RNA–Protein interactions for RNA: ENST00000557005.1

SYNE2-223, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 2

Gene SYNE2, Length 5,804 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-223ENST00000557005 L1TD1Q5T7N2 865 aaKnown RBP6.46□□□□□ -1.38
SYNE2-223ENST00000557005 RRP1P56182 461 aaKnown RBP6.46□□□□□ -1.38
SYNE2-223ENST00000557005 IL27Q8NEV9 243 aa6.46□□□□□ -1.38
SYNE2-223ENST00000557005 HSP90AB1P08238 724 aaKnown RBP6.45□□□□□ -1.38
SYNE2-223ENST00000557005 FTSJ3Q8IY81 847 aaKnown RBP6.45□□□□□ -1.38
SYNE2-223ENST00000557005 CRBNQ96SW2 442 aa6.45□□□□□ -1.38
SYNE2-223ENST00000557005 SLKQ9H2G2 1235 aaPredicted RBP6.45□□□□□ -1.38
SYNE2-223ENST00000557005 AKNAQ7Z591 1439 aa6.45□□□□□ -1.38
SYNE2-223ENST00000557005 TSPY4P0CV99 314 aa6.45□□□□□ -1.38
SYNE2-223ENST00000557005 TSPY10P0CW01 314 aa6.45□□□□□ -1.38
SYNE2-223ENST00000557005 CCDC146Q8IYE0 955 aa6.45□□□□□ -1.38
SYNE2-223ENST00000557005 ARID3AQ99856 593 aa6.45□□□□□ -1.38
SYNE2-223ENST00000557005 ATAD2BQ9ULI0 1458 aa6.44□□□□□ -1.38
SYNE2-223ENST00000557005 ERICH3Q5RHP9 1530 aa6.44□□□□□ -1.38
SYNE2-223ENST00000557005 PKD2Q13563 968 aa6.44□□□□□ -1.38
SYNE2-223ENST00000557005 GSE1Q14687 1217 aa6.44□□□□□ -1.38
SYNE2-223ENST00000557005 PRKRIP1Q9H875 184 aaPredicted RBP6.44□□□□□ -1.38
SYNE2-223ENST00000557005 TIAM1Q13009 1591 aa6.44□□□□□ -1.38
SYNE2-223ENST00000557005 TOP2BQ02880 1626 aa6.44□□□□□ -1.38
SYNE2-223ENST00000557005 WASHC2AQ641Q2 1341 aa6.44□□□□□ -1.38
SYNE2-223ENST00000557005 KIF15Q9NS87 1388 aa6.43□□□□□ -1.38
SYNE2-223ENST00000557005 RALBP1Q15311 655 aa6.43□□□□□ -1.38
SYNE2-223ENST00000557005 HSCBQ8IWL3 235 aa6.42□□□□□ -1.38
SYNE2-223ENST00000557005 CUX1P39880 1505 aa6.42□□□□□ -1.38
SYNE2-223ENST00000557005 MYH16Q9H6N6 1097 aa6.42□□□□□ -1.38
SYNE2-223ENST00000557005 CCDC7Q96M83 1385 aa6.42□□□□□ -1.38
SYNE2-223ENST00000557005 PRKCSHP14314 528 aaPredicted RBP6.42□□□□□ -1.38
SYNE2-223ENST00000557005 PCF11O94913 1555 aaKnown RBP6.42□□□□□ -1.38
SYNE2-223ENST00000557005 PRDM2Q13029 1718 aa6.42□□□□□ -1.38
SYNE2-223ENST00000557005 MYBBP1AQ9BQG0 1328 aaKnown RBP6.42□□□□□ -1.38
SYNE2-223ENST00000557005 CCDC184Q52MB2 194 aa6.42□□□□□ -1.38
SYNE2-223ENST00000557005 PTMAP06454 111 aaKnown RBP6.41□□□□□ -1.38
SYNE2-223ENST00000557005 TMF1P82094 1093 aa6.41□□□□□ -1.38
SYNE2-223ENST00000557005 FOXD4L1Q9NU39 408 aa6.41□□□□□ -1.38
SYNE2-223ENST00000557005 GOLGA6L22H0YM25 854 aa6.41□□□□□ -1.38
SYNE2-223ENST00000557005 CHMP7Q8WUX9 453 aaPredicted RBP6.41□□□□□ -1.38
SYNE2-223ENST00000557005 FGD6Q6ZV73 1430 aa6.41□□□□□ -1.38
SYNE2-223ENST00000557005 GOLGA6L3A6NEY3 463 aa6.41□□□□□ -1.38
SYNE2-223ENST00000557005 BRPF3Q9ULD4 1205 aa6.41□□□□□ -1.38
SYNE2-223ENST00000557005 KIF7Q2M1P5 1343 aa6.4□□□□□ -1.38
SYNE2-223ENST00000557005 MFAP1P55081 439 aaKnown RBP6.4□□□□□ -1.38
SYNE2-223ENST00000557005 USP47Q96K76 1375 aa6.4□□□□□ -1.38
SYNE2-223ENST00000557005 MAPKBP1O60336 1514 aa6.4□□□□□ -1.38
SYNE2-223ENST00000557005 DNTTIP2Q5QJE6 756 aaKnown RBP6.4□□□□□ -1.39
SYNE2-223ENST00000557005 UACAQ9BZF9 1416 aa6.39□□□□□ -1.39
SYNE2-223ENST00000557005 RSPH6AQ9H0K4 717 aa6.39□□□□□ -1.39
SYNE2-223ENST00000557005 FGD5Q6ZNL6 1462 aa6.39□□□□□ -1.39
SYNE2-223ENST00000557005 MSNP26038 577 aaKnown RBP6.38□□□□□ -1.39
SYNE2-223ENST00000557005 USP35Q9P2H5 1018 aa6.38□□□□□ -1.39
SYNE2-223ENST00000557005 PLEKHD1A6NEE1 506 aa6.38□□□□□ -1.39
SYNE2-223ENST00000557005 FAM161AQ3B820 660 aa6.38□□□□□ -1.39
SYNE2-223ENST00000557005 NCOA2Q15596 1464 aa6.38□□□□□ -1.39
SYNE2-223ENST00000557005 RAD54L2Q9Y4B4 1467 aa6.37□□□□□ -1.39
SYNE2-223ENST00000557005 CASC1Q6TDU7 716 aa6.37□□□□□ -1.39
SYNE2-223ENST00000557005 FYCO1Q9BQS8 1478 aa6.37□□□□□ -1.39
SYNE2-223ENST00000557005 NFKBIBQ15653 356 aa6.37□□□□□ -1.39
SYNE2-223ENST00000557005 CENPQQ7L2Z9 268 aaPredicted RBP6.37□□□□□ -1.39
SYNE2-223ENST00000557005 CFAP53Q96M91 514 aa6.37□□□□□ -1.39
SYNE2-223ENST00000557005 NUP155O75694 1391 aa6.37□□□□□ -1.39
SYNE2-223ENST00000557005 SMG6Q86US8 1419 aaKnown RBP6.37□□□□□ -1.39
SYNE2-223ENST00000557005 AMER1Q5JTC6 1135 aaPredicted RBP6.36□□□□□ -1.39
SYNE2-223ENST00000557005 MYOM3Q5VTT5 1437 aa6.36□□□□□ -1.39
SYNE2-223ENST00000557005 SUPT6HQ7KZ85 1726 aaKnown RBP6.36□□□□□ -1.39
SYNE2-223ENST00000557005 ITPRIPQ8IWB1 547 aa6.36□□□□□ -1.39
SYNE2-223ENST00000557005 CDCA8Q53HL2 280 aa6.36□□□□□ -1.39
SYNE2-223ENST00000557005 TDRD9Q8NDG6 1382 aaKnown RBP6.36□□□□□ -1.39
SYNE2-223ENST00000557005 UNC13AQ9UPW8 1703 aa6.36□□□□□ -1.39
SYNE2-223ENST00000557005 CASKIN1Q8WXD9 1431 aa6.36□□□□□ -1.39
SYNE2-223ENST00000557005 U2SURPO15042 1029 aaKnown RBP6.35□□□□□ -1.39
SYNE2-223ENST00000557005 STAG3Q9UJ98 1225 aa6.35□□□□□ -1.39
SYNE2-223ENST00000557005 MAPK8IP3Q9UPT6 1336 aa6.35□□□□□ -1.39
SYNE2-223ENST00000557005 PANK3Q9H999 370 aa6.35□□□□□ -1.39
SYNE2-223ENST00000557005 IGF1RP08069 1367 aa6.35□□□□□ -1.39
SYNE2-223ENST00000557005 ST20-MTHFSA0A0A6YYL1 179 aa6.35□□□□□ -1.39
SYNE2-223ENST00000557005 PLCB2Q00722 1185 aa6.35□□□□□ -1.39
SYNE2-223ENST00000557005 PNNQ9H307 717 aaKnown RBP6.35□□□□□ -1.39
SYNE2-223ENST00000557005 GOLGA2Q08379 1002 aa6.35□□□□□ -1.39
SYNE2-223ENST00000557005 SKAP1Q86WV1 359 aa6.35□□□□□ -1.39
SYNE2-223ENST00000557005 MORC1Q86VD1 984 aa6.34□□□□□ -1.39
SYNE2-223ENST00000557005 ANKRD30AQ9BXX3 1397 aa6.34□□□□□ -1.39
SYNE2-223ENST00000557005 RRP7AQ9Y3A4 280 aaKnown RBP6.34□□□□□ -1.39
SYNE2-223ENST00000557005 EHBP1L1Q8N3D4 1523 aa6.34□□□□□ -1.39
SYNE2-223ENST00000557005 HNRNPMP52272 730 aaKnown RBP eCLIP6.34□□□□□ -1.39
SYNE2-223ENST00000557005 VSIG10Q8N0Z9 540 aa6.34□□□□□ -1.39
SYNE2-223ENST00000557005 PMFBP1Q8TBY8 1022 aa6.34□□□□□ -1.39
SYNE2-223ENST00000557005 PTPN23Q9H3S7 1636 aa6.34□□□□□ -1.39
SYNE2-223ENST00000557005 CFTRP13569 1480 aa6.34□□□□□ -1.4
SYNE2-223ENST00000557005 PRXQ9BXM0 1461 aa6.34□□□□□ -1.4
SYNE2-223ENST00000557005 BIVM-ERCC5R4GMW8 1640 aa6.34□□□□□ -1.4
SYNE2-223ENST00000557005 HSP90AA2PQ14568 343 aaPredicted RBP6.33□□□□□ -1.4
SYNE2-223ENST00000557005 MS4A1P11836 297 aa6.33□□□□□ -1.4
SYNE2-223ENST00000557005 PLPPR3Q6T4P5 718 aa6.33□□□□□ -1.4
SYNE2-223ENST00000557005 CDCA7LQ96GN5 454 aa6.33□□□□□ -1.4
SYNE2-223ENST00000557005 PDE3BQ13370 1112 aa6.33□□□□□ -1.4
SYNE2-223ENST00000557005 CENPJQ9HC77 1338 aaPredicted RBP6.33□□□□□ -1.4
SYNE2-223ENST00000557005 FANCD2Q9BXW9 1451 aa6.33□□□□□ -1.4
SYNE2-223ENST00000557005 NLRP13Q86W25 1043 aa6.33□□□□□ -1.4
SYNE2-223ENST00000557005 RWDD1Q9H446 243 aaPredicted RBP6.33□□□□□ -1.4
SYNE2-223ENST00000557005 CLUAP1Q96AJ1 413 aa6.33□□□□□ -1.4
SYNE2-223ENST00000557005 GBP4Q96PP9 640 aa6.32□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 12.4 ms