RNA–Protein interactions for RNA: ENST00000556220.5

ATXN3-236, Transcript of ataxin 3, humanhuman

TSL 1 (best)

Gene ATXN3, Length 692 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATXN3-236ENST00000556220 GSE1Q14687 1217 aa12.74□□□□□ -0.37
ATXN3-236ENST00000556220 IFNL1Q8IU54 200 aa12.74□□□□□ -0.37
ATXN3-236ENST00000556220 PYGBP11216 843 aa12.71□□□□□ -0.37
ATXN3-236ENST00000556220 CUX1P39880 1505 aa12.71□□□□□ -0.38
ATXN3-236ENST00000556220 KDM4FA0A1W2PPD8 638 aa12.7□□□□□ -0.38
ATXN3-236ENST00000556220 OTUD5Q96G74 571 aa12.7□□□□□ -0.38
ATXN3-236ENST00000556220 ERCC6L2Q5T890 1561 aa12.69□□□□□ -0.38
ATXN3-236ENST00000556220 IFNLR1Q8IU57 520 aaPredicted RBP12.69□□□□□ -0.38
ATXN3-236ENST00000556220 FAM69CQ0P6D2 419 aa12.68□□□□□ -0.38
ATXN3-236ENST00000556220 SPOCK2Q92563 424 aa12.66□□□□□ -0.38
ATXN3-236ENST00000556220 NUP160Q12769 1436 aa12.65□□□□□ -0.38
ATXN3-236ENST00000556220 IER5LQ5T953 404 aa12.65□□□□□ -0.38
ATXN3-236ENST00000556220 TRIM35Q9UPQ4 493 aa12.65□□□□□ -0.38
ATXN3-236ENST00000556220 GRIN2AQ12879 1464 aa12.65□□□□□ -0.38
ATXN3-236ENST00000556220 ABCA10Q8WWZ4 1543 aa12.64□□□□□ -0.39
ATXN3-236ENST00000556220 MAMSTRQ6ZN01 415 aa12.64□□□□□ -0.39
ATXN3-236ENST00000556220 TMEM106CQ9BVX2 250 aa12.64□□□□□ -0.39
ATXN3-236ENST00000556220 CEP170Q5SW79 1584 aa12.64□□□□□ -0.39
ATXN3-236ENST00000556220 CHRM1P11229 460 aaPredicted RBP12.63□□□□□ -0.39
ATXN3-236ENST00000556220 POTEFA5A3E0 1075 aa12.61□□□□□ -0.39
ATXN3-236ENST00000556220 SEC24BO95487 1268 aa12.61□□□□□ -0.39
ATXN3-236ENST00000556220 POTEJP0CG39 1038 aa12.61□□□□□ -0.39
ATXN3-236ENST00000556220 JPH4Q96JJ6 628 aa12.61□□□□□ -0.39
ATXN3-236ENST00000556220 ABCC10Q5T3U5 1492 aa12.6□□□□□ -0.39
ATXN3-236ENST00000556220 PCDHB8Q9UN66 801 aa12.6□□□□□ -0.39
ATXN3-236ENST00000556220 PBRM1Q86U86 1689 aa12.6□□□□□ -0.39
ATXN3-236ENST00000556220 KIF13AQ9H1H9 1805 aa12.58□□□□□ -0.4
ATXN3-236ENST00000556220 ZNF467Q7Z7K2 595 aaPredicted RBP12.58□□□□□ -0.4
ATXN3-236ENST00000556220 PRG4Q92954 1404 aaPredicted RBP12.58□□□□□ -0.4
ATXN3-236ENST00000556220 ABCA5Q8WWZ7 1642 aa12.58□□□□□ -0.4
ATXN3-236ENST00000556220 FHAD1B1AJZ9 1412 aa12.57□□□□□ -0.4
ATXN3-236ENST00000556220 COLQQ9Y215 455 aaPredicted RBP12.57□□□□□ -0.4
ATXN3-236ENST00000556220 SHROOM2Q13796 1616 aa12.55□□□□□ -0.4
ATXN3-236ENST00000556220 SCUBE2Q9NQ36 999 aa12.55□□□□□ -0.4
ATXN3-236ENST00000556220 CIZ1Q9ULV3 898 aaPredicted RBP12.54□□□□□ -0.4
ATXN3-236ENST00000556220 WRNQ14191 1432 aaPredicted RBP eCLIP12.54□□□□□ -0.4
ATXN3-236ENST00000556220 ADAMTS12P58397 1594 aa12.52□□□□□ -0.41
ATXN3-236ENST00000556220 MAPKBP1O60336 1514 aa12.5□□□□□ -0.41
ATXN3-236ENST00000556220 PLCG2P16885 1265 aa12.48□□□□□ -0.41
ATXN3-236ENST00000556220 IRX5P78411 483 aaPredicted RBP12.47□□□□□ -0.41
ATXN3-236ENST00000556220 KDM6BO15054 1643 aa12.47□□□□□ -0.41
ATXN3-236ENST00000556220 DIP2BQ9P265 1576 aa12.47□□□□□ -0.41
ATXN3-236ENST00000556220 OCEL1Q9H607 264 aa12.45□□□□□ -0.42
ATXN3-236ENST00000556220 ERICH3Q5RHP9 1530 aa12.45□□□□□ -0.42
ATXN3-236ENST00000556220 PSEN1P49768 467 aa12.44□□□□□ -0.42
ATXN3-236ENST00000556220 PDAP1Q13442 181 aaKnown RBP12.42□□□□□ -0.42
ATXN3-236ENST00000556220 GOLGA2Q08379 1002 aa12.41□□□□□ -0.42
ATXN3-236ENST00000556220 ADCY10Q96PN6 1610 aa12.4□□□□□ -0.42
ATXN3-236ENST00000556220 ADGRL1O94910 1474 aa12.39□□□□□ -0.43
ATXN3-236ENST00000556220 MKRN3Q13064 507 aaKnown RBP12.38□□□□□ -0.43
ATXN3-236ENST00000556220 TSPOAP1O95153 1857 aa12.36□□□□□ -0.43
ATXN3-236ENST00000556220 PTPRGP23470 1445 aa12.36□□□□□ -0.43
ATXN3-236ENST00000556220 TOP2BQ02880 1626 aa12.35□□□□□ -0.43
ATXN3-236ENST00000556220 KIAA0586Q9BVV6 1533 aa12.34□□□□□ -0.43
ATXN3-236ENST00000556220 FBXO41Q8TF61 875 aa12.34□□□□□ -0.43
ATXN3-236ENST00000556220 RUSC2Q8N2Y8 1516 aa12.33□□□□□ -0.44
ATXN3-236ENST00000556220 COL17A1Q9UMD9 1497 aaPredicted RBP12.33□□□□□ -0.44
ATXN3-236ENST00000556220 HECW2Q9P2P5 1572 aa12.32□□□□□ -0.44
ATXN3-236ENST00000556220 PLB1Q6P1J6 1458 aa12.32□□□□□ -0.44
ATXN3-236ENST00000556220 TTBK1Q5TCY1 1321 aaPredicted RBP12.32□□□□□ -0.44
ATXN3-236ENST00000556220 ASXL2Q76L83 1435 aa12.31□□□□□ -0.44
ATXN3-236ENST00000556220 BIVM-ERCC5R4GMW8 1640 aa12.31□□□□□ -0.44
ATXN3-236ENST00000556220 PDCD7Q8N8D1 485 aaKnown RBP12.31□□□□□ -0.44
ATXN3-236ENST00000556220 SLAIN1Q8ND83 568 aa12.3□□□□□ -0.44
ATXN3-236ENST00000556220 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP12.3□□□□□ -0.443e-6■■□□□ 13.5
ATXN3-236ENST00000556220 IGF1RP08069 1367 aa12.3□□□□□ -0.44
ATXN3-236ENST00000556220 ABCC2Q92887 1545 aa12.29□□□□□ -0.44
ATXN3-236ENST00000556220 FAM163AQ96GL9 167 aaPredicted RBP12.29□□□□□ -0.44
ATXN3-236ENST00000556220 TNIKQ9UKE5 1360 aa12.29□□□□□ -0.44
ATXN3-236ENST00000556220 GLI2P10070 1586 aa12.28□□□□□ -0.44
ATXN3-236ENST00000556220 POTEMA6NI47 508 aa12.28□□□□□ -0.44
ATXN3-236ENST00000556220 SUPT5HO00267 1087 aaKnown RBP12.27□□□□□ -0.45
ATXN3-236ENST00000556220 POTEGQ6S5H5 508 aa12.27□□□□□ -0.45
ATXN3-236ENST00000556220 L3MBTL3Q96JM7 780 aaPredicted RBP12.27□□□□□ -0.45
ATXN3-236ENST00000556220 CABP2Q9NPB3 220 aa12.27□□□□□ -0.45
ATXN3-236ENST00000556220 EIF2AK3Q9NZJ5 1116 aaKnown RBP12.25□□□□□ -0.45
ATXN3-236ENST00000556220 PPRC1Q5VV67 1664 aaKnown RBP12.24□□□□□ -0.45
ATXN3-236ENST00000556220 CARMIL2Q6F5E8 1435 aa12.24□□□□□ -0.45
ATXN3-236ENST00000556220 RIOK3O14730 519 aaKnown RBP12.23□□□□□ -0.45
ATXN3-236ENST00000556220 LCE2DQ5TA82 110 aaPredicted RBP12.23□□□□□ -0.45
ATXN3-236ENST00000556220 EPRSP07814 1512 aaKnown RBP12.22□□□□□ -0.45
ATXN3-236ENST00000556220 UHRF1BP1LA0JNW5 1464 aa12.22□□□□□ -0.45
ATXN3-236ENST00000556220 UACAQ9BZF9 1416 aa12.22□□□□□ -0.45
ATXN3-236ENST00000556220 TEX14Q8IWB6 1497 aa12.21□□□□□ -0.45
ATXN3-236ENST00000556220 RNF25Q96BH1 459 aaPredicted RBP12.19□□□□□ -0.46
ATXN3-236ENST00000556220 KIF27Q86VH2 1401 aa12.19□□□□□ -0.46
ATXN3-236ENST00000556220 CARMIL1Q5VZK9 1371 aa12.18□□□□□ -0.46
ATXN3-236ENST00000556220 VGFO15240 615 aaPredicted RBP12.18□□□□□ -0.46
ATXN3-236ENST00000556220 C3orf67Q6ZVT6 689 aa12.18□□□□□ -0.46
ATXN3-236ENST00000556220 PCDH10Q9P2E7 1040 aa12.18□□□□□ -0.46
ATXN3-236ENST00000556220 KDM5BQ9UGL1 1544 aa12.16□□□□□ -0.46
ATXN3-236ENST00000556220 EFCAB3Q8N7B9 438 aa12.15□□□□□ -0.46
ATXN3-236ENST00000556220 SNPHO15079 494 aa12.14□□□□□ -0.47
ATXN3-236ENST00000556220 DPY19L2Q6NUT2 758 aa12.14□□□□□ -0.47
ATXN3-236ENST00000556220 TAOK2Q9UL54 1235 aa12.14□□□□□ -0.47
ATXN3-236ENST00000556220 MAP3K4Q9Y6R4 1608 aa12.14□□□□□ -0.47
ATXN3-236ENST00000556220 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP12.13□□□□□ -0.47
ATXN3-236ENST00000556220 ZFP91Q96JP5 570 aaPredicted RBP12.13□□□□□ -0.47
ATXN3-236ENST00000556220 CD109Q6YHK3 1445 aa12.11□□□□□ -0.47
ATXN3-236ENST00000556220 DISP1Q96F81 1524 aa12.11□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 87.6 ms