RNA–Protein interactions for RNA: ENST00000544669.5

CPSF7-223, Transcript of cleavage and polyadenylation specific factor 7, humanhuman

TSL 5

Gene CPSF7, Length 1,800 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF7-223ENST00000544669 ITSN2Q9NZM3 1697 aa18.16■□□□□ 0.5
CPSF7-223ENST00000544669 ERCC6Q03468 1493 aa18.16■□□□□ 0.5
CPSF7-223ENST00000544669 RPRD2Q5VT52 1461 aaKnown RBP18.15■□□□□ 0.5
CPSF7-223ENST00000544669 ANKRD30BQ9BXX2 1392 aa18.15■□□□□ 0.5
CPSF7-223ENST00000544669 CFDP1Q9UEE9 299 aaPredicted RBP18.14■□□□□ 0.49
CPSF7-223ENST00000544669 KCNH8Q96L42 1107 aa18.13■□□□□ 0.49
CPSF7-223ENST00000544669 DENND4BO75064 1496 aaPredicted RBP18.13■□□□□ 0.49
CPSF7-223ENST00000544669 HSPA5P11021 654 aaKnown RBP18.12■□□□□ 0.49
CPSF7-223ENST00000544669 ADCY10Q96PN6 1610 aa18.11■□□□□ 0.49
CPSF7-223ENST00000544669 ADGRL2O95490 1459 aa18.11■□□□□ 0.49
CPSF7-223ENST00000544669 NUP160Q12769 1436 aa18.11■□□□□ 0.49
CPSF7-223ENST00000544669 HIRIP3Q9BW71 556 aaPredicted RBP18.11■□□□□ 0.49
CPSF7-223ENST00000544669 L3MBTL2Q969R5 705 aa18.1■□□□□ 0.49
CPSF7-223ENST00000544669 SLC4A1APQ9BWU0 796 aaKnown RBP18.1■□□□□ 0.49
CPSF7-223ENST00000544669 ANKRD30AQ9BXX3 1397 aa18.09■□□□□ 0.49
CPSF7-223ENST00000544669 PLEKHD1A6NEE1 506 aa18.08■□□□□ 0.48
CPSF7-223ENST00000544669 JPH4Q96JJ6 628 aa18.08■□□□□ 0.48
CPSF7-223ENST00000544669 GPATCH8Q9UKJ3 1502 aaKnown RBP18.07■□□□□ 0.48
CPSF7-223ENST00000544669 NCOA1Q15788 1441 aa18.07■□□□□ 0.48
CPSF7-223ENST00000544669 CAMSAP2Q08AD1 1489 aa18.07■□□□□ 0.48
CPSF7-223ENST00000544669 CNTLNQ9NXG0 1405 aa18.06■□□□□ 0.48
CPSF7-223ENST00000544669 WASHC2AQ641Q2 1341 aa18.06■□□□□ 0.48
CPSF7-223ENST00000544669 KDM6BO15054 1643 aa18.06■□□□□ 0.48
CPSF7-223ENST00000544669 ARID4BQ4LE39 1312 aaPredicted RBP18.05■□□□□ 0.48
CPSF7-223ENST00000544669 ADGBQ8N7X0 1667 aa18.05■□□□□ 0.48
CPSF7-223ENST00000544669 CEP170Q5SW79 1584 aa18.05■□□□□ 0.48
CPSF7-223ENST00000544669 PRG4Q92954 1404 aaPredicted RBP18.04■□□□□ 0.48
CPSF7-223ENST00000544669 ERICH6BQ5W0A0 696 aa18.04■□□□□ 0.48
CPSF7-223ENST00000544669 SHANK2Q9UPX8 1470 aa18.04■□□□□ 0.48
CPSF7-223ENST00000544669 ARID3CA6NKF2 412 aa18.02■□□□□ 0.48
CPSF7-223ENST00000544669 FKBP8Q14318 412 aa18.02■□□□□ 0.48
CPSF7-223ENST00000544669 RSPH4AQ5TD94 716 aa18.02■□□□□ 0.48
CPSF7-223ENST00000544669 KIAA1107Q9UPP5 1409 aa18.02■□□□□ 0.48
CPSF7-223ENST00000544669 TEX14Q8IWB6 1497 aa18.02■□□□□ 0.48
CPSF7-223ENST00000544669 CCDC7Q96M83 1385 aa18.02■□□□□ 0.47
CPSF7-223ENST00000544669 PLB1Q6P1J6 1458 aa18■□□□□ 0.47
CPSF7-223ENST00000544669 ZNF644Q9H582 1327 aaPredicted RBP18■□□□□ 0.47
CPSF7-223ENST00000544669 KIF14Q15058 1648 aa17.99■□□□□ 0.47
CPSF7-223ENST00000544669 TSPY4P0CV99 314 aa17.98■□□□□ 0.47
CPSF7-223ENST00000544669 TSPY10P0CW01 314 aa17.98■□□□□ 0.47
CPSF7-223ENST00000544669 ABCA8O94911 1581 aa17.98■□□□□ 0.47
CPSF7-223ENST00000544669 PZPP20742 1482 aa17.97■□□□□ 0.47
CPSF7-223ENST00000544669 SPATA31E1Q6ZUB1 1445 aa17.97■□□□□ 0.47
CPSF7-223ENST00000544669 ANKRD50Q9ULJ7 1429 aa17.97■□□□□ 0.47
CPSF7-223ENST00000544669 CROCC2H7BZ55 1655 aa17.96■□□□□ 0.47
CPSF7-223ENST00000544669 FBLN2P98095 1184 aa17.96■□□□□ 0.47
CPSF7-223ENST00000544669 HNRNPUQ00839 825 aaKnown RBP eCLIP17.94■□□□□ 0.46
CPSF7-223ENST00000544669 PRKRIP1Q9H875 184 aaPredicted RBP17.93■□□□□ 0.46
CPSF7-223ENST00000544669 ZNF777Q9ULD5 760 aaPredicted RBP17.93■□□□□ 0.46
CPSF7-223ENST00000544669 ROCK2O75116 1388 aaKnown RBP17.93■□□□□ 0.46
CPSF7-223ENST00000544669 ABCC10Q5T3U5 1492 aa17.92■□□□□ 0.46
CPSF7-223ENST00000544669 FOXD1Q16676 465 aa17.92■□□□□ 0.46
CPSF7-223ENST00000544669 TSHZ2Q9NRE2 1034 aa17.92■□□□□ 0.46
CPSF7-223ENST00000544669 ATP10BO94823 1461 aa17.92■□□□□ 0.46
CPSF7-223ENST00000544669 KDM5DQ9BY66 1539 aa17.91■□□□□ 0.46
CPSF7-223ENST00000544669 NBPF8Q3BBV2 869 aa17.91■□□□□ 0.46
CPSF7-223ENST00000544669 ARHGEF5Q12774 1597 aa17.91■□□□□ 0.46
CPSF7-223ENST00000544669 POLR1AO95602 1720 aaPredicted RBP17.9■□□□□ 0.46
CPSF7-223ENST00000544669 ARHGEF12Q9NZN5 1544 aa17.9■□□□□ 0.46
CPSF7-223ENST00000544669 C9orf84Q5VXU9 1444 aa17.9■□□□□ 0.46
CPSF7-223ENST00000544669 UHRF1BP1Q6BDS2 1440 aa17.9■□□□□ 0.46
CPSF7-223ENST00000544669 MBD5Q9P267 1494 aa17.9■□□□□ 0.46
CPSF7-223ENST00000544669 PKD2Q13563 968 aa17.9■□□□□ 0.46
CPSF7-223ENST00000544669 PTPRGP23470 1445 aa17.88■□□□□ 0.45
CPSF7-223ENST00000544669 KIF7Q2M1P5 1343 aa17.87■□□□□ 0.45
CPSF7-223ENST00000544669 NUP155O75694 1391 aa17.87■□□□□ 0.45
CPSF7-223ENST00000544669 ZBED9Q6R2W3 1325 aa17.85■□□□□ 0.45
CPSF7-223ENST00000544669 MRS2Q9HD23 443 aa17.84■□□□□ 0.45
CPSF7-223ENST00000544669 KTN1Q86UP2 1357 aaKnown RBP17.84■□□□□ 0.45
CPSF7-223ENST00000544669 CDC42BPAQ5VT25 1732 aa17.84■□□□□ 0.45
CPSF7-223ENST00000544669 USP47Q96K76 1375 aa17.83■□□□□ 0.44
CPSF7-223ENST00000544669 RALGAPBQ86X10 1494 aa17.82■□□□□ 0.44
CPSF7-223ENST00000544669 PLEKHH2Q8IVE3 1493 aa17.82■□□□□ 0.44
CPSF7-223ENST00000544669 C11orf95C9JLR9 678 aaPredicted RBP17.82■□□□□ 0.44
CPSF7-223ENST00000544669 CCDC141Q6ZP82 1450 aa17.82■□□□□ 0.44
CPSF7-223ENST00000544669 KIF15Q9NS87 1388 aa17.81■□□□□ 0.44
CPSF7-223ENST00000544669 BCANQ96GW7 911 aa17.8■□□□□ 0.44
CPSF7-223ENST00000544669 MAST1Q9Y2H9 1570 aa17.75■□□□□ 0.43
CPSF7-223ENST00000544669 KDM5CP41229 1560 aa17.75■□□□□ 0.43
CPSF7-223ENST00000544669 CARD11Q9BXL7 1154 aa17.75■□□□□ 0.43
CPSF7-223ENST00000544669 PPP4R2Q9NY27 417 aa17.75■□□□□ 0.43
CPSF7-223ENST00000544669 PREX2Q70Z35 1606 aa17.74■□□□□ 0.43
CPSF7-223ENST00000544669 FAM9BQ8IZU0 186 aa17.74■□□□□ 0.43
CPSF7-223ENST00000544669 HNRNPMP52272 730 aaKnown RBP eCLIP17.72■□□□□ 0.43
CPSF7-223ENST00000544669 DHX29Q7Z478 1369 aaKnown RBP17.72■□□□□ 0.43
CPSF7-223ENST00000544669 RALBP1Q15311 655 aa17.71■□□□□ 0.43
CPSF7-223ENST00000544669 ZNF326Q5BKZ1 582 aaKnown RBP17.7■□□□□ 0.42
CPSF7-223ENST00000544669 CCDC144AA2RUR9 1427 aa17.69■□□□□ 0.42
CPSF7-223ENST00000544669 SHROOM2Q13796 1616 aa17.69■□□□□ 0.42
CPSF7-223ENST00000544669 FAM135AQ9P2D6 1515 aa17.69■□□□□ 0.42
CPSF7-223ENST00000544669 SAMD9LQ8IVG5 1584 aa17.69■□□□□ 0.42
CPSF7-223ENST00000544669 STAC3Q96MF2 364 aa17.68■□□□□ 0.42
CPSF7-223ENST00000544669 WASHC2CQ9Y4E1 1318 aa17.67■□□□□ 0.42
CPSF7-223ENST00000544669 SMG6Q86US8 1419 aaKnown RBP17.67■□□□□ 0.42
CPSF7-223ENST00000544669 DCAF11Q8TEB1 546 aa17.66■□□□□ 0.42
CPSF7-223ENST00000544669 RBM19Q9Y4C8 960 aaKnown RBP17.66■□□□□ 0.42
CPSF7-223ENST00000544669 ARHGAP5Q13017 1502 aa17.66■□□□□ 0.42
CPSF7-223ENST00000544669 ABCC2Q92887 1545 aa17.66■□□□□ 0.42
CPSF7-223ENST00000544669 PLXNC1O60486 1568 aa17.66■□□□□ 0.42
CPSF7-223ENST00000544669 CCDC184Q52MB2 194 aa17.65■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 14.3 ms