RNA–Protein interactions for RNA: ENST00000555890.5

SLIRP-204, Transcript of SRA stem-loop interacting RNA binding protein, humanhuman

TSL 2

Gene SLIRP, Length 471 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SLIRP-204ENST00000555890 BCORL1Q5H9F3 1711 aa11.26□□□□□ -0.61
SLIRP-204ENST00000555890 SENP3-EIF4A1A0A087X0R7 540 aa11.24□□□□□ -0.61
SLIRP-204ENST00000555890 MAP3K4Q9Y6R4 1608 aa11.24□□□□□ -0.61
SLIRP-204ENST00000555890 ZRANB1Q9UGI0 708 aa11.23□□□□□ -0.61
SLIRP-204ENST00000555890 RIMS1Q86UR5 1692 aaKnown RBP11.23□□□□□ -0.61
SLIRP-204ENST00000555890 FHAD1B1AJZ9 1412 aa11.22□□□□□ -0.61
SLIRP-204ENST00000555890 EPRSP07814 1512 aaKnown RBP11.22□□□□□ -0.61
SLIRP-204ENST00000555890 FBXO3Q9UK99 471 aa11.21□□□□□ -0.61
SLIRP-204ENST00000555890 SETD1AO15047 1707 aaKnown RBP11.21□□□□□ -0.62
SLIRP-204ENST00000555890 YY1P25490 414 aa11.2□□□□□ -0.62
SLIRP-204ENST00000555890 ZNF335Q9H4Z2 1342 aaPredicted RBP11.19□□□□□ -0.62
SLIRP-204ENST00000555890 ABCC2Q92887 1545 aa11.16□□□□□ -0.62
SLIRP-204ENST00000555890 AKT1S1Q96B36 256 aa11.14□□□□□ -0.63
SLIRP-204ENST00000555890 UHRF1BP1Q6BDS2 1440 aa11.13□□□□□ -0.63
SLIRP-204ENST00000555890 POLA2Q14181 598 aa11.13□□□□□ -0.63
SLIRP-204ENST00000555890 ERICH3Q5RHP9 1530 aa11.13□□□□□ -0.63
SLIRP-204ENST00000555890 HAX1O00165 279 aa11.12□□□□□ -0.63
SLIRP-204ENST00000555890 PLCB2Q00722 1185 aa11.12□□□□□ -0.63
SLIRP-204ENST00000555890 RUSC2Q8N2Y8 1516 aa11.12□□□□□ -0.63
SLIRP-204ENST00000555890 WRNQ14191 1432 aaPredicted RBP eCLIP11.11□□□□□ -0.63
SLIRP-204ENST00000555890 PREX1Q8TCU6 1659 aa11.11□□□□□ -0.63
SLIRP-204ENST00000555890 MAGI3Q5TCQ9 1506 aa11.1□□□□□ -0.63
SLIRP-204ENST00000555890 CD109Q6YHK3 1445 aa11.09□□□□□ -0.63
SLIRP-204ENST00000555890 POGZQ7Z3K3 1410 aa11.09□□□□□ -0.63
SLIRP-204ENST00000555890 PIP4P2Q8N4L2 257 aa11.07□□□□□ -0.64
SLIRP-204ENST00000555890 ARAP3Q8WWN8 1544 aa11.07□□□□□ -0.64
SLIRP-204ENST00000555890 SETBP1Q9Y6X0 1596 aa11.07□□□□□ -0.64
SLIRP-204ENST00000555890 SPDYE4A6NLX3 237 aa11.06□□□□□ -0.64
SLIRP-204ENST00000555890 TRIM52Q96A61 297 aa11.06□□□□□ -0.64
SLIRP-204ENST00000555890 PTPRGP23470 1445 aa11.06□□□□□ -0.64
SLIRP-204ENST00000555890 PTPRKQ15262 1439 aa11.03□□□□□ -0.64
SLIRP-204ENST00000555890 NCOA1Q15788 1441 aa11.03□□□□□ -0.64
SLIRP-204ENST00000555890 CEBPAP49715 358 aaPredicted RBP11.03□□□□□ -0.64
SLIRP-204ENST00000555890 BIVM-ERCC5R4GMW8 1640 aa11.02□□□□□ -0.64
SLIRP-204ENST00000555890 RAPGEF3O95398 923 aa11.02□□□□□ -0.65
SLIRP-204ENST00000555890 PROM2Q8N271 834 aa11□□□□□ -0.65
SLIRP-204ENST00000555890 TTBK1Q5TCY1 1321 aaPredicted RBP11□□□□□ -0.65
SLIRP-204ENST00000555890 VASPP50552 380 aaPredicted RBP10.99□□□□□ -0.65
SLIRP-204ENST00000555890 MLECQ14165 292 aa10.99□□□□□ -0.65
SLIRP-204ENST00000555890 TTC37Q6PGP7 1564 aa10.99□□□□□ -0.65
SLIRP-204ENST00000555890 REM2Q8IYK8 340 aaPredicted RBP10.98□□□□□ -0.65
SLIRP-204ENST00000555890 UHRF1BP1LA0JNW5 1464 aa10.98□□□□□ -0.65
SLIRP-204ENST00000555890 KIAA0556O60303 1618 aa10.98□□□□□ -0.65
SLIRP-204ENST00000555890 CUL7Q14999 1698 aa10.98□□□□□ -0.65
SLIRP-204ENST00000555890 PHLDB1Q86UU1 1377 aa10.96□□□□□ -0.65
SLIRP-204ENST00000555890 C1QTNF8P60827 252 aa10.96□□□□□ -0.65
SLIRP-204ENST00000555890 IGF1RP08069 1367 aa10.95□□□□□ -0.66
SLIRP-204ENST00000555890 TNIKQ9UKE5 1360 aa10.95□□□□□ -0.66
SLIRP-204ENST00000555890 HAP1P54257 671 aaPredicted RBP10.95□□□□□ -0.66
SLIRP-204ENST00000555890 FAM9AQ8IZU1 332 aaPredicted RBP10.95□□□□□ -0.66
SLIRP-204ENST00000555890 ZBTB12Q9Y330 459 aaPredicted RBP10.95□□□□□ -0.66
SLIRP-204ENST00000555890 KDM5BQ9UGL1 1544 aa10.94□□□□□ -0.66
SLIRP-204ENST00000555890 FANCAO15360 1455 aa10.94□□□□□ -0.66
SLIRP-204ENST00000555890 NCKAP5LQ9HCH0 1330 aa10.94□□□□□ -0.66
SLIRP-204ENST00000555890 LOC105371045A0A1W2PR82 267 aa10.94□□□□□ -0.66
SLIRP-204ENST00000555890 UACAQ9BZF9 1416 aa10.92□□□□□ -0.66
SLIRP-204ENST00000555890 MKRN4PQ13434 485 aaPredicted RBP10.92□□□□□ -0.66
SLIRP-204ENST00000555890 RXRBP28702 533 aa10.91□□□□□ -0.66
SLIRP-204ENST00000555890 FXR2P51116 673 aaKnown RBP eCLIP10.91□□□□□ -0.66
SLIRP-204ENST00000555890 BCANQ96GW7 911 aa10.91□□□□□ -0.66
SLIRP-204ENST00000555890 EEA1Q15075 1411 aa10.91□□□□□ -0.66
SLIRP-204ENST00000555890 ZNF772Q68DY9 489 aaPredicted RBP10.9□□□□□ -0.66
SLIRP-204ENST00000555890 IFNLR1Q8IU57 520 aaPredicted RBP10.9□□□□□ -0.66
SLIRP-204ENST00000555890 KCNH8Q96L42 1107 aa10.9□□□□□ -0.66
SLIRP-204ENST00000555890 CEP350Q5VT06 3117 aa10.9□□□□□ -0.66
SLIRP-204ENST00000555890 WDR7Q9Y4E6 1490 aa10.89□□□□□ -0.67
SLIRP-204ENST00000555890 PKD2Q13563 968 aa10.89□□□□□ -0.67
SLIRP-204ENST00000555890 ZCCHC11Q5TAX3 1644 aaKnown RBP10.88□□□□□ -0.67
SLIRP-204ENST00000555890 CPS1P31327 1500 aa10.88□□□□□ -0.67
SLIRP-204ENST00000555890 DISP1Q96F81 1524 aa10.88□□□□□ -0.67
SLIRP-204ENST00000555890 CARMIL2Q6F5E8 1435 aa10.86□□□□□ -0.67
SLIRP-204ENST00000555890 ALKQ9UM73 1620 aa10.86□□□□□ -0.67
SLIRP-204ENST00000555890 SETD1BQ9UPS6 1966 aaKnown RBP10.85□□□□□ -0.67
SLIRP-204ENST00000555890 LRP5O75197 1615 aa10.85□□□□□ -0.67
SLIRP-204ENST00000555890 PITPNM1O00562 1244 aa10.85□□□□□ -0.67
SLIRP-204ENST00000555890 VSIG10Q8N0Z9 540 aa10.85□□□□□ -0.67
SLIRP-204ENST00000555890 CDK12Q9NYV4 1490 aaPredicted RBP10.85□□□□□ -0.67
SLIRP-204ENST00000555890 AKNAQ7Z591 1439 aa10.84□□□□□ -0.67
SLIRP-204ENST00000555890 FER1L4A9Z1Z3 1794 aa10.84□□□□□ -0.67
SLIRP-204ENST00000555890 ARHGEF40Q8TER5 1519 aa10.83□□□□□ -0.68
SLIRP-204ENST00000555890 LRRC7Q96NW7 1537 aa10.82□□□□□ -0.68
SLIRP-204ENST00000555890 CAMSAP1Q5T5Y3 1602 aa10.81□□□□□ -0.68
SLIRP-204ENST00000555890 NUTM2BA6NNL0 878 aaPredicted RBP10.81□□□□□ -0.68
SLIRP-204ENST00000555890 NUTM2EB1AL46 878 aaPredicted RBP10.81□□□□□ -0.68
SLIRP-204ENST00000555890 NUTM2DQ5VT03 806 aaPredicted RBP10.81□□□□□ -0.68
SLIRP-204ENST00000555890 NUTM2AQ8IVF1 878 aaPredicted RBP10.81□□□□□ -0.68
SLIRP-204ENST00000555890 ZNF784Q8NCA9 323 aaPredicted RBP10.81□□□□□ -0.68
SLIRP-204ENST00000555890 CARMIL1Q5VZK9 1371 aa10.79□□□□□ -0.68
SLIRP-204ENST00000555890 IQGAP2Q13576 1575 aa10.79□□□□□ -0.68
SLIRP-204ENST00000555890 TRAPPC8Q9Y2L5 1435 aa10.79□□□□□ -0.68
SLIRP-204ENST00000555890 PRELPP51888 382 aa10.78□□□□□ -0.68
SLIRP-204ENST00000555890 EVX2Q03828 476 aa10.78□□□□□ -0.68
SLIRP-204ENST00000555890 ARHGEF12Q9NZN5 1544 aa10.78□□□□□ -0.68
SLIRP-204ENST00000555890 SHANK2Q9UPX8 1470 aa10.77□□□□□ -0.69
SLIRP-204ENST00000555890 KIF27Q86VH2 1401 aa10.75□□□□□ -0.69
SLIRP-204ENST00000555890 UGGT2Q9NYU1 1516 aa10.75□□□□□ -0.69
SLIRP-204ENST00000555890 LHX8Q68G74 356 aa10.75□□□□□ -0.69
SLIRP-204ENST00000555890 ATAD2Q6PL18 1390 aa10.75□□□□□ -0.69
SLIRP-204ENST00000555890 RAPGEF6Q8TEU7 1601 aa10.74□□□□□ -0.69
SLIRP-204ENST00000555890 CCDC125Q86Z20 511 aa10.74□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms