RNA–Protein interactions for RNA: ENST00000558013.5

LDLR-207, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LDLR, Length 3,144 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-207ENST00000558013 GCC2Q8IWJ2 1684 aa17.98■□□□□ 0.47
LDLR-207ENST00000558013 SLC4A1APQ9BWU0 796 aaKnown RBP17.98■□□□□ 0.47
LDLR-207ENST00000558013 ZNF777Q9ULD5 760 aaPredicted RBP17.98■□□□□ 0.47
LDLR-207ENST00000558013 NUP153P49790 1475 aaKnown RBP17.98■□□□□ 0.47
LDLR-207ENST00000558013 DAPK1P53355 1430 aa17.98■□□□□ 0.47
LDLR-207ENST00000558013 CNGB1Q14028 1251 aaPredicted RBP17.96■□□□□ 0.47
LDLR-207ENST00000558013 PRG4Q92954 1404 aaPredicted RBP17.96■□□□□ 0.47
LDLR-207ENST00000558013 ANKRD30BQ9BXX2 1392 aa17.95■□□□□ 0.46
LDLR-207ENST00000558013 AKNAQ7Z591 1439 aa17.95■□□□□ 0.46
LDLR-207ENST00000558013 KIAA0586Q9BVV6 1533 aa17.94■□□□□ 0.46
LDLR-207ENST00000558013 KIAA0556O60303 1618 aa17.92■□□□□ 0.46
LDLR-207ENST00000558013 IFT140Q96RY7 1462 aa17.92■□□□□ 0.46
LDLR-207ENST00000558013 CFDP1Q9UEE9 299 aaPredicted RBP17.92■□□□□ 0.46
LDLR-207ENST00000558013 PLB1Q6P1J6 1458 aa17.91■□□□□ 0.46
LDLR-207ENST00000558013 CHMP7Q8WUX9 453 aaPredicted RBP17.91■□□□□ 0.46
LDLR-207ENST00000558013 ZNF326Q5BKZ1 582 aaKnown RBP17.9■□□□□ 0.46
LDLR-207ENST00000558013 FAM9BQ8IZU0 186 aa17.9■□□□□ 0.46
LDLR-207ENST00000558013 GRIN2AQ12879 1464 aa17.9■□□□□ 0.46
LDLR-207ENST00000558013 CDK11AQ9UQ88 783 aaPredicted RBP17.89■□□□□ 0.45
LDLR-207ENST00000558013 CCDC7Q96M83 1385 aa17.89■□□□□ 0.45
LDLR-207ENST00000558013 RPRD2Q5VT52 1461 aaKnown RBP17.88■□□□□ 0.45
LDLR-207ENST00000558013 ROCK1Q13464 1354 aa17.88■□□□□ 0.45
LDLR-207ENST00000558013 PRKRIP1Q9H875 184 aaPredicted RBP17.87■□□□□ 0.45
LDLR-207ENST00000558013 CNTLNQ9NXG0 1405 aa17.87■□□□□ 0.45
LDLR-207ENST00000558013 POLR3GLQ9BT43 218 aa17.86■□□□□ 0.45
LDLR-207ENST00000558013 RAPGEF6Q8TEU7 1601 aa17.86■□□□□ 0.45
LDLR-207ENST00000558013 TEX14Q8IWB6 1497 aa17.86■□□□□ 0.45
LDLR-207ENST00000558013 KIF7Q2M1P5 1343 aa17.86■□□□□ 0.45
LDLR-207ENST00000558013 DNMT1P26358 1616 aaKnown RBP17.85■□□□□ 0.45
LDLR-207ENST00000558013 NCOA1Q15788 1441 aa17.85■□□□□ 0.45
LDLR-207ENST00000558013 SENP3-EIF4A1A0A087X0R7 540 aa17.85■□□□□ 0.45
LDLR-207ENST00000558013 EIF4G3O43432 1585 aaKnown RBP17.85■□□□□ 0.45
LDLR-207ENST00000558013 MRS2Q9HD23 443 aa17.84■□□□□ 0.45
LDLR-207ENST00000558013 RBM19Q9Y4C8 960 aaKnown RBP17.83■□□□□ 0.44
LDLR-207ENST00000558013 JPH4Q96JJ6 628 aa17.83■□□□□ 0.44
LDLR-207ENST00000558013 PKD2Q13563 968 aa17.82■□□□□ 0.44
LDLR-207ENST00000558013 CAMSAP2Q08AD1 1489 aa17.82■□□□□ 0.44
LDLR-207ENST00000558013 TROQ12816 1431 aaPredicted RBP17.82■□□□□ 0.44
LDLR-207ENST00000558013 MYT1Q01538 1121 aa17.82■□□□□ 0.44
LDLR-207ENST00000558013 PZPP20742 1482 aa17.82■□□□□ 0.44
LDLR-207ENST00000558013 GPATCH8Q9UKJ3 1502 aaKnown RBP17.81■□□□□ 0.44
LDLR-207ENST00000558013 KIF14Q15058 1648 aa17.81■□□□□ 0.44
LDLR-207ENST00000558013 SPATA31E1Q6ZUB1 1445 aa17.8■□□□□ 0.44
LDLR-207ENST00000558013 ERCC6Q03468 1493 aa17.79■□□□□ 0.44
LDLR-207ENST00000558013 CEP170Q5SW79 1584 aa17.79■□□□□ 0.44
LDLR-207ENST00000558013 KDM2AQ9Y2K7 1162 aa17.73■□□□□ 0.43
LDLR-207ENST00000558013 PLEKHD1A6NEE1 506 aa17.72■□□□□ 0.43
LDLR-207ENST00000558013 HNRNPMP52272 730 aaKnown RBP eCLIP17.72■□□□□ 0.43
LDLR-207ENST00000558013 SYNJ2O15056 1496 aa17.72■□□□□ 0.43
LDLR-207ENST00000558013 ANP32EQ9BTT0 268 aa17.72■□□□□ 0.43
LDLR-207ENST00000558013 KIAA1107Q9UPP5 1409 aa17.71■□□□□ 0.43
LDLR-207ENST00000558013 ANKRD50Q9ULJ7 1429 aa17.71■□□□□ 0.43
LDLR-207ENST00000558013 NUP155O75694 1391 aa17.71■□□□□ 0.42
LDLR-207ENST00000558013 USP47Q96K76 1375 aa17.71■□□□□ 0.42
LDLR-207ENST00000558013 MAGI1Q96QZ7 1491 aaPredicted RBP17.7■□□□□ 0.42
LDLR-207ENST00000558013 ANKRD30AQ9BXX3 1397 aa17.7■□□□□ 0.42
LDLR-207ENST00000558013 CARMIL2Q6F5E8 1435 aa17.68■□□□□ 0.42
LDLR-207ENST00000558013 DHX29Q7Z478 1369 aaKnown RBP17.67■□□□□ 0.42
LDLR-207ENST00000558013 ATP10BO94823 1461 aa17.67■□□□□ 0.42
LDLR-207ENST00000558013 B4GALNT3Q6L9W6 998 aa17.66■□□□□ 0.42
LDLR-207ENST00000558013 BCORL1Q5H9F3 1711 aa17.66■□□□□ 0.42
LDLR-207ENST00000558013 MBD5Q9P267 1494 aa17.65■□□□□ 0.42
LDLR-207ENST00000558013 ZBED9Q6R2W3 1325 aa17.65■□□□□ 0.42
LDLR-207ENST00000558013 ADGRL2O95490 1459 aa17.64■□□□□ 0.42
LDLR-207ENST00000558013 NUP160Q12769 1436 aa17.64■□□□□ 0.41
LDLR-207ENST00000558013 TSPY4P0CV99 314 aa17.64■□□□□ 0.41
LDLR-207ENST00000558013 TSPY10P0CW01 314 aa17.64■□□□□ 0.41
LDLR-207ENST00000558013 CARD11Q9BXL7 1154 aa17.64■□□□□ 0.41
LDLR-207ENST00000558013 C9orf84Q5VXU9 1444 aa17.64■□□□□ 0.41
LDLR-207ENST00000558013 DCAF11Q8TEB1 546 aa17.63■□□□□ 0.41
LDLR-207ENST00000558013 ITSN2Q9NZM3 1697 aa17.63■□□□□ 0.41
LDLR-207ENST00000558013 MSH5O43196 834 aa17.63■□□□□ 0.41
LDLR-207ENST00000558013 ST20-MTHFSA0A0A6YYL1 179 aa17.62■□□□□ 0.41
LDLR-207ENST00000558013 ABCC10Q5T3U5 1492 aa17.61■□□□□ 0.41
LDLR-207ENST00000558013 ADGBQ8N7X0 1667 aa17.6■□□□□ 0.41
LDLR-207ENST00000558013 PPP4R2Q9NY27 417 aa17.59■□□□□ 0.41
LDLR-207ENST00000558013 KIF15Q9NS87 1388 aa17.59■□□□□ 0.41
LDLR-207ENST00000558013 CDC42BPAQ5VT25 1732 aa17.59■□□□□ 0.41
LDLR-207ENST00000558013 ADCY10Q96PN6 1610 aa17.59■□□□□ 0.41
LDLR-207ENST00000558013 CROCC2H7BZ55 1655 aa17.59■□□□□ 0.41
LDLR-207ENST00000558013 RGL3Q3MIN7 710 aa17.58■□□□□ 0.4
LDLR-207ENST00000558013 ABCA8O94911 1581 aa17.57■□□□□ 0.4
LDLR-207ENST00000558013 GRWD1Q9BQ67 446 aaKnown RBP eCLIP17.56■□□□□ 0.47e-10■■□□□ 13.2
LDLR-207ENST00000558013 KDM5CP41229 1560 aa17.55■□□□□ 0.4
LDLR-207ENST00000558013 PTPRGP23470 1445 aa17.54■□□□□ 0.4
LDLR-207ENST00000558013 PNISRQ8TF01 805 aaKnown RBP17.53■□□□□ 0.4
LDLR-207ENST00000558013 TMC1Q8TDI8 760 aa17.53■□□□□ 0.4
LDLR-207ENST00000558013 POLR1AO95602 1720 aaPredicted RBP17.53■□□□□ 0.4
LDLR-207ENST00000558013 NBPF1Q3BBV0 1214 aa17.52■□□□□ 0.4
LDLR-207ENST00000558013 SALL2Q9Y467 1007 aaPredicted RBP17.51■□□□□ 0.39
LDLR-207ENST00000558013 UHRF1BP1Q6BDS2 1440 aa17.51■□□□□ 0.39
LDLR-207ENST00000558013 RALGAPBQ86X10 1494 aa17.5■□□□□ 0.39
LDLR-207ENST00000558013 ROCK2O75116 1388 aaKnown RBP17.49■□□□□ 0.39
LDLR-207ENST00000558013 SHANK2Q9UPX8 1470 aa17.48■□□□□ 0.39
LDLR-207ENST00000558013 ERICH6BQ5W0A0 696 aa17.48■□□□□ 0.39
LDLR-207ENST00000558013 NUDCQ9Y266 331 aa17.47■□□□□ 0.39
LDLR-207ENST00000558013 SMG6Q86US8 1419 aaKnown RBP17.45■□□□□ 0.38
LDLR-207ENST00000558013 SAMD9LQ8IVG5 1584 aa17.45■□□□□ 0.38
LDLR-207ENST00000558013 ARID4BQ4LE39 1312 aaPredicted RBP17.45■□□□□ 0.38
LDLR-207ENST00000558013 FAM135AQ9P2D6 1515 aa17.43■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 12.9 ms