9.85□□□□□ -0.83
SPG11-221ENST00000560299 CDK13Q14004 1512 aaKnown RBP9.85□□□□□ -0.83
SPG11-221ENST00000560299 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP9.85□□□□□ -0.83
SPG11-221ENST00000560299 CFAP74Q9C0B2 1584 aa9.84□□□□□ -0.83
SPG11-221ENST00000560299 KIF14Q15058 1648 aa9.84□□□□□ -0.83
SPG11-221ENST00000560299 LRRIQ1Q96JM4 1722 aa9.83□□□□□ -0.84
SPG11-221ENST00000560299 ARID3CA6NKF2 412 aa9.83□□□□□ -0.84
SPG11-221ENST00000560299 KCNH8Q96L42 1107 aa9.82□□□□□ -0.84
SPG11-221ENST00000560299 KDM6BO15054 1643 aa9.82□□□□□ -0.84
SPG11-221ENST00000560299 EHBP1L1Q8N3D4 1523 aa9.82□□□□□ -0.84
SPG11-221ENST00000560299 FANCAO15360 1455 aa9.8□□□□□ -0.84
SPG11-221ENST00000560299 MAGI2Q86UL8 1455 aa9.8□□□□□ -0.84
SPG11-221ENST00000560299 TTC37Q6PGP7 1564 aa9.8□□□□□ -0.84
SPG11-221ENST00000560299 COL17A1Q9UMD9 1497 aaPredicted RBP9.79□□□□□ -0.84
SPG11-221ENST00000560299 SUPT6HQ7KZ85 1726 aaKnown RBP9.79□□□□□ -0.84
SPG11-221ENST00000560299 EFCAB2Q5VUJ9 269 aa9.79□□□□□ -0.84
SPG11-221ENST00000560299 PCGF6Q9BYE7 350 aa9.78□□□□□ -0.84
SPG11-221ENST00000560299 AKNAQ7Z591 1439 aa9.78□□□□□ -0.84
SPG11-221ENST00000560299 KIAA1107Q9UPP5 1409 aa9.78□□□□□ -0.84
SPG11-221ENST00000560299 MYO5CQ9NQX4 1742 aa9.78□□□□□ -0.84
SPG11-221ENST00000560299 TSPOAP1O95153 1857 aa9.78□□□□□ -0.84
SPG11-221ENST00000560299 PLEKHH2Q8IVE3 1493 aa9.78□□□□□ -0.84
SPG11-221ENST00000560299 ZMYM4Q5VZL5 1548 aa9.77□□□□□ -0.85
SPG11-221ENST00000560299 GPATCH8Q9UKJ3 1502 aaKnown RBP9.77□□□□□ -0.85
SPG11-221ENST00000560299 PREX2Q70Z35 1606 aa9.76□□□□□ -0.85
SPG11-221ENST00000560299 DENND4BO75064 1496 aaPredicted RBP9.76□□□□□ -0.85
SPG11-221ENST00000560299 NCOA2Q15596 1464 aa9.75□□□□□ -0.85
SPG11-221ENST00000560299 NCBP3Q53F19 620 aaKnown RBP9.75□□□□□ -0.85
SPG11-221ENST00000560299 RSPH4AQ5TD94 716 aa9.75□□□□□ -0.85
SPG11-221ENST00000560299 CCNB3Q8WWL7 1395 aa9.75□□□□□ -0.85
SPG11-221ENST00000560299 POGZQ7Z3K3 1410 aa9.73□□□□□ -0.85
SPG11-221ENST00000560299 MIA2Q96PC5 1412 aa9.73□□□□□ -0.85
SPG11-221ENST00000560299 ADGRL1O94910 1474 aa9.73□□□□□ -0.85
SPG11-221ENST00000560299 ZNF518AQ6AHZ1 1483 aa9.73□□□□□ -0.85
SPG11-221ENST00000560299 KDM5CP41229 1560 aa9.73□□□□□ -0.85
SPG11-221ENST00000560299 CDC42BPAQ5VT25 1732 aa9.73□□□□□ -0.85
SPG11-221ENST00000560299 RICTORQ6R327 1708 aa9.73□□□□□ -0.85
SPG11-221ENST00000560299 CDC42BPBQ9Y5S2 1711 aa9.73□□□□□ -0.85
SPG11-221ENST00000560299 MYOM3Q5VTT5 1437 aa9.73□□□□□ -0.85
SPG11-221ENST00000560299 RRBP1Q9P2E9 1410 aaKnown RBP9.73□□□□□ -0.85
SPG11-221ENST00000560299 MLH3Q9UHC1 1453 aa9.72□□□□□ -0.85
SPG11-221ENST00000560299 ITSN2Q9NZM3 1697 aa9.72□□□□□ -0.85
SPG11-221ENST00000560299 ABCC1P33527 1531 aa9.72□□□□□ -0.85
SPG11-221ENST00000560299 ARHGAP5Q13017 1502 aa9.72□□□□□ -0.85
SPG11-221ENST00000560299 FAM50AQ14320 339 aaKnown RBP9.71□□□□□ -0.86
SPG11-221ENST00000560299 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP9.71□□□□□ -0.86
SPG11-221ENST00000560299 SCAPERQ9BY12 1400 aa9.71□□□□□ -0.86
SPG11-221ENST00000560299 FRMPD1Q5SYB0 1578 aa9.71□□□□□ -0.86
SPG11-221ENST00000560299 REREQ9P2R6 1566 aa9.71□□□□□ -0.86
SPG11-221ENST00000560299 CFDP1Q9UEE9 299 aaPredicted RBP9.7□□□□□ -0.86
SPG11-221ENST00000560299 FGD6Q6ZV73 1430 aa9.7□□□□□ -0.86
SPG11-221ENST00000560299 DSG3P32926 999 aa9.69□□□□□ -0.86
SPG11-221ENST00000560299 RTEL1-TNFRSF6BF6WH68 1400 aa9.68□□□□□ -0.86
SPG11-221ENST00000560299 CAPN15O75808 1086 aa9.68□□□□□ -0.86
SPG11-221ENST00000560299 ARHGEF40Q8TER5 1519 aa9.67□□□□□ -0.86
SPG11-221ENST00000560299 MBD5Q9P267 1494 aa9.67□□□□□ -0.86
SPG11-221ENST00000560299 ARHGEF5Q12774 1597 aa9.67□□□□□ -0.86
SPG11-221ENST00000560299 SAMD9LQ8IVG5 1584 aa9.67□□□□□ -0.86
SPG11-221ENST00000560299 RAPGEF3O95398 923 aa9.66□□□□□ -0.86
SPG11-221ENST00000560299 PTPN23Q9H3S7 1636 aa9.66□□□□□ -0.86
SPG11-221ENST00000560299 AGLP35573 1532 aa9.66□□□□□ -0.86
SPG11-221ENST00000560299 ARHGEF12Q9NZN5 1544 aa9.66□□□□□ -0.86
SPG11-221ENST00000560299 ZNF777Q9ULD5 760 aaPredicted RBP9.65□□□□□ -0.86
SPG11-221ENST00000560299 ZFYVE16Q7Z3T8 1539 aa9.65□□□□□ -0.86
SPG11-221ENST00000560299 ATP10AO60312 1499 aa9.65□□□□□ -0.87
SPG11-221ENST00000560299 HECW2Q9P2P5 1572 aa9.64□□□□□ -0.87
SPG11-221ENST00000560299 ITGAEP38570 1179 aa9.64□□□□□ -0.87
SPG11-221ENST00000560299 TCOF1Q13428 1488 aaKnown RBP9.64□□□□□ -0.87
SPG11-221ENST00000560299 SPINK5Q9NQ38 1064 aaPredicted RBP9.63□□□□□ -0.87
SPG11-221ENST00000560299 C9orf84Q5VXU9 1444 aa9.63□□□□□ -0.87
SPG11-221ENST00000560299 TRAPPC8Q9Y2L5 1435 aa9.63□□□□□ -0.87
SPG11-221ENST00000560299 CCDC141Q6ZP82 1450 aa9.62□□□□□ -0.87
SPG11-221ENST00000560299 U3KPZ7 1027 aaPredicted RBP9.62□□□□□ -0.87
SPG11-221ENST00000560299 INO80Q9ULG1 1556 aaPredicted RBP9.62□□□□□ -0.87
SPG11-221ENST00000560299 MAST1Q9Y2H9 1570 aa9.62□□□□□ -0.87
SPG11-221ENST00000560299 SYCP2Q9BX26 1530 aa9.61□□□□□ -0.87
SPG11-221ENST00000560299 CAMSAP2Q08AD1 1489 aa9.61□□□□□ -0.87
SPG11-221ENST00000560299 SHANK2Q9UPX8 1470 aa9.61□□□□□ -0.87
SPG11-221ENST00000560299 AFAP1Q8N556 730 aa9.61□□□□□ -0.87
SPG11-221ENST00000560299 FAM135AQ9P2D6 1515 aa9.61□□□□□ -0.87
SPG11-221ENST00000560299 TSPY4P0CV99 314 aa9.6□□□□□ -0.87
SPG11-221ENST00000560299 TSPY10P0CW01 314 aa9.6□□□□□ -0.87
SPG11-221ENST00000560299 KIDINS220Q9ULH0 1771 aa9.6□□□□□ -0.87
SPG11-221ENST00000560299 SPAG9O60271 1321 aaKnown RBP9.59□□□□□ -0.87
SPG11-221ENST00000560299 ZNF644Q9H582 1327 aaPredicted RBP9.59□□□□□ -0.87
SPG11-221ENST00000560299 PLXNC1O60486 1568 aa9.59□□□□□ -0.87
SPG11-221ENST00000560299 DIP2CQ9Y2E4 1556 aa9.59□□□□□ -0.87
SPG11-221ENST00000560299 YEATS2Q9ULM3 1422 aa9.59□□□□□ -0.87
SPG11-221ENST00000560299 ATP7AQ04656 1500 aa9.59□□□□□ -0.87
SPG11-221ENST00000560299 BCORL1Q5H9F3 1711 aa9.59□□□□□ -0.87
SPG11-221ENST00000560299 ADAMTSL3P82987 1691 aa9.58□□□□□ -0.88
SPG11-221ENST00000560299 KDM4FA0A1W2PPD8 638 aa9.58□□□□□ -0.88
SPG11-221ENST00000560299 ACIN1Q9UKV3 1341 aaKnown RBP9.57□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 11.9 ms