RNA–Protein interactions for RNA: ENST00000554873.5

SYNE3-203, Transcript of spectrin repeat containing nuclear envelope family member 3, humanhuman

TSL 5 BASIC

Gene SYNE3, Length 2,826 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3-203ENST00000554873 MAGI3Q5TCQ9 1506 aa21.22■□□□□ 0.99
SYNE3-203ENST00000554873 ARHGEF11O15085 1522 aa21.22■□□□□ 0.99
SYNE3-203ENST00000554873 EIF5BO60841 1220 aaKnown RBP21.22■□□□□ 0.99
SYNE3-203ENST00000554873 DENND4BO75064 1496 aaPredicted RBP21.21■□□□□ 0.99
SYNE3-203ENST00000554873 TCOF1Q13428 1488 aaKnown RBP21.17■□□□□ 0.98
SYNE3-203ENST00000554873 LAMC3Q9Y6N6 1575 aa21.17■□□□□ 0.98
SYNE3-203ENST00000554873 EIF4G2P78344 907 aaKnown RBP eCLIP21.15■□□□□ 0.98
SYNE3-203ENST00000554873 MPHOSPH9Q99550 1183 aa21.14■□□□□ 0.97
SYNE3-203ENST00000554873 KDM6BO15054 1643 aa21.13■□□□□ 0.97
SYNE3-203ENST00000554873 NEFMP07197 916 aa21.13■□□□□ 0.97
SYNE3-203ENST00000554873 L3MBTL2Q969R5 705 aa21.12■□□□□ 0.97
SYNE3-203ENST00000554873 GCC2Q8IWJ2 1684 aa21.12■□□□□ 0.97
SYNE3-203ENST00000554873 HECW1Q76N89 1606 aa21.11■□□□□ 0.97
SYNE3-203ENST00000554873 CCDC184Q52MB2 194 aa21.11■□□□□ 0.97
SYNE3-203ENST00000554873 AKNAQ7Z591 1439 aa21.1■□□□□ 0.97
SYNE3-203ENST00000554873 FOXD1Q16676 465 aa21.1■□□□□ 0.97
SYNE3-203ENST00000554873 KIF21AQ7Z4S6 1674 aa21.09■□□□□ 0.97
SYNE3-203ENST00000554873 BRPF3Q9ULD4 1205 aa21.08■□□□□ 0.96
SYNE3-203ENST00000554873 EPRSP07814 1512 aaKnown RBP21.07■□□□□ 0.96
SYNE3-203ENST00000554873 PDS5BQ9NTI5 1447 aa21.07■□□□□ 0.96
SYNE3-203ENST00000554873 CNTLNQ9NXG0 1405 aa21.07■□□□□ 0.96
SYNE3-203ENST00000554873 RSPH6AQ9H0K4 717 aa21.07■□□□□ 0.96
SYNE3-203ENST00000554873 MIA2Q96PC5 1412 aa21.06■□□□□ 0.96
SYNE3-203ENST00000554873 ARID3CA6NKF2 412 aa21.05■□□□□ 0.96
SYNE3-203ENST00000554873 PPM1GO15355 546 aaPredicted RBP21.04■□□□□ 0.96
SYNE3-203ENST00000554873 CDK13Q14004 1512 aaKnown RBP21.03■□□□□ 0.96
SYNE3-203ENST00000554873 PRKRIP1Q9H875 184 aaPredicted RBP21.03■□□□□ 0.96
SYNE3-203ENST00000554873 CCDC7Q96M83 1385 aa21.03■□□□□ 0.96
SYNE3-203ENST00000554873 NCOA1Q15788 1441 aa21.03■□□□□ 0.96
SYNE3-203ENST00000554873 TARBP1Q13395 1621 aaKnown RBP21.02■□□□□ 0.96
SYNE3-203ENST00000554873 NBPF8Q3BBV2 869 aa21.02■□□□□ 0.96
SYNE3-203ENST00000554873 DNAJC5BQ9UF47 199 aa21.01■□□□□ 0.95
SYNE3-203ENST00000554873 ZBED9Q6R2W3 1325 aa21.01■□□□□ 0.95
SYNE3-203ENST00000554873 LAS1LQ9Y4W2 734 aaKnown RBP21.01■□□□□ 0.95
SYNE3-203ENST00000554873 ANKRD30BQ9BXX2 1392 aa21■□□□□ 0.95
SYNE3-203ENST00000554873 FAM9BQ8IZU0 186 aa20.99■□□□□ 0.95
SYNE3-203ENST00000554873 IQGAP2Q13576 1575 aa20.99■□□□□ 0.95
SYNE3-203ENST00000554873 GSE1Q14687 1217 aa20.97■□□□□ 0.95
SYNE3-203ENST00000554873 MRS2Q9HD23 443 aa20.96■□□□□ 0.95
SYNE3-203ENST00000554873 GLIPR1L2Q4G1C9 344 aa20.96■□□□□ 0.95
SYNE3-203ENST00000554873 WDR62O43379 1518 aa20.96■□□□□ 0.95
SYNE3-203ENST00000554873 RPRD2Q5VT52 1461 aaKnown RBP20.95■□□□□ 0.94
SYNE3-203ENST00000554873 ROCK1Q13464 1354 aa20.94■□□□□ 0.94
SYNE3-203ENST00000554873 DAPK1P53355 1430 aa20.94■□□□□ 0.94
SYNE3-203ENST00000554873 ZNF644Q9H582 1327 aaPredicted RBP20.93■□□□□ 0.94
SYNE3-203ENST00000554873 KIF7Q2M1P5 1343 aa20.92■□□□□ 0.94
SYNE3-203ENST00000554873 PBRM1Q86U86 1689 aa20.92■□□□□ 0.94
SYNE3-203ENST00000554873 ABCC5O15440 1437 aa20.92■□□□□ 0.94
SYNE3-203ENST00000554873 TEX14Q8IWB6 1497 aa20.92■□□□□ 0.94
SYNE3-203ENST00000554873 SPATA31E1Q6ZUB1 1445 aa20.92■□□□□ 0.94
SYNE3-203ENST00000554873 SLC4A1APQ9BWU0 796 aaKnown RBP20.91■□□□□ 0.94
SYNE3-203ENST00000554873 FAM43AQ8N2R8 423 aa20.89■□□□□ 0.94
SYNE3-203ENST00000554873 ADAMTS12P58397 1594 aa20.89■□□□□ 0.93
SYNE3-203ENST00000554873 NPM2Q86SE8 214 aaKnown RBP20.89■□□□□ 0.93
SYNE3-203ENST00000554873 RNF123Q5XPI4 1314 aa20.87■□□□□ 0.93
SYNE3-203ENST00000554873 DNMT1P26358 1616 aaKnown RBP20.86■□□□□ 0.93
SYNE3-203ENST00000554873 SMG6Q86US8 1419 aaKnown RBP20.85■□□□□ 0.93
SYNE3-203ENST00000554873 TCERG1O14776 1098 aaKnown RBP20.81■□□□□ 0.92
SYNE3-203ENST00000554873 FRAT1Q92837 279 aaPredicted RBP20.81■□□□□ 0.92
SYNE3-203ENST00000554873 NUP153P49790 1475 aaKnown RBP20.8■□□□□ 0.92
SYNE3-203ENST00000554873 ZMYND15Q9H091 742 aa20.8■□□□□ 0.92
SYNE3-203ENST00000554873 POLR1AO95602 1720 aaPredicted RBP20.79■□□□□ 0.92
SYNE3-203ENST00000554873 DISP1Q96F81 1524 aa20.79■□□□□ 0.92
SYNE3-203ENST00000554873 PZPP20742 1482 aa20.79■□□□□ 0.92
SYNE3-203ENST00000554873 PDE4AP27815 886 aa20.77■□□□□ 0.92
SYNE3-203ENST00000554873 DHX29Q7Z478 1369 aaKnown RBP20.77■□□□□ 0.91
SYNE3-203ENST00000554873 NFKBIBQ15653 356 aa20.76■□□□□ 0.91
SYNE3-203ENST00000554873 NUDCQ9Y266 331 aa20.76■□□□□ 0.91
SYNE3-203ENST00000554873 KIAA0556O60303 1618 aa20.75■□□□□ 0.91
SYNE3-203ENST00000554873 KIAA0586Q9BVV6 1533 aa20.75■□□□□ 0.91
SYNE3-203ENST00000554873 CNGB1Q14028 1251 aaPredicted RBP20.75■□□□□ 0.91
SYNE3-203ENST00000554873 VSIG10Q8N0Z9 540 aa20.75■□□□□ 0.91
SYNE3-203ENST00000554873 DDRGK1Q96HY6 314 aa20.75■□□□□ 0.91
SYNE3-203ENST00000554873 BACH2Q9BYV9 841 aa20.74■□□□□ 0.91
SYNE3-203ENST00000554873 CFDP1Q9UEE9 299 aaPredicted RBP20.73■□□□□ 0.91
SYNE3-203ENST00000554873 PRG4Q92954 1404 aaPredicted RBP20.73■□□□□ 0.91
SYNE3-203ENST00000554873 ZNF608Q9ULD9 1512 aaPredicted RBP20.73■□□□□ 0.91
SYNE3-203ENST00000554873 POLR3GLQ9BT43 218 aa20.73■□□□□ 0.91
SYNE3-203ENST00000554873 RAPGEF6Q8TEU7 1601 aa20.72■□□□□ 0.91
SYNE3-203ENST00000554873 MS4A1P11836 297 aa20.72■□□□□ 0.91
SYNE3-203ENST00000554873 ZNF326Q5BKZ1 582 aaKnown RBP20.72■□□□□ 0.91
SYNE3-203ENST00000554873 MBD5Q9P267 1494 aa20.72■□□□□ 0.91
SYNE3-203ENST00000554873 USP47Q96K76 1375 aa20.72■□□□□ 0.91
SYNE3-203ENST00000554873 MRC2Q9UBG0 1479 aa20.71■□□□□ 0.91
SYNE3-203ENST00000554873 KIAA1107Q9UPP5 1409 aa20.71■□□□□ 0.91
SYNE3-203ENST00000554873 CAMSAP2Q08AD1 1489 aa20.7■□□□□ 0.9
SYNE3-203ENST00000554873 PKD2Q13563 968 aa20.7■□□□□ 0.9
SYNE3-203ENST00000554873 BCORL1Q5H9F3 1711 aa20.7■□□□□ 0.9
SYNE3-203ENST00000554873 PODXL2Q9NZ53 605 aa20.69■□□□□ 0.9
SYNE3-203ENST00000554873 ZNF777Q9ULD5 760 aaPredicted RBP20.69■□□□□ 0.9
SYNE3-203ENST00000554873 TROQ12816 1431 aaPredicted RBP20.69■□□□□ 0.9
SYNE3-203ENST00000554873 GPATCH8Q9UKJ3 1502 aaKnown RBP20.67■□□□□ 0.9
SYNE3-203ENST00000554873 ARID4BQ4LE39 1312 aaPredicted RBP20.65■□□□□ 0.9
SYNE3-203ENST00000554873 IFT140Q96RY7 1462 aa20.65■□□□□ 0.9
SYNE3-203ENST00000554873 ADGRL2O95490 1459 aa20.63■□□□□ 0.89
SYNE3-203ENST00000554873 PNISRQ8TF01 805 aaKnown RBP20.63■□□□□ 0.89
SYNE3-203ENST00000554873 SENP3-EIF4A1A0A087X0R7 540 aa20.63■□□□□ 0.89
SYNE3-203ENST00000554873 DCAF11Q8TEB1 546 aa20.63■□□□□ 0.89
SYNE3-203ENST00000554873 ADGBQ8N7X0 1667 aa20.62■□□□□ 0.89
SYNE3-203ENST00000554873 GRIN2AQ12879 1464 aa20.62■□□□□ 0.89
Retrieved 100 of 20,778 RNA–protein pairs in 51.6 ms