RNA–Protein interactions for RNA: ENST00000553888.5

VIPAS39-206, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

APPRIS P1 TSL 2 BASIC

Gene VIPAS39, Length 2,934 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-206ENST00000553888 ABCC10Q5T3U5 1492 aa18.72■□□□□ 0.59
VIPAS39-206ENST00000553888 ABCC2Q92887 1545 aa18.72■□□□□ 0.59
VIPAS39-206ENST00000553888 DNMT1P26358 1616 aaKnown RBP18.71■□□□□ 0.59
VIPAS39-206ENST00000553888 ABCC5O15440 1437 aa18.71■□□□□ 0.59
VIPAS39-206ENST00000553888 SIN3AQ96ST3 1273 aa18.71■□□□□ 0.59
VIPAS39-206ENST00000553888 PRKCSHP14314 528 aaPredicted RBP18.7■□□□□ 0.58
VIPAS39-206ENST00000553888 GCC2Q8IWJ2 1684 aa18.7■□□□□ 0.58
VIPAS39-206ENST00000553888 NEUROD1Q13562 356 aa18.67■□□□□ 0.58
VIPAS39-206ENST00000553888 ZCCHC11Q5TAX3 1644 aaKnown RBP18.66■□□□□ 0.58
VIPAS39-206ENST00000553888 KCNH8Q96L42 1107 aa18.64■□□□□ 0.58
VIPAS39-206ENST00000553888 TTC37Q6PGP7 1564 aa18.64■□□□□ 0.57
VIPAS39-206ENST00000553888 CDC42BPBQ9Y5S2 1711 aa18.64■□□□□ 0.57
VIPAS39-206ENST00000553888 CROCC2H7BZ55 1655 aa18.61■□□□□ 0.57
VIPAS39-206ENST00000553888 ZNF316A6NFI3 1004 aaPredicted RBP18.61■□□□□ 0.57
VIPAS39-206ENST00000553888 OSCARQ8IYS5 282 aa18.61■□□□□ 0.57
VIPAS39-206ENST00000553888 TRIM52Q96A61 297 aa18.6■□□□□ 0.57
VIPAS39-206ENST00000553888 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP18.6■□□□□ 0.57
VIPAS39-206ENST00000553888 AKNAQ7Z591 1439 aa18.6■□□□□ 0.57
VIPAS39-206ENST00000553888 PREX2Q70Z35 1606 aa18.59■□□□□ 0.57
VIPAS39-206ENST00000553888 HNRNPMP52272 730 aaKnown RBP eCLIP18.58■□□□□ 0.57
VIPAS39-206ENST00000553888 UHRF1BP1LA0JNW5 1464 aa18.58■□□□□ 0.56
VIPAS39-206ENST00000553888 ADGBQ8N7X0 1667 aa18.57■□□□□ 0.56
VIPAS39-206ENST00000553888 KDM5BQ9UGL1 1544 aa18.57■□□□□ 0.56
VIPAS39-206ENST00000553888 SAMD9LQ8IVG5 1584 aa18.57■□□□□ 0.56
VIPAS39-206ENST00000553888 DENND4BO75064 1496 aaPredicted RBP18.57■□□□□ 0.56
VIPAS39-206ENST00000553888 ROCK1Q13464 1354 aa18.56■□□□□ 0.56
VIPAS39-206ENST00000553888 DIEXFQ68CQ4 756 aaKnown RBP18.54■□□□□ 0.56
VIPAS39-206ENST00000553888 FOXD1Q16676 465 aa18.54■□□□□ 0.56
VIPAS39-206ENST00000553888 MYO5CQ9NQX4 1742 aa18.54■□□□□ 0.56
VIPAS39-206ENST00000553888 NCOA1Q15788 1441 aa18.53■□□□□ 0.56
VIPAS39-206ENST00000553888 ARHGAP5Q13017 1502 aa18.53■□□□□ 0.56
VIPAS39-206ENST00000553888 MBD5Q9P267 1494 aa18.5■□□□□ 0.55
VIPAS39-206ENST00000553888 SYCP2Q9BX26 1530 aa18.5■□□□□ 0.55
VIPAS39-206ENST00000553888 MPHOSPH9Q99550 1183 aa18.5■□□□□ 0.55
VIPAS39-206ENST00000553888 C9orf84Q5VXU9 1444 aa18.49■□□□□ 0.55
VIPAS39-206ENST00000553888 ADGRL2O95490 1459 aa18.49■□□□□ 0.55
VIPAS39-206ENST00000553888 ANKRD30AQ9BXX3 1397 aa18.46■□□□□ 0.55
VIPAS39-206ENST00000553888 ARHGEF5Q12774 1597 aa18.46■□□□□ 0.54
VIPAS39-206ENST00000553888 TSPY4P0CV99 314 aa18.44■□□□□ 0.54
VIPAS39-206ENST00000553888 TSPY10P0CW01 314 aa18.44■□□□□ 0.54
VIPAS39-206ENST00000553888 SHANK2Q9UPX8 1470 aa18.44■□□□□ 0.54
VIPAS39-206ENST00000553888 CCDC141Q6ZP82 1450 aa18.43■□□□□ 0.54
VIPAS39-206ENST00000553888 ARHGEF12Q9NZN5 1544 aa18.43■□□□□ 0.54
VIPAS39-206ENST00000553888 WDR7Q9Y4E6 1490 aa18.42■□□□□ 0.54
VIPAS39-206ENST00000553888 ANKRD50Q9ULJ7 1429 aa18.42■□□□□ 0.54
VIPAS39-206ENST00000553888 PLCH2O75038 1416 aa18.41■□□□□ 0.54
VIPAS39-206ENST00000553888 SLC4A1APQ9BWU0 796 aaKnown RBP18.41■□□□□ 0.54
VIPAS39-206ENST00000553888 TONSLQ96HA7 1378 aa18.41■□□□□ 0.54
VIPAS39-206ENST00000553888 PZPP20742 1482 aa18.41■□□□□ 0.54
VIPAS39-206ENST00000553888 KIF15Q9NS87 1388 aa18.4■□□□□ 0.54
VIPAS39-206ENST00000553888 ASXL2Q76L83 1435 aa18.39■□□□□ 0.53
VIPAS39-206ENST00000553888 PPP1R15AO75807 674 aaPredicted RBP18.39■□□□□ 0.53
VIPAS39-206ENST00000553888 EFCAB2Q5VUJ9 269 aa18.35■□□□□ 0.53
VIPAS39-206ENST00000553888 HIRIP3Q9BW71 556 aaPredicted RBP18.35■□□□□ 0.53
VIPAS39-206ENST00000553888 ABCC1P33527 1531 aa18.35■□□□□ 0.53
VIPAS39-206ENST00000553888 TIMELESSQ9UNS1 1208 aa18.34■□□□□ 0.53
VIPAS39-206ENST00000553888 TRAPPC8Q9Y2L5 1435 aa18.34■□□□□ 0.53
VIPAS39-206ENST00000553888 ANKRD30BQ9BXX2 1392 aa18.34■□□□□ 0.53
VIPAS39-206ENST00000553888 ABCA9Q8IUA7 1624 aa18.33■□□□□ 0.52
VIPAS39-206ENST00000553888 KIAA1107Q9UPP5 1409 aa18.32■□□□□ 0.52
VIPAS39-206ENST00000553888 NUP155O75694 1391 aa18.32■□□□□ 0.52
VIPAS39-206ENST00000553888 MAST1Q9Y2H9 1570 aa18.31■□□□□ 0.52
VIPAS39-206ENST00000553888 PLEKHH2Q8IVE3 1493 aa18.31■□□□□ 0.52
VIPAS39-206ENST00000553888 NPM1P06748 294 aaKnown RBP eCLIP18.31■□□□□ 0.52
VIPAS39-206ENST00000553888 PKD2Q13563 968 aa18.31■□□□□ 0.52
VIPAS39-206ENST00000553888 RSPH4AQ5TD94 716 aa18.3■□□□□ 0.52
VIPAS39-206ENST00000553888 AFAP1Q8N556 730 aa18.3■□□□□ 0.52
VIPAS39-206ENST00000553888 FANCAO15360 1455 aa18.29■□□□□ 0.52
VIPAS39-206ENST00000553888 MIER1Q8N108 512 aa18.28■□□□□ 0.52
VIPAS39-206ENST00000553888 CYB5RLQ6IPT4 315 aa18.27■□□□□ 0.52
VIPAS39-206ENST00000553888 L3MBTL2Q969R5 705 aa18.27■□□□□ 0.52
VIPAS39-206ENST00000553888 PLXNC1O60486 1568 aa18.26■□□□□ 0.51
VIPAS39-206ENST00000553888 RPRD2Q5VT52 1461 aaKnown RBP18.26■□□□□ 0.51
VIPAS39-206ENST00000553888 GRWD1Q9BQ67 446 aaKnown RBP eCLIP18.26■□□□□ 0.514e-6■■■■□ 19.8
VIPAS39-206ENST00000553888 ARAP3Q8WWN8 1544 aa18.25■□□□□ 0.51
VIPAS39-206ENST00000553888 RIMBP3CA6NJZ7 1639 aa18.24■□□□□ 0.51
VIPAS39-206ENST00000553888 RIMBP3BA6NNM3 1639 aa18.24■□□□□ 0.51
VIPAS39-206ENST00000553888 RIMBP3Q9UFD9 1639 aa18.24■□□□□ 0.51
VIPAS39-206ENST00000553888 KDM5DQ9BY66 1539 aa18.23■□□□□ 0.51
VIPAS39-206ENST00000553888 ACIN1Q9UKV3 1341 aaKnown RBP18.23■□□□□ 0.51
VIPAS39-206ENST00000553888 ADGRL1O94910 1474 aa18.21■□□□□ 0.51
VIPAS39-206ENST00000553888 TEX14Q8IWB6 1497 aa18.21■□□□□ 0.51
VIPAS39-206ENST00000553888 SPAG9O60271 1321 aaKnown RBP18.21■□□□□ 0.51
VIPAS39-206ENST00000553888 FAM135AQ9P2D6 1515 aa18.21■□□□□ 0.51
VIPAS39-206ENST00000553888 SCAPERQ9BY12 1400 aa18.2■□□□□ 0.5
VIPAS39-206ENST00000553888 ZFYVE16Q7Z3T8 1539 aa18.2■□□□□ 0.5
VIPAS39-206ENST00000553888 DUOX2Q9NRD8 1548 aa18.19■□□□□ 0.5
VIPAS39-206ENST00000553888 UNC13BO14795 1591 aa18.19■□□□□ 0.5
VIPAS39-206ENST00000553888 NBPF8Q3BBV2 869 aa18.18■□□□□ 0.5
VIPAS39-206ENST00000553888 MYT1LQ9UL68 1186 aa18.17■□□□□ 0.5
VIPAS39-206ENST00000553888 CD109Q6YHK3 1445 aa18.17■□□□□ 0.5
VIPAS39-206ENST00000553888 ATP7AQ04656 1500 aa18.15■□□□□ 0.5
VIPAS39-206ENST00000553888 INO80Q9ULG1 1556 aaPredicted RBP18.14■□□□□ 0.5
VIPAS39-206ENST00000553888 ERBINQ96RT1 1412 aa18.14■□□□□ 0.49
VIPAS39-206ENST00000553888 DDX10Q13206 875 aaKnown RBP18.13■□□□□ 0.49
VIPAS39-206ENST00000553888 IQGAP3Q86VI3 1631 aa18.13■□□□□ 0.49
VIPAS39-206ENST00000553888 ZNF326Q5BKZ1 582 aaKnown RBP18.12■□□□□ 0.49
VIPAS39-206ENST00000553888 RTEL1-TNFRSF6BF6WH68 1400 aa18.11■□□□□ 0.49
VIPAS39-206ENST00000553888 KIDINS220Q9ULH0 1771 aa18.1■□□□□ 0.49
VIPAS39-206ENST00000553888 MAGI2Q86UL8 1455 aa18.09■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 10.8 ms