RNA–Protein interactions for RNA: ENST00000557005.1

SYNE2-223, Transcript of spectrin repeat containing nuclear envelope protein 2, human

TSL 2

Gene SYNE2, Length 5,804 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SYNE2-223	ENST00000557005	L1TD1	Q5T7N2	865 aa	Known RBP	6.46	□□□□□ -1.38
SYNE2-223	ENST00000557005	RRP1	P56182	461 aa	Known RBP	6.46	□□□□□ -1.38
SYNE2-223	ENST00000557005	IL27	Q8NEV9	243 aa		6.46	□□□□□ -1.38
SYNE2-223	ENST00000557005	HSP90AB1	P08238	724 aa	Known RBP	6.45	□□□□□ -1.38
SYNE2-223	ENST00000557005	FTSJ3	Q8IY81	847 aa	Known RBP	6.45	□□□□□ -1.38
SYNE2-223	ENST00000557005	CRBN	Q96SW2	442 aa		6.45	□□□□□ -1.38
SYNE2-223	ENST00000557005	SLK	Q9H2G2	1235 aa	Predicted RBP	6.45	□□□□□ -1.38
SYNE2-223	ENST00000557005	AKNA	Q7Z591	1439 aa		6.45	□□□□□ -1.38
SYNE2-223	ENST00000557005	TSPY4	P0CV99	314 aa		6.45	□□□□□ -1.38
SYNE2-223	ENST00000557005	TSPY10	P0CW01	314 aa		6.45	□□□□□ -1.38
SYNE2-223	ENST00000557005	CCDC146	Q8IYE0	955 aa		6.45	□□□□□ -1.38
SYNE2-223	ENST00000557005	ARID3A	Q99856	593 aa		6.45	□□□□□ -1.38
SYNE2-223	ENST00000557005	ATAD2B	Q9ULI0	1458 aa		6.44	□□□□□ -1.38
SYNE2-223	ENST00000557005	ERICH3	Q5RHP9	1530 aa		6.44	□□□□□ -1.38
SYNE2-223	ENST00000557005	PKD2	Q13563	968 aa		6.44	□□□□□ -1.38
SYNE2-223	ENST00000557005	GSE1	Q14687	1217 aa		6.44	□□□□□ -1.38
SYNE2-223	ENST00000557005	PRKRIP1	Q9H875	184 aa	Predicted RBP	6.44	□□□□□ -1.38
SYNE2-223	ENST00000557005	TIAM1	Q13009	1591 aa		6.44	□□□□□ -1.38
SYNE2-223	ENST00000557005	TOP2B	Q02880	1626 aa		6.44	□□□□□ -1.38
SYNE2-223	ENST00000557005	WASHC2A	Q641Q2	1341 aa		6.44	□□□□□ -1.38
SYNE2-223	ENST00000557005	KIF15	Q9NS87	1388 aa		6.43	□□□□□ -1.38
SYNE2-223	ENST00000557005	RALBP1	Q15311	655 aa		6.43	□□□□□ -1.38
SYNE2-223	ENST00000557005	HSCB	Q8IWL3	235 aa		6.42	□□□□□ -1.38
SYNE2-223	ENST00000557005	CUX1	P39880	1505 aa		6.42	□□□□□ -1.38
SYNE2-223	ENST00000557005	MYH16	Q9H6N6	1097 aa		6.42	□□□□□ -1.38
SYNE2-223	ENST00000557005	CCDC7	Q96M83	1385 aa		6.42	□□□□□ -1.38
SYNE2-223	ENST00000557005	PRKCSH	P14314	528 aa	Predicted RBP	6.42	□□□□□ -1.38
SYNE2-223	ENST00000557005	PCF11	O94913	1555 aa	Known RBP	6.42	□□□□□ -1.38
SYNE2-223	ENST00000557005	PRDM2	Q13029	1718 aa		6.42	□□□□□ -1.38
SYNE2-223	ENST00000557005	MYBBP1A	Q9BQG0	1328 aa	Known RBP	6.42	□□□□□ -1.38
SYNE2-223	ENST00000557005	CCDC184	Q52MB2	194 aa		6.42	□□□□□ -1.38
SYNE2-223	ENST00000557005	PTMA	P06454	111 aa	Known RBP	6.41	□□□□□ -1.38
SYNE2-223	ENST00000557005	TMF1	P82094	1093 aa		6.41	□□□□□ -1.38
SYNE2-223	ENST00000557005	FOXD4L1	Q9NU39	408 aa		6.41	□□□□□ -1.38
SYNE2-223	ENST00000557005	GOLGA6L22	H0YM25	854 aa		6.41	□□□□□ -1.38
SYNE2-223	ENST00000557005	CHMP7	Q8WUX9	453 aa	Predicted RBP	6.41	□□□□□ -1.38
SYNE2-223	ENST00000557005	FGD6	Q6ZV73	1430 aa		6.41	□□□□□ -1.38
SYNE2-223	ENST00000557005	GOLGA6L3	A6NEY3	463 aa		6.41	□□□□□ -1.38
SYNE2-223	ENST00000557005	BRPF3	Q9ULD4	1205 aa		6.41	□□□□□ -1.38
SYNE2-223	ENST00000557005	KIF7	Q2M1P5	1343 aa		6.4	□□□□□ -1.38
SYNE2-223	ENST00000557005	MFAP1	P55081	439 aa	Known RBP	6.4	□□□□□ -1.38
SYNE2-223	ENST00000557005	USP47	Q96K76	1375 aa		6.4	□□□□□ -1.38
SYNE2-223	ENST00000557005	MAPKBP1	O60336	1514 aa		6.4	□□□□□ -1.38
SYNE2-223	ENST00000557005	DNTTIP2	Q5QJE6	756 aa	Known RBP	6.4	□□□□□ -1.39
SYNE2-223	ENST00000557005	UACA	Q9BZF9	1416 aa		6.39	□□□□□ -1.39
SYNE2-223	ENST00000557005	RSPH6A	Q9H0K4	717 aa		6.39	□□□□□ -1.39
SYNE2-223	ENST00000557005	FGD5	Q6ZNL6	1462 aa		6.39	□□□□□ -1.39
SYNE2-223	ENST00000557005	MSN	P26038	577 aa	Known RBP	6.38	□□□□□ -1.39
SYNE2-223	ENST00000557005	USP35	Q9P2H5	1018 aa		6.38	□□□□□ -1.39
SYNE2-223	ENST00000557005	PLEKHD1	A6NEE1	506 aa		6.38	□□□□□ -1.39
SYNE2-223	ENST00000557005	FAM161A	Q3B820	660 aa		6.38	□□□□□ -1.39
SYNE2-223	ENST00000557005	NCOA2	Q15596	1464 aa		6.38	□□□□□ -1.39
SYNE2-223	ENST00000557005	RAD54L2	Q9Y4B4	1467 aa		6.37	□□□□□ -1.39
SYNE2-223	ENST00000557005	CASC1	Q6TDU7	716 aa		6.37	□□□□□ -1.39
SYNE2-223	ENST00000557005	FYCO1	Q9BQS8	1478 aa		6.37	□□□□□ -1.39
SYNE2-223	ENST00000557005	NFKBIB	Q15653	356 aa		6.37	□□□□□ -1.39
SYNE2-223	ENST00000557005	CENPQ	Q7L2Z9	268 aa	Predicted RBP	6.37	□□□□□ -1.39
SYNE2-223	ENST00000557005	CFAP53	Q96M91	514 aa		6.37	□□□□□ -1.39
SYNE2-223	ENST00000557005	NUP155	O75694	1391 aa		6.37	□□□□□ -1.39
SYNE2-223	ENST00000557005	SMG6	Q86US8	1419 aa	Known RBP	6.37	□□□□□ -1.39
SYNE2-223	ENST00000557005	AMER1	Q5JTC6	1135 aa	Predicted RBP	6.36	□□□□□ -1.39
SYNE2-223	ENST00000557005	MYOM3	Q5VTT5	1437 aa		6.36	□□□□□ -1.39
SYNE2-223	ENST00000557005	SUPT6H	Q7KZ85	1726 aa	Known RBP	6.36	□□□□□ -1.39
SYNE2-223	ENST00000557005	ITPRIP	Q8IWB1	547 aa		6.36	□□□□□ -1.39
SYNE2-223	ENST00000557005	CDCA8	Q53HL2	280 aa		6.36	□□□□□ -1.39
SYNE2-223	ENST00000557005	TDRD9	Q8NDG6	1382 aa	Known RBP	6.36	□□□□□ -1.39
SYNE2-223	ENST00000557005	UNC13A	Q9UPW8	1703 aa		6.36	□□□□□ -1.39
SYNE2-223	ENST00000557005	CASKIN1	Q8WXD9	1431 aa		6.36	□□□□□ -1.39
SYNE2-223	ENST00000557005	U2SURP	O15042	1029 aa	Known RBP	6.35	□□□□□ -1.39
SYNE2-223	ENST00000557005	STAG3	Q9UJ98	1225 aa		6.35	□□□□□ -1.39
SYNE2-223	ENST00000557005	MAPK8IP3	Q9UPT6	1336 aa		6.35	□□□□□ -1.39
SYNE2-223	ENST00000557005	PANK3	Q9H999	370 aa		6.35	□□□□□ -1.39
SYNE2-223	ENST00000557005	IGF1R	P08069	1367 aa		6.35	□□□□□ -1.39
SYNE2-223	ENST00000557005	ST20-MTHFS	A0A0A6YYL1	179 aa		6.35	□□□□□ -1.39
SYNE2-223	ENST00000557005	PLCB2	Q00722	1185 aa		6.35	□□□□□ -1.39
SYNE2-223	ENST00000557005	PNN	Q9H307	717 aa	Known RBP	6.35	□□□□□ -1.39
SYNE2-223	ENST00000557005	GOLGA2	Q08379	1002 aa		6.35	□□□□□ -1.39
SYNE2-223	ENST00000557005	SKAP1	Q86WV1	359 aa		6.35	□□□□□ -1.39
SYNE2-223	ENST00000557005	MORC1	Q86VD1	984 aa		6.34	□□□□□ -1.39
SYNE2-223	ENST00000557005	ANKRD30A	Q9BXX3	1397 aa		6.34	□□□□□ -1.39
SYNE2-223	ENST00000557005	RRP7A	Q9Y3A4	280 aa	Known RBP	6.34	□□□□□ -1.39
SYNE2-223	ENST00000557005	EHBP1L1	Q8N3D4	1523 aa		6.34	□□□□□ -1.39
SYNE2-223	ENST00000557005	HNRNPM	P52272	730 aa	Known RBP eCLIP	6.34	□□□□□ -1.39
SYNE2-223	ENST00000557005	VSIG10	Q8N0Z9	540 aa		6.34	□□□□□ -1.39
SYNE2-223	ENST00000557005	PMFBP1	Q8TBY8	1022 aa		6.34	□□□□□ -1.39
SYNE2-223	ENST00000557005	PTPN23	Q9H3S7	1636 aa		6.34	□□□□□ -1.39
SYNE2-223	ENST00000557005	CFTR	P13569	1480 aa		6.34	□□□□□ -1.4
SYNE2-223	ENST00000557005	PRX	Q9BXM0	1461 aa		6.34	□□□□□ -1.4
SYNE2-223	ENST00000557005	BIVM-ERCC5	R4GMW8	1640 aa		6.34	□□□□□ -1.4
SYNE2-223	ENST00000557005	HSP90AA2P	Q14568	343 aa	Predicted RBP	6.33	□□□□□ -1.4
SYNE2-223	ENST00000557005	MS4A1	P11836	297 aa		6.33	□□□□□ -1.4
SYNE2-223	ENST00000557005	PLPPR3	Q6T4P5	718 aa		6.33	□□□□□ -1.4
SYNE2-223	ENST00000557005	CDCA7L	Q96GN5	454 aa		6.33	□□□□□ -1.4
SYNE2-223	ENST00000557005	PDE3B	Q13370	1112 aa		6.33	□□□□□ -1.4
SYNE2-223	ENST00000557005	CENPJ	Q9HC77	1338 aa	Predicted RBP	6.33	□□□□□ -1.4
SYNE2-223	ENST00000557005	FANCD2	Q9BXW9	1451 aa		6.33	□□□□□ -1.4
SYNE2-223	ENST00000557005	NLRP13	Q86W25	1043 aa		6.33	□□□□□ -1.4
SYNE2-223	ENST00000557005	RWDD1	Q9H446	243 aa	Predicted RBP	6.33	□□□□□ -1.4
SYNE2-223	ENST00000557005	CLUAP1	Q96AJ1	413 aa		6.33	□□□□□ -1.4
SYNE2-223	ENST00000557005	GBP4	Q96PP9	640 aa		6.32	□□□□□ -1.4

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