RNA–Protein interactions for RNA: ENST00000559774.6

LRRC28-215, Transcript of leucine rich repeat containing 28, humanhuman

TSL 2

Gene LRRC28, Length 624 nt, Biotype processed transcript, Subcellular localisation Cytosol, Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LRRC28-215ENST00000559774 FANCAO15360 1455 aa13.39□□□□□ -0.27
LRRC28-215ENST00000559774 PREX2Q70Z35 1606 aa13.38□□□□□ -0.27
LRRC28-215ENST00000559774 CFAP74Q9C0B2 1584 aa13.37□□□□□ -0.27
LRRC28-215ENST00000559774 PLEKHH2Q8IVE3 1493 aa13.37□□□□□ -0.27
LRRC28-215ENST00000559774 MYO5CQ9NQX4 1742 aa13.37□□□□□ -0.27
LRRC28-215ENST00000559774 ARHGAP5Q13017 1502 aa13.37□□□□□ -0.27
LRRC28-215ENST00000559774 KIAA1107Q9UPP5 1409 aa13.37□□□□□ -0.27
LRRC28-215ENST00000559774 ITSN2Q9NZM3 1697 aa13.37□□□□□ -0.27
LRRC28-215ENST00000559774 RSPH4AQ5TD94 716 aa13.36□□□□□ -0.27
LRRC28-215ENST00000559774 AKNAQ7Z591 1439 aa13.36□□□□□ -0.27
LRRC28-215ENST00000559774 PPRC1Q5VV67 1664 aaKnown RBP13.34□□□□□ -0.27
LRRC28-215ENST00000559774 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP13.34□□□□□ -0.27
LRRC28-215ENST00000559774 CDC42BPAQ5VT25 1732 aa13.34□□□□□ -0.27
LRRC28-215ENST00000559774 FGD6Q6ZV73 1430 aa13.34□□□□□ -0.27
LRRC28-215ENST00000559774 CDC42BPBQ9Y5S2 1711 aa13.33□□□□□ -0.28
LRRC28-215ENST00000559774 TCOF1Q13428 1488 aaKnown RBP13.32□□□□□ -0.28
LRRC28-215ENST00000559774 ADGRL1O94910 1474 aa13.31□□□□□ -0.28
LRRC28-215ENST00000559774 PPARGC1BQ86YN6 1023 aaKnown RBP13.31□□□□□ -0.28
LRRC28-215ENST00000559774 ZNF777Q9ULD5 760 aaPredicted RBP13.31□□□□□ -0.28
LRRC28-215ENST00000559774 SCAPERQ9BY12 1400 aa13.3□□□□□ -0.28
LRRC28-215ENST00000559774 RRBP1Q9P2E9 1410 aaKnown RBP13.3□□□□□ -0.28
LRRC28-215ENST00000559774 DENND4BO75064 1496 aaPredicted RBP13.3□□□□□ -0.28
LRRC28-215ENST00000559774 PHF23Q9BUL5 403 aaPredicted RBP13.29□□□□□ -0.28
LRRC28-215ENST00000559774 CAMSAP2Q08AD1 1489 aa13.29□□□□□ -0.28
LRRC28-215ENST00000559774 ABCC1P33527 1531 aa13.29□□□□□ -0.28
LRRC28-215ENST00000559774 SAMD9LQ8IVG5 1584 aa13.28□□□□□ -0.28
LRRC28-215ENST00000559774 ZNF644Q9H582 1327 aaPredicted RBP13.28□□□□□ -0.28
LRRC28-215ENST00000559774 ZNF518AQ6AHZ1 1483 aa13.28□□□□□ -0.28
LRRC28-215ENST00000559774 MBD5Q9P267 1494 aa13.28□□□□□ -0.28
LRRC28-215ENST00000559774 TSPOAP1O95153 1857 aa13.27□□□□□ -0.28
LRRC28-215ENST00000559774 POGZQ7Z3K3 1410 aa13.27□□□□□ -0.29
LRRC28-215ENST00000559774 HNRNPMP52272 730 aaKnown RBP eCLIP13.26□□□□□ -0.29
LRRC28-215ENST00000559774 PTPN23Q9H3S7 1636 aa13.26□□□□□ -0.29
LRRC28-215ENST00000559774 ARHGEF5Q12774 1597 aa13.25□□□□□ -0.29
LRRC28-215ENST00000559774 ARHGEF12Q9NZN5 1544 aa13.25□□□□□ -0.29
LRRC28-215ENST00000559774 MAGI2Q86UL8 1455 aa13.25□□□□□ -0.29
LRRC28-215ENST00000559774 COL17A1Q9UMD9 1497 aaPredicted RBP13.25□□□□□ -0.29
LRRC28-215ENST00000559774 TSPY4P0CV99 314 aa13.25□□□□□ -0.29
LRRC28-215ENST00000559774 TSPY10P0CW01 314 aa13.25□□□□□ -0.29
LRRC28-215ENST00000559774 SYCP2Q9BX26 1530 aa13.24□□□□□ -0.29
LRRC28-215ENST00000559774 CCDC141Q6ZP82 1450 aa13.24□□□□□ -0.29
LRRC28-215ENST00000559774 FAM50AQ14320 339 aaKnown RBP13.24□□□□□ -0.29
LRRC28-215ENST00000559774 KDM6BO15054 1643 aa13.24□□□□□ -0.29
LRRC28-215ENST00000559774 RTEL1-TNFRSF6BF6WH68 1400 aa13.23□□□□□ -0.29
LRRC28-215ENST00000559774 TRAPPC8Q9Y2L5 1435 aa13.23□□□□□ -0.29
LRRC28-215ENST00000559774 RAPGEF3O95398 923 aa13.23□□□□□ -0.29
LRRC28-215ENST00000559774 AFAP1Q8N556 730 aa13.23□□□□□ -0.29
LRRC28-215ENST00000559774 MLH3Q9UHC1 1453 aa13.23□□□□□ -0.29
LRRC28-215ENST00000559774 KDM5CP41229 1560 aa13.22□□□□□ -0.29
LRRC28-215ENST00000559774 ZMYM4Q5VZL5 1548 aa13.22□□□□□ -0.29
LRRC28-215ENST00000559774 SHANK2Q9UPX8 1470 aa13.21□□□□□ -0.3
LRRC28-215ENST00000559774 ABCC5O15440 1437 aa13.21□□□□□ -0.3
LRRC28-215ENST00000559774 SPAG9O60271 1321 aaKnown RBP13.2□□□□□ -0.3
LRRC28-215ENST00000559774 DAPK1P53355 1430 aa13.2□□□□□ -0.3
LRRC28-215ENST00000559774 DNMT1P26358 1616 aaKnown RBP13.19□□□□□ -0.3
LRRC28-215ENST00000559774 RICTORQ6R327 1708 aa13.19□□□□□ -0.3
LRRC28-215ENST00000559774 FRMPD1Q5SYB0 1578 aa13.18□□□□□ -0.3
LRRC28-215ENST00000559774 MAST1Q9Y2H9 1570 aa13.18□□□□□ -0.3
LRRC28-215ENST00000559774 ROCK1Q13464 1354 aa13.17□□□□□ -0.3
LRRC28-215ENST00000559774 C9orf84Q5VXU9 1444 aa13.16□□□□□ -0.3
LRRC28-215ENST00000559774 HECW2Q9P2P5 1572 aa13.15□□□□□ -0.3
LRRC28-215ENST00000559774 ANKRD30AQ9BXX3 1397 aa13.15□□□□□ -0.3
LRRC28-215ENST00000559774 ADGRL2O95490 1459 aa13.15□□□□□ -0.3
LRRC28-215ENST00000559774 ATP7AQ04656 1500 aa13.14□□□□□ -0.31
LRRC28-215ENST00000559774 ATP10AO60312 1499 aa13.14□□□□□ -0.31
LRRC28-215ENST00000559774 INO80Q9ULG1 1556 aaPredicted RBP13.14□□□□□ -0.31
LRRC28-215ENST00000559774 NCOA1Q15788 1441 aa13.13□□□□□ -0.31
LRRC28-215ENST00000559774 ZFYVE16Q7Z3T8 1539 aa13.13□□□□□ -0.31
LRRC28-215ENST00000559774 TRIM26Q12899 539 aaPredicted RBP13.13□□□□□ -0.31
LRRC28-215ENST00000559774 MYT1LQ9UL68 1186 aa13.13□□□□□ -0.31
LRRC28-215ENST00000559774 PTPRKQ15262 1439 aa13.12□□□□□ -0.31
LRRC28-215ENST00000559774 PLXNC1O60486 1568 aa13.11□□□□□ -0.31
LRRC28-215ENST00000559774 REREQ9P2R6 1566 aa13.11□□□□□ -0.31
LRRC28-215ENST00000559774 DHX29Q7Z478 1369 aaKnown RBP13.11□□□□□ -0.31
LRRC28-215ENST00000559774 ARHGEF40Q8TER5 1519 aa13.11□□□□□ -0.31
LRRC28-215ENST00000559774 YEATS2Q9ULM3 1422 aa13.11□□□□□ -0.31
LRRC28-215ENST00000559774 CROCC2H7BZ55 1655 aa13.11□□□□□ -0.31
LRRC28-215ENST00000559774 ACIN1Q9UKV3 1341 aaKnown RBP13.11□□□□□ -0.31
LRRC28-215ENST00000559774 KIDINS220Q9ULH0 1771 aa13.1□□□□□ -0.31
LRRC28-215ENST00000559774 KIF15Q9NS87 1388 aa13.09□□□□□ -0.31
LRRC28-215ENST00000559774 CHIC2Q9UKJ5 165 aa13.09□□□□□ -0.31
LRRC28-215ENST00000559774 A2MP01023 1474 aa13.09□□□□□ -0.31
LRRC28-215ENST00000559774 DUOX2Q9NRD8 1548 aa13.08□□□□□ -0.31
LRRC28-215ENST00000559774 DIP2CQ9Y2E4 1556 aa13.08□□□□□ -0.32
LRRC28-215ENST00000559774 ITGAEP38570 1179 aa13.08□□□□□ -0.32
LRRC28-215ENST00000559774 AGLP35573 1532 aa13.08□□□□□ -0.32
LRRC28-215ENST00000559774 HFM1A2PYH4 1435 aa13.07□□□□□ -0.32
LRRC28-215ENST00000559774 ERBINQ96RT1 1412 aa13.07□□□□□ -0.32
LRRC28-215ENST00000559774 RRP7BPQ9NSQ0 103 aa13.07□□□□□ -0.32
LRRC28-215ENST00000559774 PPP6R1Q9UPN7 881 aa13.07□□□□□ -0.32
LRRC28-215ENST00000559774 ABCA6Q8N139 1617 aa13.06□□□□□ -0.32
LRRC28-215ENST00000559774 ADGBQ8N7X0 1667 aa13.06□□□□□ -0.32
LRRC28-215ENST00000559774 ANKRD50Q9ULJ7 1429 aa13.05□□□□□ -0.32
LRRC28-215ENST00000559774 HRCP23327 699 aa13.04□□□□□ -0.32
LRRC28-215ENST00000559774 NAIPQ13075 1403 aa13.03□□□□□ -0.32
LRRC28-215ENST00000559774 EIF2AK4Q9P2K8 1649 aaKnown RBP13.02□□□□□ -0.33
LRRC28-215ENST00000559774 BCORL1Q5H9F3 1711 aa13□□□□□ -0.33
LRRC28-215ENST00000559774 SETD5Q9C0A6 1442 aa13□□□□□ -0.33
LRRC28-215ENST00000559774 ARID4BQ4LE39 1312 aaPredicted RBP13□□□□□ -0.33
LRRC28-215ENST00000559774 KIF3BO15066 747 aa13□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 50.5 ms