RNA–Protein interactions for RNA: ENST00000555046.1

TMEM260-206, Transcript of transmembrane protein 260, humanhuman

TSL 3

Gene TMEM260, Length 618 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM260-206ENST00000555046 CCDC18Q5T9S5 1454 aa16.68■□□□□ 0.26
TMEM260-206ENST00000555046 FYCO1Q9BQS8 1478 aa16.68■□□□□ 0.26
TMEM260-206ENST00000555046 HECW1Q76N89 1606 aa16.68■□□□□ 0.26
TMEM260-206ENST00000555046 PREX1Q8TCU6 1659 aa16.66■□□□□ 0.26
TMEM260-206ENST00000555046 IQSEC2Q5JU85 1478 aa16.66■□□□□ 0.26
TMEM260-206ENST00000555046 ARHGEF40Q8TER5 1519 aa16.65■□□□□ 0.26
TMEM260-206ENST00000555046 LTBP4Q8N2S1 1624 aa16.65■□□□□ 0.26
TMEM260-206ENST00000555046 PHLDB1Q86UU1 1377 aa16.64■□□□□ 0.25
TMEM260-206ENST00000555046 VPS8Q8N3P4 1428 aa16.63■□□□□ 0.25
TMEM260-206ENST00000555046 YEATS2Q9ULM3 1422 aa16.63■□□□□ 0.25
TMEM260-206ENST00000555046 TROQ12816 1431 aaPredicted RBP16.62■□□□□ 0.25
TMEM260-206ENST00000555046 FER1L4A9Z1Z3 1794 aa16.61■□□□□ 0.25
TMEM260-206ENST00000555046 CDK13Q14004 1512 aaKnown RBP16.61■□□□□ 0.25
TMEM260-206ENST00000555046 TTC37Q6PGP7 1564 aa16.61■□□□□ 0.25
TMEM260-206ENST00000555046 ARID4BQ4LE39 1312 aaPredicted RBP16.61■□□□□ 0.25
TMEM260-206ENST00000555046 SIGLEC1Q9BZZ2 1709 aa16.61■□□□□ 0.25
TMEM260-206ENST00000555046 PLPPR3Q6T4P5 718 aa16.6■□□□□ 0.25
TMEM260-206ENST00000555046 MTUS2Q5JR59 1369 aa16.59■□□□□ 0.25
TMEM260-206ENST00000555046 EFCAB2Q5VUJ9 269 aa16.58■□□□□ 0.24
TMEM260-206ENST00000555046 RAPGEF3O95398 923 aa16.54■□□□□ 0.24
TMEM260-206ENST00000555046 PLCH2O75038 1416 aa16.53■□□□□ 0.24
TMEM260-206ENST00000555046 DMRT2Q9Y5R5 561 aa16.52■□□□□ 0.24
TMEM260-206ENST00000555046 PTPRTO14522 1441 aa16.52■□□□□ 0.23
TMEM260-206ENST00000555046 ABCA9Q8IUA7 1624 aa16.51■□□□□ 0.23
TMEM260-206ENST00000555046 NEO1Q92859 1461 aa16.5■□□□□ 0.23
TMEM260-206ENST00000555046 MAP3K1Q13233 1512 aa16.5■□□□□ 0.23
TMEM260-206ENST00000555046 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP16.5■□□□□ 0.23
TMEM260-206ENST00000555046 FANCAO15360 1455 aa16.49■□□□□ 0.23
TMEM260-206ENST00000555046 RICTORQ6R327 1708 aa16.49■□□□□ 0.23
TMEM260-206ENST00000555046 CFDP1Q9UEE9 299 aaPredicted RBP16.49■□□□□ 0.23
TMEM260-206ENST00000555046 CCNB3Q8WWL7 1395 aa16.49■□□□□ 0.23
TMEM260-206ENST00000555046 AKNAQ7Z591 1439 aa16.46■□□□□ 0.23
TMEM260-206ENST00000555046 KIF14Q15058 1648 aa16.46■□□□□ 0.23
TMEM260-206ENST00000555046 POGZQ7Z3K3 1410 aa16.45■□□□□ 0.22
TMEM260-206ENST00000555046 KANK4Q5T7N3 995 aaPredicted RBP16.45■□□□□ 0.22
TMEM260-206ENST00000555046 ZNF777Q9ULD5 760 aaPredicted RBP16.43■□□□□ 0.22
TMEM260-206ENST00000555046 LRRC9Q6ZRR7 1453 aa16.42■□□□□ 0.22
TMEM260-206ENST00000555046 EHBP1L1Q8N3D4 1523 aa16.41■□□□□ 0.22
TMEM260-206ENST00000555046 RSPH4AQ5TD94 716 aa16.41■□□□□ 0.22
TMEM260-206ENST00000555046 DENND4BO75064 1496 aaPredicted RBP16.41■□□□□ 0.22
TMEM260-206ENST00000555046 ARHGEF12Q9NZN5 1544 aa16.4■□□□□ 0.22
TMEM260-206ENST00000555046 TIAM1Q13009 1591 aa16.4■□□□□ 0.22
TMEM260-206ENST00000555046 UHRF1BP1Q6BDS2 1440 aa16.4■□□□□ 0.22
TMEM260-206ENST00000555046 SCAPERQ9BY12 1400 aa16.4■□□□□ 0.22
TMEM260-206ENST00000555046 UBAP1LF5GYI3 381 aa16.4■□□□□ 0.22
TMEM260-206ENST00000555046 SETD1BQ9UPS6 1966 aaKnown RBP16.4■□□□□ 0.22
TMEM260-206ENST00000555046 GPATCH8Q9UKJ3 1502 aaKnown RBP16.4■□□□□ 0.22
TMEM260-206ENST00000555046 ARHGAP5Q13017 1502 aa16.39■□□□□ 0.21
TMEM260-206ENST00000555046 ZMYM4Q5VZL5 1548 aa16.39■□□□□ 0.21
TMEM260-206ENST00000555046 ZFYVE16Q7Z3T8 1539 aa16.37■□□□□ 0.21
TMEM260-206ENST00000555046 MYT1LQ9UL68 1186 aa16.37■□□□□ 0.21
TMEM260-206ENST00000555046 LRRIQ1Q96JM4 1722 aa16.36■□□□□ 0.21
TMEM260-206ENST00000555046 NCOA2Q15596 1464 aa16.35■□□□□ 0.21
TMEM260-206ENST00000555046 CFAP74Q9C0B2 1584 aa16.35■□□□□ 0.21
TMEM260-206ENST00000555046 AFAP1Q8N556 730 aa16.35■□□□□ 0.21
TMEM260-206ENST00000555046 KIAA1107Q9UPP5 1409 aa16.35■□□□□ 0.21
TMEM260-206ENST00000555046 PLEKHH2Q8IVE3 1493 aa16.35■□□□□ 0.21
TMEM260-206ENST00000555046 HSPA1LP34931 641 aa16.33■□□□□ 0.2
TMEM260-206ENST00000555046 HNRNPMP52272 730 aaKnown RBP eCLIP16.33■□□□□ 0.2
TMEM260-206ENST00000555046 MLECQ14165 292 aa16.32■□□□□ 0.2
TMEM260-206ENST00000555046 NCOA1Q15788 1441 aa16.32■□□□□ 0.2
TMEM260-206ENST00000555046 TSPY4P0CV99 314 aa16.31■□□□□ 0.2
TMEM260-206ENST00000555046 TSPY10P0CW01 314 aa16.31■□□□□ 0.2
TMEM260-206ENST00000555046 MAGI2Q86UL8 1455 aa16.3■□□□□ 0.2
TMEM260-206ENST00000555046 MIA2Q96PC5 1412 aa16.3■□□□□ 0.2
TMEM260-206ENST00000555046 CEBPAP49715 358 aaPredicted RBP16.3■□□□□ 0.2
TMEM260-206ENST00000555046 SUPT6HQ7KZ85 1726 aaKnown RBP16.3■□□□□ 0.2
TMEM260-206ENST00000555046 MYO5CQ9NQX4 1742 aa16.3■□□□□ 0.2
TMEM260-206ENST00000555046 ZNF518AQ6AHZ1 1483 aa16.29■□□□□ 0.2
TMEM260-206ENST00000555046 SPAG9O60271 1321 aaKnown RBP16.28■□□□□ 0.2
TMEM260-206ENST00000555046 ZNF644Q9H582 1327 aaPredicted RBP16.28■□□□□ 0.2
TMEM260-206ENST00000555046 SRCAPQ6ZRS2 3230 aa16.28■□□□□ 0.2
TMEM260-206ENST00000555046 MYOM3Q5VTT5 1437 aa16.28■□□□□ 0.2
TMEM260-206ENST00000555046 PIAS4Q8N2W9 510 aaPredicted RBP16.27■□□□□ 0.2
TMEM260-206ENST00000555046 C3P01024 1663 aa16.27■□□□□ 0.19
TMEM260-206ENST00000555046 ZNF335Q9H4Z2 1342 aaPredicted RBP16.26■□□□□ 0.19
TMEM260-206ENST00000555046 PREX2Q70Z35 1606 aa16.26■□□□□ 0.19
TMEM260-206ENST00000555046 TRAPPC8Q9Y2L5 1435 aa16.24■□□□□ 0.19
TMEM260-206ENST00000555046 CDC42BPBQ9Y5S2 1711 aa16.22■□□□□ 0.19
TMEM260-206ENST00000555046 MLH3Q9UHC1 1453 aa16.22■□□□□ 0.19
TMEM260-206ENST00000555046 PPARGC1BQ86YN6 1023 aaKnown RBP16.21■□□□□ 0.19
TMEM260-206ENST00000555046 ABCC1P33527 1531 aa16.2■□□□□ 0.18
TMEM260-206ENST00000555046 CAMSAP1Q5T5Y3 1602 aa16.2■□□□□ 0.18
TMEM260-206ENST00000555046 SETD1AO15047 1707 aaKnown RBP16.2■□□□□ 0.18
TMEM260-206ENST00000555046 CDC42BPAQ5VT25 1732 aa16.2■□□□□ 0.18
TMEM260-206ENST00000555046 ATP10AO60312 1499 aa16.2■□□□□ 0.18
TMEM260-206ENST00000555046 ITSN2Q9NZM3 1697 aa16.19■□□□□ 0.18
TMEM260-206ENST00000555046 MBD5Q9P267 1494 aa16.19■□□□□ 0.18
TMEM260-206ENST00000555046 FAM50AQ14320 339 aaKnown RBP16.19■□□□□ 0.18
TMEM260-206ENST00000555046 RTEL1-TNFRSF6BF6WH68 1400 aa16.19■□□□□ 0.18
TMEM260-206ENST00000555046 SCAF1Q9H7N4 1312 aaKnown RBP16.19■□□□□ 0.18
TMEM260-206ENST00000555046 FGD6Q6ZV73 1430 aa16.18■□□□□ 0.18
TMEM260-206ENST00000555046 C9orf84Q5VXU9 1444 aa16.17■□□□□ 0.18
TMEM260-206ENST00000555046 SAMD9LQ8IVG5 1584 aa16.17■□□□□ 0.18
TMEM260-206ENST00000555046 CAMSAP2Q08AD1 1489 aa16.16■□□□□ 0.18
TMEM260-206ENST00000555046 SYCP2Q9BX26 1530 aa16.16■□□□□ 0.18
TMEM260-206ENST00000555046 PIP4K2BP78356 416 aa16.16■□□□□ 0.18
TMEM260-206ENST00000555046 RGS17Q9UGC6 210 aaPredicted RBP16.16■□□□□ 0.18
TMEM260-206ENST00000555046 CCDC141Q6ZP82 1450 aa16.16■□□□□ 0.18
TMEM260-206ENST00000555046 ALKQ9UM73 1620 aa16.15■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 44.3 ms