RNA–Protein interactions for RNA: ENST00000559694.5

CARMIL3-202, Transcript of capping protein regulator and myosin 1 linker 3, humanhuman

TSL 5

Gene CARMIL3, Length 4,319 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CARMIL3-202ENST00000559694 GRIN2AQ12879 1464 aa14.47□□□□□ -0.09
CARMIL3-202ENST00000559694 DAXXQ9UER7 740 aaPredicted RBP14.45□□□□□ -0.1
CARMIL3-202ENST00000559694 SAFB2Q14151 953 aaKnown RBP eCLIP14.42□□□□□ -0.1
CARMIL3-202ENST00000559694 PHLDB1Q86UU1 1377 aa14.41□□□□□ -0.1
CARMIL3-202ENST00000559694 STK26Q9P289 416 aa14.41□□□□□ -0.1
CARMIL3-202ENST00000559694 FAM9BQ8IZU0 186 aa14.4□□□□□ -0.1
CARMIL3-202ENST00000559694 NUTM2DQ5VT03 806 aaPredicted RBP14.4□□□□□ -0.1
CARMIL3-202ENST00000559694 UACAQ9BZF9 1416 aa14.4□□□□□ -0.1
CARMIL3-202ENST00000559694 LRRC9Q6ZRR7 1453 aa14.4□□□□□ -0.11
CARMIL3-202ENST00000559694 ZBTB7CA1YPR0 619 aa14.4□□□□□ -0.11
CARMIL3-202ENST00000559694 ANP32EQ9BTT0 268 aa14.4□□□□□ -0.11
CARMIL3-202ENST00000559694 SALL2Q9Y467 1007 aaPredicted RBP14.39□□□□□ -0.11
CARMIL3-202ENST00000559694 MYOM3Q5VTT5 1437 aa14.39□□□□□ -0.11
CARMIL3-202ENST00000559694 CDCA8Q53HL2 280 aa14.38□□□□□ -0.11
CARMIL3-202ENST00000559694 CUL7Q14999 1698 aa14.38□□□□□ -0.11
CARMIL3-202ENST00000559694 FGD6Q6ZV73 1430 aa14.37□□□□□ -0.11
CARMIL3-202ENST00000559694 EFCAB5A4FU69 1503 aa14.37□□□□□ -0.11
CARMIL3-202ENST00000559694 LMOD2Q6P5Q4 547 aa14.37□□□□□ -0.11
CARMIL3-202ENST00000559694 IQGAP2Q13576 1575 aa14.37□□□□□ -0.11
CARMIL3-202ENST00000559694 NCOA2Q15596 1464 aa14.36□□□□□ -0.11
CARMIL3-202ENST00000559694 RAPGEF3O95398 923 aa14.36□□□□□ -0.11
CARMIL3-202ENST00000559694 TIMELESSQ9UNS1 1208 aa14.36□□□□□ -0.11
CARMIL3-202ENST00000559694 FYCO1Q9BQS8 1478 aa14.35□□□□□ -0.11
CARMIL3-202ENST00000559694 PLB1Q6P1J6 1458 aa14.35□□□□□ -0.11
CARMIL3-202ENST00000559694 MRS2Q9HD23 443 aa14.34□□□□□ -0.11
CARMIL3-202ENST00000559694 TROQ12816 1431 aaPredicted RBP14.34□□□□□ -0.11
CARMIL3-202ENST00000559694 HAP1P54257 671 aaPredicted RBP14.33□□□□□ -0.11
CARMIL3-202ENST00000559694 L3MBTL2Q969R5 705 aa14.33□□□□□ -0.11
CARMIL3-202ENST00000559694 KIF15Q9NS87 1388 aa14.33□□□□□ -0.12
CARMIL3-202ENST00000559694 KNSTRNQ9Y448 316 aa14.32□□□□□ -0.12
CARMIL3-202ENST00000559694 EID1Q9Y6B2 187 aa14.32□□□□□ -0.12
CARMIL3-202ENST00000559694 ARHGAP5Q13017 1502 aa14.32□□□□□ -0.12
CARMIL3-202ENST00000559694 PPM1GO15355 546 aaPredicted RBP14.31□□□□□ -0.12
CARMIL3-202ENST00000559694 SRPK2P78362 688 aaKnown RBP14.31□□□□□ -0.12
CARMIL3-202ENST00000559694 HNRNPUQ00839 825 aaKnown RBP eCLIP14.31□□□□□ -0.12
CARMIL3-202ENST00000559694 KIF21AQ7Z4S6 1674 aa14.31□□□□□ -0.12
CARMIL3-202ENST00000559694 WDR43Q15061 677 aaKnown RBP eCLIP14.3□□□□□ -0.12
CARMIL3-202ENST00000559694 CANXP27824 592 aaKnown RBP14.28□□□□□ -0.12
CARMIL3-202ENST00000559694 RRBP1Q9P2E9 1410 aaKnown RBP14.28□□□□□ -0.12
CARMIL3-202ENST00000559694 MAP3K1Q13233 1512 aa14.28□□□□□ -0.12
CARMIL3-202ENST00000559694 TMF1P82094 1093 aa14.28□□□□□ -0.12
CARMIL3-202ENST00000559694 CDK13Q14004 1512 aaKnown RBP14.28□□□□□ -0.12
CARMIL3-202ENST00000559694 SCAPERQ9BY12 1400 aa14.27□□□□□ -0.12
CARMIL3-202ENST00000559694 EPRSP07814 1512 aaKnown RBP14.27□□□□□ -0.13
CARMIL3-202ENST00000559694 TIAM1Q13009 1591 aa14.26□□□□□ -0.13
CARMIL3-202ENST00000559694 A0A0G2JS52 829 aa14.26□□□□□ -0.13
CARMIL3-202ENST00000559694 SUPT16HQ9Y5B9 1047 aaKnown RBP14.26□□□□□ -0.13
CARMIL3-202ENST00000559694 TNNT2P45379 298 aaPredicted RBP14.26□□□□□ -0.13
CARMIL3-202ENST00000559694 ANKRD50Q9ULJ7 1429 aa14.25□□□□□ -0.13
CARMIL3-202ENST00000559694 HSPA5P11021 654 aaKnown RBP14.24□□□□□ -0.13
CARMIL3-202ENST00000559694 BCL11AQ9H165 835 aa14.24□□□□□ -0.13
CARMIL3-202ENST00000559694 CCDC144AA2RUR9 1427 aa14.24□□□□□ -0.13
CARMIL3-202ENST00000559694 WDR62O43379 1518 aa14.23□□□□□ -0.13
CARMIL3-202ENST00000559694 ROCK2O75116 1388 aaKnown RBP14.23□□□□□ -0.13
CARMIL3-202ENST00000559694 CD109Q6YHK3 1445 aa14.22□□□□□ -0.13
CARMIL3-202ENST00000559694 SOX12O15370 315 aa14.22□□□□□ -0.13
CARMIL3-202ENST00000559694 SENP3-EIF4A1A0A087X0R7 540 aa14.21□□□□□ -0.13
CARMIL3-202ENST00000559694 TRAK1Q9UPV9 953 aa14.21□□□□□ -0.13
CARMIL3-202ENST00000559694 HECW1Q76N89 1606 aa14.21□□□□□ -0.14
CARMIL3-202ENST00000559694 VGFO15240 615 aaPredicted RBP14.2□□□□□ -0.14
CARMIL3-202ENST00000559694 ANP32AP39687 249 aaKnown RBP14.2□□□□□ -0.14
CARMIL3-202ENST00000559694 CC2D1BQ5T0F9 858 aaKnown RBP14.2□□□□□ -0.14
CARMIL3-202ENST00000559694 DHX57Q6P158 1386 aaKnown RBP14.2□□□□□ -0.14
CARMIL3-202ENST00000559694 ARHGEF11O15085 1522 aa14.19□□□□□ -0.14
CARMIL3-202ENST00000559694 NUTM2FA1L443 756 aa14.19□□□□□ -0.14
CARMIL3-202ENST00000559694 CFAP53Q96M91 514 aa14.19□□□□□ -0.14
CARMIL3-202ENST00000559694 MIA2Q96PC5 1412 aa14.17□□□□□ -0.14
CARMIL3-202ENST00000559694 EHBP1L1Q8N3D4 1523 aa14.17□□□□□ -0.14
CARMIL3-202ENST00000559694 NBR1Q14596 966 aa14.17□□□□□ -0.14
CARMIL3-202ENST00000559694 PCF11O94913 1555 aaKnown RBP14.16□□□□□ -0.14
CARMIL3-202ENST00000559694 EIF4G3O43432 1585 aaKnown RBP14.16□□□□□ -0.14
CARMIL3-202ENST00000559694 CTTNBP2Q8WZ74 1663 aa14.16□□□□□ -0.14
CARMIL3-202ENST00000559694 C9orf84Q5VXU9 1444 aa14.15□□□□□ -0.14
CARMIL3-202ENST00000559694 AEBP2Q6ZN18 517 aaPredicted RBP14.15□□□□□ -0.14
CARMIL3-202ENST00000559694 ZBTB47Q9UFB7 747 aaPredicted RBP14.15□□□□□ -0.14
CARMIL3-202ENST00000559694 PAK3O75914 559 aaPredicted RBP14.14□□□□□ -0.15
CARMIL3-202ENST00000559694 PLEKHH2Q8IVE3 1493 aa14.14□□□□□ -0.15
CARMIL3-202ENST00000559694 IRX6P78412 446 aaPredicted RBP14.14□□□□□ -0.15
CARMIL3-202ENST00000559694 HDGFL2Q7Z4V5 671 aaPredicted RBP14.12□□□□□ -0.15
CARMIL3-202ENST00000559694 NPM2Q86SE8 214 aaKnown RBP14.11□□□□□ -0.15
CARMIL3-202ENST00000559694 NEUROD2Q15784 382 aa14.11□□□□□ -0.15
CARMIL3-202ENST00000559694 ST20-MTHFSA0A0A6YYL1 179 aa14.11□□□□□ -0.15
CARMIL3-202ENST00000559694 ABCA5Q8WWZ7 1642 aa14.1□□□□□ -0.15
CARMIL3-202ENST00000559694 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP14.1□□□□□ -0.15
CARMIL3-202ENST00000559694 ADAMTS12P58397 1594 aa14.1□□□□□ -0.15
CARMIL3-202ENST00000559694 U2SURPO15042 1029 aaKnown RBP14.1□□□□□ -0.15
CARMIL3-202ENST00000559694 NUDCQ9Y266 331 aa14.1□□□□□ -0.15
CARMIL3-202ENST00000559694 EIF5BO60841 1220 aaKnown RBP14.09□□□□□ -0.15
CARMIL3-202ENST00000559694 MORC1Q86VD1 984 aa14.09□□□□□ -0.15
CARMIL3-202ENST00000559694 ATP10BO94823 1461 aa14.09□□□□□ -0.15
CARMIL3-202ENST00000559694 NGDNQ8NEJ9 315 aaKnown RBP14.08□□□□□ -0.16
CARMIL3-202ENST00000559694 NUP160Q12769 1436 aa14.08□□□□□ -0.16
CARMIL3-202ENST00000559694 ASXL2Q76L83 1435 aa14.07□□□□□ -0.16
CARMIL3-202ENST00000559694 TSHZ2Q9NRE2 1034 aa14.06□□□□□ -0.16
CARMIL3-202ENST00000559694 DAPK1P53355 1430 aa14.06□□□□□ -0.16
CARMIL3-202ENST00000559694 EIF3AQ14152 1382 aaKnown RBP14.06□□□□□ -0.16
CARMIL3-202ENST00000559694 THOC2Q8NI27 1593 aaKnown RBP14.06□□□□□ -0.16
CARMIL3-202ENST00000559694 ADGRL1O94910 1474 aa14.06□□□□□ -0.16
CARMIL3-202ENST00000559694 ABCF1Q8NE71 845 aaKnown RBP eCLIP14.06□□□□□ -0.16
CARMIL3-202ENST00000559694 CFAP43Q8NDM7 1665 aa14.05□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms