RNA–Protein interactions for RNA: ENST00000550051.5

TRAFD1-207, Transcript of TRAF-type zinc finger domain containing 1, humanhuman

TSL 1 (best)

Gene TRAFD1, Length 1,003 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAFD1-207ENST00000550051 SCAPERQ9BY12 1400 aa16.4■□□□□ 0.22
TRAFD1-207ENST00000550051 YEATS2Q9ULM3 1422 aa16.4■□□□□ 0.22
TRAFD1-207ENST00000550051 CDK13Q14004 1512 aaKnown RBP16.4■□□□□ 0.22
TRAFD1-207ENST00000550051 HECW1Q76N89 1606 aa16.39■□□□□ 0.21
TRAFD1-207ENST00000550051 EFCAB2Q5VUJ9 269 aa16.39■□□□□ 0.21
TRAFD1-207ENST00000550051 CDK11AQ9UQ88 783 aaPredicted RBP16.38■□□□□ 0.21
TRAFD1-207ENST00000550051 SIGLEC1Q9BZZ2 1709 aa16.38■□□□□ 0.21
TRAFD1-207ENST00000550051 FMN1Q68DA7 1419 aa16.37■□□□□ 0.21
TRAFD1-207ENST00000550051 UBTFP17480 764 aaKnown RBP16.37■□□□□ 0.21
TRAFD1-207ENST00000550051 ATP10AO60312 1499 aa16.35■□□□□ 0.21
TRAFD1-207ENST00000550051 HSPA2P54652 639 aa16.35■□□□□ 0.21
TRAFD1-207ENST00000550051 MLECQ14165 292 aa16.34■□□□□ 0.21
TRAFD1-207ENST00000550051 ATP1B4Q9UN42 357 aaPredicted RBP16.34■□□□□ 0.21
TRAFD1-207ENST00000550051 ARHGAP35Q9NRY4 1499 aa16.33■□□□□ 0.2
TRAFD1-207ENST00000550051 MYO5CQ9NQX4 1742 aa16.33■□□□□ 0.2
TRAFD1-207ENST00000550051 FER1L4A9Z1Z3 1794 aa16.31■□□□□ 0.2
TRAFD1-207ENST00000550051 ARHGEF12Q9NZN5 1544 aa16.31■□□□□ 0.2
TRAFD1-207ENST00000550051 C9orf84Q5VXU9 1444 aa16.3■□□□□ 0.2
TRAFD1-207ENST00000550051 TROQ12816 1431 aaPredicted RBP16.29■□□□□ 0.2
TRAFD1-207ENST00000550051 AFAP1Q8N556 730 aa16.29■□□□□ 0.2
TRAFD1-207ENST00000550051 ZNF518AQ6AHZ1 1483 aa16.28■□□□□ 0.2
TRAFD1-207ENST00000550051 CERKQ8TCT0 537 aa16.27■□□□□ 0.2
TRAFD1-207ENST00000550051 SETD1BQ9UPS6 1966 aaKnown RBP16.27■□□□□ 0.19
TRAFD1-207ENST00000550051 KIF14Q15058 1648 aa16.27■□□□□ 0.19
TRAFD1-207ENST00000550051 EHMT2Q96KQ7 1210 aa16.26■□□□□ 0.19
TRAFD1-207ENST00000550051 CLIP1P30622 1438 aa16.26■□□□□ 0.19
TRAFD1-207ENST00000550051 CEBPAP49715 358 aaPredicted RBP16.25■□□□□ 0.19
TRAFD1-207ENST00000550051 KDM5CP41229 1560 aa16.25■□□□□ 0.19
TRAFD1-207ENST00000550051 ARHGAP5Q13017 1502 aa16.24■□□□□ 0.19
TRAFD1-207ENST00000550051 PREX1Q8TCU6 1659 aa16.24■□□□□ 0.19
TRAFD1-207ENST00000550051 LRRIQ1Q96JM4 1722 aa16.23■□□□□ 0.19
TRAFD1-207ENST00000550051 DMRT2Q9Y5R5 561 aa16.23■□□□□ 0.19
TRAFD1-207ENST00000550051 MLH3Q9UHC1 1453 aa16.22■□□□□ 0.19
TRAFD1-207ENST00000550051 CDC42BPBQ9Y5S2 1711 aa16.22■□□□□ 0.19
TRAFD1-207ENST00000550051 REREQ9P2R6 1566 aa16.21■□□□□ 0.19
TRAFD1-207ENST00000550051 MYT1LQ9UL68 1186 aa16.2■□□□□ 0.18
TRAFD1-207ENST00000550051 DIP2CQ9Y2E4 1556 aa16.19■□□□□ 0.18
TRAFD1-207ENST00000550051 PIAS4Q8N2W9 510 aaPredicted RBP16.19■□□□□ 0.18
TRAFD1-207ENST00000550051 STRCQ7RTU9 1775 aa16.18■□□□□ 0.18
TRAFD1-207ENST00000550051 AGLP35573 1532 aa16.18■□□□□ 0.18
TRAFD1-207ENST00000550051 CASKIN1Q8WXD9 1431 aa16.18■□□□□ 0.18
TRAFD1-207ENST00000550051 UHRF1BP1Q6BDS2 1440 aa16.16■□□□□ 0.18
TRAFD1-207ENST00000550051 TRAPPC8Q9Y2L5 1435 aa16.16■□□□□ 0.18
TRAFD1-207ENST00000550051 CCDC18Q5T9S5 1454 aa16.16■□□□□ 0.18
TRAFD1-207ENST00000550051 PREX2Q70Z35 1606 aa16.16■□□□□ 0.18
TRAFD1-207ENST00000550051 ABCA6Q8N139 1617 aa16.14■□□□□ 0.17
TRAFD1-207ENST00000550051 ABCC1P33527 1531 aa16.14■□□□□ 0.17
TRAFD1-207ENST00000550051 ESF1Q9H501 851 aaKnown RBP16.13■□□□□ 0.17
TRAFD1-207ENST00000550051 C3P01024 1663 aa16.13■□□□□ 0.17
TRAFD1-207ENST00000550051 KIDINS220Q9ULH0 1771 aa16.12■□□□□ 0.17
TRAFD1-207ENST00000550051 ITSN2Q9NZM3 1697 aa16.11■□□□□ 0.17
TRAFD1-207ENST00000550051 PTPRTO14522 1441 aa16.11■□□□□ 0.17
TRAFD1-207ENST00000550051 CDC42BPAQ5VT25 1732 aa16.11■□□□□ 0.17
TRAFD1-207ENST00000550051 CNTLNQ9NXG0 1405 aa16.1■□□□□ 0.17
TRAFD1-207ENST00000550051 FYCO1Q9BQS8 1478 aa16.08■□□□□ 0.16
TRAFD1-207ENST00000550051 GPATCH8Q9UKJ3 1502 aaKnown RBP16.07■□□□□ 0.16
TRAFD1-207ENST00000550051 SAMD9LQ8IVG5 1584 aa16.06■□□□□ 0.16
TRAFD1-207ENST00000550051 SPAG9O60271 1321 aaKnown RBP16.05■□□□□ 0.16
TRAFD1-207ENST00000550051 HNRNPMP52272 730 aaKnown RBP eCLIP16.05■□□□□ 0.16
TRAFD1-207ENST00000550051 ZNF777Q9ULD5 760 aaPredicted RBP16.05■□□□□ 0.16
TRAFD1-207ENST00000550051 NPATQ14207 1427 aa16.04■□□□□ 0.16
TRAFD1-207ENST00000550051 KIAA1107Q9UPP5 1409 aa16.04■□□□□ 0.16
TRAFD1-207ENST00000550051 ZMYM3Q14202 1370 aa16.04■□□□□ 0.16
TRAFD1-207ENST00000550051 MROH2AA6NES4 1674 aa16.04■□□□□ 0.16
TRAFD1-207ENST00000550051 CFDP1Q9UEE9 299 aaPredicted RBP16.02■□□□□ 0.16
TRAFD1-207ENST00000550051 NCOA1Q15788 1441 aa16.02■□□□□ 0.15
TRAFD1-207ENST00000550051 LTBP4Q8N2S1 1624 aa16.01■□□□□ 0.15
TRAFD1-207ENST00000550051 PLEKHH2Q8IVE3 1493 aa16.01■□□□□ 0.15
TRAFD1-207ENST00000550051 SYCP2Q9BX26 1530 aa16■□□□□ 0.15
TRAFD1-207ENST00000550051 IQSEC2Q5JU85 1478 aa15.99■□□□□ 0.15
TRAFD1-207ENST00000550051 SUPT6HQ7KZ85 1726 aaKnown RBP15.99■□□□□ 0.15
TRAFD1-207ENST00000550051 ATP7AQ04656 1500 aa15.98■□□□□ 0.15
TRAFD1-207ENST00000550051 CCNB3Q8WWL7 1395 aa15.98■□□□□ 0.15
TRAFD1-207ENST00000550051 A2MP01023 1474 aa15.97■□□□□ 0.15
TRAFD1-207ENST00000550051 CAMSAP1Q5T5Y3 1602 aa15.97■□□□□ 0.15
TRAFD1-207ENST00000550051 PLXNC1O60486 1568 aa15.96■□□□□ 0.15
TRAFD1-207ENST00000550051 DISP3Q9P2K9 1392 aa15.96■□□□□ 0.15
TRAFD1-207ENST00000550051 INO80Q9ULG1 1556 aaPredicted RBP15.96■□□□□ 0.14
TRAFD1-207ENST00000550051 PKD2Q13563 968 aa15.95■□□□□ 0.14
TRAFD1-207ENST00000550051 CLTCQ00610 1675 aaKnown RBP15.95■□□□□ 0.14
TRAFD1-207ENST00000550051 NCKAP5LQ9HCH0 1330 aa15.94■□□□□ 0.14
TRAFD1-207ENST00000550051 GGT6Q6P531 493 aa15.94■□□□□ 0.14
TRAFD1-207ENST00000550051 ILDR2Q71H61 639 aa15.94■□□□□ 0.14
TRAFD1-207ENST00000550051 MTUS2Q5JR59 1369 aa15.94■□□□□ 0.14
TRAFD1-207ENST00000550051 PTPRKQ15262 1439 aa15.94■□□□□ 0.14
TRAFD1-207ENST00000550051 ADGBQ8N7X0 1667 aa15.92■□□□□ 0.14
TRAFD1-207ENST00000550051 ZNF644Q9H582 1327 aaPredicted RBP15.92■□□□□ 0.14
TRAFD1-207ENST00000550051 PLA2R1Q13018 1463 aa15.91■□□□□ 0.14
TRAFD1-207ENST00000550051 MBD5Q9P267 1494 aa15.91■□□□□ 0.14
TRAFD1-207ENST00000550051 SOCS7O14512 581 aa15.91■□□□□ 0.14
TRAFD1-207ENST00000550051 RTEL1-TNFRSF6BF6WH68 1400 aa15.91■□□□□ 0.14
TRAFD1-207ENST00000550051 ZNF142P52746 1687 aaPredicted RBP15.9■□□□□ 0.14
TRAFD1-207ENST00000550051 TCOF1Q13428 1488 aaKnown RBP15.89■□□□□ 0.13
TRAFD1-207ENST00000550051 DHX29Q7Z478 1369 aaKnown RBP15.88■□□□□ 0.13
TRAFD1-207ENST00000550051 MYO3AQ8NEV4 1616 aa15.88■□□□□ 0.13
TRAFD1-207ENST00000550051 RSPH4AQ5TD94 716 aa15.88■□□□□ 0.13
TRAFD1-207ENST00000550051 ZNF335Q9H4Z2 1342 aaPredicted RBP15.88■□□□□ 0.13
TRAFD1-207ENST00000550051 CEP170BQ9Y4F5 1589 aaPredicted RBP15.87■□□□□ 0.13
TRAFD1-207ENST00000550051 TIAM1Q13009 1591 aa15.87■□□□□ 0.13
TRAFD1-207ENST00000550051 CEP162Q5TB80 1403 aa15.86■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms