RNA–Protein interactions for RNA: ENST00000553609.5

NEDD1-205, Transcript of neural precursor cell expressed, developmentally down-regulated 1, humanhuman

TSL 3

Gene NEDD1, Length 581 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD1-205ENST00000553609 ARHGEF12Q9NZN5 1544 aa23.76■■□□□ 1.39
NEDD1-205ENST00000553609 FER1L4A9Z1Z3 1794 aa23.75■■□□□ 1.39
NEDD1-205ENST00000553609 ARHGAP35Q9NRY4 1499 aa23.75■■□□□ 1.39
NEDD1-205ENST00000553609 FMN1Q68DA7 1419 aa23.75■■□□□ 1.39
NEDD1-205ENST00000553609 ATP10AO60312 1499 aa23.74■■□□□ 1.39
NEDD1-205ENST00000553609 KIF14Q15058 1648 aa23.73■■□□□ 1.39
NEDD1-205ENST00000553609 MLECQ14165 292 aa23.72■■□□□ 1.39
NEDD1-205ENST00000553609 PLPPR3Q6T4P5 718 aa23.72■■□□□ 1.39
NEDD1-205ENST00000553609 C9orf84Q5VXU9 1444 aa23.72■■□□□ 1.39
NEDD1-205ENST00000553609 MYO5CQ9NQX4 1742 aa23.72■■□□□ 1.39
NEDD1-205ENST00000553609 EFCAB2Q5VUJ9 269 aa23.69■■□□□ 1.38
NEDD1-205ENST00000553609 KDM5CP41229 1560 aa23.68■■□□□ 1.38
NEDD1-205ENST00000553609 TROQ12816 1431 aaPredicted RBP23.67■■□□□ 1.38
NEDD1-205ENST00000553609 ZNF518AQ6AHZ1 1483 aa23.66■■□□□ 1.38
NEDD1-205ENST00000553609 UBTFP17480 764 aaKnown RBP23.64■■□□□ 1.37
NEDD1-205ENST00000553609 LRRIQ1Q96JM4 1722 aa23.64■■□□□ 1.37
NEDD1-205ENST00000553609 ATP1B4Q9UN42 357 aaPredicted RBP23.63■■□□□ 1.37
NEDD1-205ENST00000553609 EHMT2Q96KQ7 1210 aa23.62■■□□□ 1.37
NEDD1-205ENST00000553609 CDK11AQ9UQ88 783 aaPredicted RBP23.62■■□□□ 1.37
NEDD1-205ENST00000553609 PREX1Q8TCU6 1659 aa23.62■■□□□ 1.37
NEDD1-205ENST00000553609 ARHGAP5Q13017 1502 aa23.62■■□□□ 1.37
NEDD1-205ENST00000553609 DIP2CQ9Y2E4 1556 aa23.61■■□□□ 1.37
NEDD1-205ENST00000553609 AFAP1Q8N556 730 aa23.61■■□□□ 1.37
NEDD1-205ENST00000553609 CEBPAP49715 358 aaPredicted RBP23.6■■□□□ 1.37
NEDD1-205ENST00000553609 CERKQ8TCT0 537 aa23.6■■□□□ 1.37
NEDD1-205ENST00000553609 REREQ9P2R6 1566 aa23.6■■□□□ 1.37
NEDD1-205ENST00000553609 CLIP1P30622 1438 aa23.57■■□□□ 1.36
NEDD1-205ENST00000553609 ABCA6Q8N139 1617 aa23.56■■□□□ 1.36
NEDD1-205ENST00000553609 CDC42BPBQ9Y5S2 1711 aa23.56■■□□□ 1.36
NEDD1-205ENST00000553609 MLH3Q9UHC1 1453 aa23.56■■□□□ 1.36
NEDD1-205ENST00000553609 STRCQ7RTU9 1775 aa23.54■■□□□ 1.36
NEDD1-205ENST00000553609 ABCC1P33527 1531 aa23.54■■□□□ 1.36
NEDD1-205ENST00000553609 PREX2Q70Z35 1606 aa23.53■■□□□ 1.36
NEDD1-205ENST00000553609 TRAPPC8Q9Y2L5 1435 aa23.51■■□□□ 1.35
NEDD1-205ENST00000553609 AGLP35573 1532 aa23.51■■□□□ 1.35
NEDD1-205ENST00000553609 UHRF1BP1Q6BDS2 1440 aa23.5■■□□□ 1.35
NEDD1-205ENST00000553609 CASKIN1Q8WXD9 1431 aa23.49■■□□□ 1.35
NEDD1-205ENST00000553609 C3P01024 1663 aa23.48■■□□□ 1.35
NEDD1-205ENST00000553609 SENP3Q9H4L4 574 aaPredicted RBP23.47■■□□□ 1.35
NEDD1-205ENST00000553609 CCDC18Q5T9S5 1454 aa23.47■■□□□ 1.35
NEDD1-205ENST00000553609 ITSN2Q9NZM3 1697 aa23.47■■□□□ 1.35
NEDD1-205ENST00000553609 SETD1BQ9UPS6 1966 aaKnown RBP23.45■■□□□ 1.34
NEDD1-205ENST00000553609 KIDINS220Q9ULH0 1771 aa23.45■■□□□ 1.34
NEDD1-205ENST00000553609 DMRT2Q9Y5R5 561 aa23.42■■□□□ 1.34
NEDD1-205ENST00000553609 CDC42BPAQ5VT25 1732 aa23.42■■□□□ 1.34
NEDD1-205ENST00000553609 MYT1LQ9UL68 1186 aa23.41■■□□□ 1.34
NEDD1-205ENST00000553609 PTPRTO14522 1441 aa23.4■■□□□ 1.34
NEDD1-205ENST00000553609 SAMD9LQ8IVG5 1584 aa23.38■■□□□ 1.33
NEDD1-205ENST00000553609 FYCO1Q9BQS8 1478 aa23.37■■□□□ 1.33
NEDD1-205ENST00000553609 CNTLNQ9NXG0 1405 aa23.36■■□□□ 1.33
NEDD1-205ENST00000553609 LTBP4Q8N2S1 1624 aa23.34■■□□□ 1.33
NEDD1-205ENST00000553609 NCOA1Q15788 1441 aa23.33■■□□□ 1.33
NEDD1-205ENST00000553609 SYCP2Q9BX26 1530 aa23.33■■□□□ 1.33
NEDD1-205ENST00000553609 GPATCH8Q9UKJ3 1502 aaKnown RBP23.33■■□□□ 1.33
NEDD1-205ENST00000553609 MROH2AA6NES4 1674 aa23.3■■□□□ 1.32
NEDD1-205ENST00000553609 ESF1Q9H501 851 aaKnown RBP23.3■■□□□ 1.32
NEDD1-205ENST00000553609 NPATQ14207 1427 aa23.3■■□□□ 1.32
NEDD1-205ENST00000553609 PLXNC1O60486 1568 aa23.28■■□□□ 1.32
NEDD1-205ENST00000553609 INO80Q9ULG1 1556 aaPredicted RBP23.27■■□□□ 1.32
NEDD1-205ENST00000553609 ATP7AQ04656 1500 aa23.26■■□□□ 1.31
NEDD1-205ENST00000553609 KIAA1107Q9UPP5 1409 aa23.25■■□□□ 1.31
NEDD1-205ENST00000553609 ZNF777Q9ULD5 760 aaPredicted RBP23.25■■□□□ 1.31
NEDD1-205ENST00000553609 SPAG9O60271 1321 aaKnown RBP23.25■■□□□ 1.31
NEDD1-205ENST00000553609 ZMYM3Q14202 1370 aa23.25■■□□□ 1.31
NEDD1-205ENST00000553609 CAMSAP1Q5T5Y3 1602 aa23.24■■□□□ 1.31
NEDD1-205ENST00000553609 HNRNPMP52272 730 aaKnown RBP eCLIP23.24■■□□□ 1.31
NEDD1-205ENST00000553609 IQSEC2Q5JU85 1478 aa23.24■■□□□ 1.31
NEDD1-205ENST00000553609 ILDR2Q71H61 639 aa23.23■■□□□ 1.31
NEDD1-205ENST00000553609 DISP3Q9P2K9 1392 aa23.23■■□□□ 1.31
NEDD1-205ENST00000553609 SUPT6HQ7KZ85 1726 aaKnown RBP23.22■■□□□ 1.31
NEDD1-205ENST00000553609 PLEKHH2Q8IVE3 1493 aa23.21■■□□□ 1.31
NEDD1-205ENST00000553609 A2MP01023 1474 aa23.2■■□□□ 1.3
NEDD1-205ENST00000553609 ZNF142P52746 1687 aaPredicted RBP23.19■■□□□ 1.3
NEDD1-205ENST00000553609 CLTCQ00610 1675 aaKnown RBP23.19■■□□□ 1.3
NEDD1-205ENST00000553609 MYO3AQ8NEV4 1616 aa23.18■■□□□ 1.3
NEDD1-205ENST00000553609 PTPRKQ15262 1439 aa23.17■■□□□ 1.3
NEDD1-205ENST00000553609 CFDP1Q9UEE9 299 aaPredicted RBP23.17■■□□□ 1.3
NEDD1-205ENST00000553609 CCNB3Q8WWL7 1395 aa23.16■■□□□ 1.3
NEDD1-205ENST00000553609 PLA2R1Q13018 1463 aa23.16■■□□□ 1.3
NEDD1-205ENST00000553609 SPATA31D1Q6ZQQ2 1576 aa23.14■■□□□ 1.3
NEDD1-205ENST00000553609 CEP170BQ9Y4F5 1589 aaPredicted RBP23.14■■□□□ 1.3
NEDD1-205ENST00000553609 TCOF1Q13428 1488 aaKnown RBP23.14■■□□□ 1.29
NEDD1-205ENST00000553609 NCKAP5LQ9HCH0 1330 aa23.13■■□□□ 1.29
NEDD1-205ENST00000553609 TIAM1Q13009 1591 aa23.13■■□□□ 1.29
NEDD1-205ENST00000553609 MBD5Q9P267 1494 aa23.12■■□□□ 1.29
NEDD1-205ENST00000553609 ZNF335Q9H4Z2 1342 aaPredicted RBP23.11■■□□□ 1.29
NEDD1-205ENST00000553609 MTUS2Q5JR59 1369 aa23.11■■□□□ 1.29
NEDD1-205ENST00000553609 ZNF644Q9H582 1327 aaPredicted RBP23.1■■□□□ 1.29
NEDD1-205ENST00000553609 ADGBQ8N7X0 1667 aa23.1■■□□□ 1.29
NEDD1-205ENST00000553609 SOCS7O14512 581 aa23.1■■□□□ 1.29
NEDD1-205ENST00000553609 GGT6Q6P531 493 aa23.08■■□□□ 1.29
NEDD1-205ENST00000553609 PKD2Q13563 968 aa23.07■■□□□ 1.28
NEDD1-205ENST00000553609 PHF23Q9BUL5 403 aaPredicted RBP23.07■■□□□ 1.28
NEDD1-205ENST00000553609 EHBP1L1Q8N3D4 1523 aa23.07■■□□□ 1.28
NEDD1-205ENST00000553609 PPP6R1Q9UPN7 881 aa23.06■■□□□ 1.28
NEDD1-205ENST00000553609 RTEL1-TNFRSF6BF6WH68 1400 aa23.05■■□□□ 1.28
NEDD1-205ENST00000553609 CEP162Q5TB80 1403 aa23.04■■□□□ 1.28
NEDD1-205ENST00000553609 A2ML1A8K2U0 1454 aa23.04■■□□□ 1.28
NEDD1-205ENST00000553609 DNMT1P26358 1616 aaKnown RBP23.02■■□□□ 1.28
NEDD1-205ENST00000553609 DHX29Q7Z478 1369 aaKnown RBP23.01■■□□□ 1.27
Retrieved 100 of 20,778 RNA–protein pairs in 10.6 ms