RNA–Protein interactions for RNA: ENST00000554660.1

VPS33B-204, Transcript of VPS33B, late endosome and lysosome associated, humanhuman

TSL 3

Gene VPS33B, Length 1,055 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33B-204ENST00000554660 SCAPERQ9BY12 1400 aa18.91■□□□□ 0.62
VPS33B-204ENST00000554660 PLCH2O75038 1416 aa18.9■□□□□ 0.62
VPS33B-204ENST00000554660 MYO5CQ9NQX4 1742 aa18.88■□□□□ 0.61
VPS33B-204ENST00000554660 KIF14Q15058 1648 aa18.87■□□□□ 0.61
VPS33B-204ENST00000554660 ARHGEF12Q9NZN5 1544 aa18.87■□□□□ 0.61
VPS33B-204ENST00000554660 EHMT2Q96KQ7 1210 aa18.86■□□□□ 0.61
VPS33B-204ENST00000554660 C9orf84Q5VXU9 1444 aa18.85■□□□□ 0.61
VPS33B-204ENST00000554660 ATP10AO60312 1499 aa18.84■□□□□ 0.61
VPS33B-204ENST00000554660 ATP1B4Q9UN42 357 aaPredicted RBP18.83■□□□□ 0.6
VPS33B-204ENST00000554660 PREX1Q8TCU6 1659 aa18.82■□□□□ 0.6
VPS33B-204ENST00000554660 ARHGAP35Q9NRY4 1499 aa18.82■□□□□ 0.6
VPS33B-204ENST00000554660 FMN1Q68DA7 1419 aa18.82■□□□□ 0.6
VPS33B-204ENST00000554660 ARHGAP5Q13017 1502 aa18.79■□□□□ 0.6
VPS33B-204ENST00000554660 ZNF518AQ6AHZ1 1483 aa18.79■□□□□ 0.6
VPS33B-204ENST00000554660 KDM5CP41229 1560 aa18.79■□□□□ 0.6
VPS33B-204ENST00000554660 EFCAB2Q5VUJ9 269 aa18.78■□□□□ 0.6
VPS33B-204ENST00000554660 CERKQ8TCT0 537 aa18.78■□□□□ 0.6
VPS33B-204ENST00000554660 LRRIQ1Q96JM4 1722 aa18.77■□□□□ 0.6
VPS33B-204ENST00000554660 CEBPAP49715 358 aaPredicted RBP18.77■□□□□ 0.6
VPS33B-204ENST00000554660 DIP2CQ9Y2E4 1556 aa18.76■□□□□ 0.59
VPS33B-204ENST00000554660 TROQ12816 1431 aaPredicted RBP18.76■□□□□ 0.59
VPS33B-204ENST00000554660 UBTFP17480 764 aaKnown RBP18.76■□□□□ 0.59
VPS33B-204ENST00000554660 ABCA6Q8N139 1617 aa18.74■□□□□ 0.59
VPS33B-204ENST00000554660 CLIP1P30622 1438 aa18.74■□□□□ 0.59
VPS33B-204ENST00000554660 AFAP1Q8N556 730 aa18.73■□□□□ 0.59
VPS33B-204ENST00000554660 CDK11AQ9UQ88 783 aaPredicted RBP18.73■□□□□ 0.59
VPS33B-204ENST00000554660 STRCQ7RTU9 1775 aa18.72■□□□□ 0.59
VPS33B-204ENST00000554660 UHRF1BP1Q6BDS2 1440 aa18.71■□□□□ 0.59
VPS33B-204ENST00000554660 REREQ9P2R6 1566 aa18.71■□□□□ 0.59
VPS33B-204ENST00000554660 CDC42BPBQ9Y5S2 1711 aa18.71■□□□□ 0.59
VPS33B-204ENST00000554660 MYT1LQ9UL68 1186 aa18.7■□□□□ 0.58
VPS33B-204ENST00000554660 PREX2Q70Z35 1606 aa18.7■□□□□ 0.58
VPS33B-204ENST00000554660 ABCC1P33527 1531 aa18.69■□□□□ 0.58
VPS33B-204ENST00000554660 C3P01024 1663 aa18.68■□□□□ 0.58
VPS33B-204ENST00000554660 ITSN2Q9NZM3 1697 aa18.67■□□□□ 0.58
VPS33B-204ENST00000554660 TRAPPC8Q9Y2L5 1435 aa18.66■□□□□ 0.58
VPS33B-204ENST00000554660 MLH3Q9UHC1 1453 aa18.66■□□□□ 0.58
VPS33B-204ENST00000554660 AGLP35573 1532 aa18.63■□□□□ 0.57
VPS33B-204ENST00000554660 KIDINS220Q9ULH0 1771 aa18.61■□□□□ 0.57
VPS33B-204ENST00000554660 CCDC18Q5T9S5 1454 aa18.61■□□□□ 0.57
VPS33B-204ENST00000554660 CDC42BPAQ5VT25 1732 aa18.6■□□□□ 0.57
VPS33B-204ENST00000554660 DMRT2Q9Y5R5 561 aa18.6■□□□□ 0.57
VPS33B-204ENST00000554660 CASKIN1Q8WXD9 1431 aa18.59■□□□□ 0.57
VPS33B-204ENST00000554660 DISP3Q9P2K9 1392 aa18.57■□□□□ 0.56
VPS33B-204ENST00000554660 ESF1Q9H501 851 aaKnown RBP18.57■□□□□ 0.56
VPS33B-204ENST00000554660 PTPRTO14522 1441 aa18.57■□□□□ 0.56
VPS33B-204ENST00000554660 SAMD9LQ8IVG5 1584 aa18.56■□□□□ 0.56
VPS33B-204ENST00000554660 SETD1BQ9UPS6 1966 aaKnown RBP18.56■□□□□ 0.56
VPS33B-204ENST00000554660 SYCP2Q9BX26 1530 aa18.55■□□□□ 0.56
VPS33B-204ENST00000554660 LTBP4Q8N2S1 1624 aa18.54■□□□□ 0.56
VPS33B-204ENST00000554660 CHIC1Q5VXU3 224 aa18.54■□□□□ 0.56
VPS33B-204ENST00000554660 NCOA1Q15788 1441 aa18.54■□□□□ 0.56
VPS33B-204ENST00000554660 CNTLNQ9NXG0 1405 aa18.54■□□□□ 0.56
VPS33B-204ENST00000554660 FYCO1Q9BQS8 1478 aa18.53■□□□□ 0.56
VPS33B-204ENST00000554660 ILDR2Q71H61 639 aa18.53■□□□□ 0.56
VPS33B-204ENST00000554660 SPATA31D1Q6ZQQ2 1576 aa18.52■□□□□ 0.56
VPS33B-204ENST00000554660 MROH2AA6NES4 1674 aa18.52■□□□□ 0.56
VPS33B-204ENST00000554660 ZNF777Q9ULD5 760 aaPredicted RBP18.51■□□□□ 0.55
VPS33B-204ENST00000554660 CAMSAP1Q5T5Y3 1602 aa18.51■□□□□ 0.55
VPS33B-204ENST00000554660 SUPT6HQ7KZ85 1726 aaKnown RBP18.5■□□□□ 0.55
VPS33B-204ENST00000554660 ATP7AQ04656 1500 aa18.49■□□□□ 0.55
VPS33B-204ENST00000554660 GPATCH8Q9UKJ3 1502 aaKnown RBP18.49■□□□□ 0.55
VPS33B-204ENST00000554660 INO80Q9ULG1 1556 aaPredicted RBP18.48■□□□□ 0.55
VPS33B-204ENST00000554660 NPATQ14207 1427 aa18.48■□□□□ 0.55
VPS33B-204ENST00000554660 CLTCQ00610 1675 aaKnown RBP18.47■□□□□ 0.55
VPS33B-204ENST00000554660 PLXNC1O60486 1568 aa18.47■□□□□ 0.55
VPS33B-204ENST00000554660 MYO3AQ8NEV4 1616 aa18.47■□□□□ 0.55
VPS33B-204ENST00000554660 SPAG9O60271 1321 aaKnown RBP18.46■□□□□ 0.55
VPS33B-204ENST00000554660 IQSEC2Q5JU85 1478 aa18.46■□□□□ 0.54
VPS33B-204ENST00000554660 ZNF142P52746 1687 aaPredicted RBP18.44■□□□□ 0.54
VPS33B-204ENST00000554660 ZMYM3Q14202 1370 aa18.44■□□□□ 0.54
VPS33B-204ENST00000554660 HNRNPMP52272 730 aaKnown RBP eCLIP18.44■□□□□ 0.54
VPS33B-204ENST00000554660 A2MP01023 1474 aa18.43■□□□□ 0.54
VPS33B-204ENST00000554660 CEP170BQ9Y4F5 1589 aaPredicted RBP18.42■□□□□ 0.54
VPS33B-204ENST00000554660 SOCS7O14512 581 aa18.41■□□□□ 0.54
VPS33B-204ENST00000554660 NCKAP5LQ9HCH0 1330 aa18.41■□□□□ 0.54
VPS33B-204ENST00000554660 PLEKHH2Q8IVE3 1493 aa18.4■□□□□ 0.54
VPS33B-204ENST00000554660 ZNF335Q9H4Z2 1342 aaPredicted RBP18.4■□□□□ 0.54
VPS33B-204ENST00000554660 KIAA1107Q9UPP5 1409 aa18.4■□□□□ 0.54
VPS33B-204ENST00000554660 PTPRKQ15262 1439 aa18.39■□□□□ 0.53
VPS33B-204ENST00000554660 PLA2R1Q13018 1463 aa18.39■□□□□ 0.53
VPS33B-204ENST00000554660 CFDP1Q9UEE9 299 aaPredicted RBP18.38■□□□□ 0.53
VPS33B-204ENST00000554660 CCNB3Q8WWL7 1395 aa18.38■□□□□ 0.53
VPS33B-204ENST00000554660 TCOF1Q13428 1488 aaKnown RBP18.37■□□□□ 0.53
VPS33B-204ENST00000554660 TIAM1Q13009 1591 aa18.37■□□□□ 0.53
VPS33B-204ENST00000554660 ADGBQ8N7X0 1667 aa18.37■□□□□ 0.53
VPS33B-204ENST00000554660 GGT6Q6P531 493 aa18.36■□□□□ 0.53
VPS33B-204ENST00000554660 MTUS2Q5JR59 1369 aa18.35■□□□□ 0.53
VPS33B-204ENST00000554660 ZNF644Q9H582 1327 aaPredicted RBP18.32■□□□□ 0.52
VPS33B-204ENST00000554660 UBAP1LF5GYI3 381 aa18.31■□□□□ 0.52
VPS33B-204ENST00000554660 EHBP1L1Q8N3D4 1523 aa18.31■□□□□ 0.52
VPS33B-204ENST00000554660 PKD2Q13563 968 aa18.3■□□□□ 0.52
VPS33B-204ENST00000554660 MBD5Q9P267 1494 aa18.3■□□□□ 0.52
VPS33B-204ENST00000554660 DNMT1P26358 1616 aaKnown RBP18.3■□□□□ 0.52
VPS33B-204ENST00000554660 A2ML1A8K2U0 1454 aa18.29■□□□□ 0.52
VPS33B-204ENST00000554660 PPP6R1Q9UPN7 881 aa18.28■□□□□ 0.52
VPS33B-204ENST00000554660 POLR1AO95602 1720 aaPredicted RBP18.26■□□□□ 0.51
VPS33B-204ENST00000554660 NEURL4Q96JN8 1562 aa18.26■□□□□ 0.51
VPS33B-204ENST00000554660 RTEL1-TNFRSF6BF6WH68 1400 aa18.24■□□□□ 0.51
VPS33B-204ENST00000554660 KDM5DQ9BY66 1539 aa18.24■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 44.4 ms