RNA–Protein interactions for RNA: ENST00000543633.5

VPS33A-208, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 5

Gene VPS33A, Length 2,019 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-208ENST00000543633 TRIM52Q96A61 297 aa19.12■□□□□ 0.65
VPS33A-208ENST00000543633 KIAA0556O60303 1618 aa19.12■□□□□ 0.65
VPS33A-208ENST00000543633 DNMT1P26358 1616 aaKnown RBP19.11■□□□□ 0.65
VPS33A-208ENST00000543633 ERICH6BQ5W0A0 696 aa19.09■□□□□ 0.65
VPS33A-208ENST00000543633 JPH4Q96JJ6 628 aa19.08■□□□□ 0.65
VPS33A-208ENST00000543633 NCOA1Q15788 1441 aa19.08■□□□□ 0.64
VPS33A-208ENST00000543633 WASHC2AQ641Q2 1341 aa19.07■□□□□ 0.64
VPS33A-208ENST00000543633 EIF4G2P78344 907 aaKnown RBP eCLIP19.07■□□□□ 0.646e-9■■■■■ 37.6
VPS33A-208ENST00000543633 CDK13Q14004 1512 aaKnown RBP19.07■□□□□ 0.64
VPS33A-208ENST00000543633 RPRD2Q5VT52 1461 aaKnown RBP19.07■□□□□ 0.64
VPS33A-208ENST00000543633 HSPA5P11021 654 aaKnown RBP19.07■□□□□ 0.64
VPS33A-208ENST00000543633 TEX14Q8IWB6 1497 aa19.04■□□□□ 0.64
VPS33A-208ENST00000543633 DAPK1P53355 1430 aa19.04■□□□□ 0.64
VPS33A-208ENST00000543633 RRP7BPQ9NSQ0 103 aa19.03■□□□□ 0.64
VPS33A-208ENST00000543633 RBM19Q9Y4C8 960 aaKnown RBP19.03■□□□□ 0.64
VPS33A-208ENST00000543633 MPHOSPH9Q99550 1183 aa19.02■□□□□ 0.64
VPS33A-208ENST00000543633 SHROOM2Q13796 1616 aa19.01■□□□□ 0.63
VPS33A-208ENST00000543633 ANKRD30BQ9BXX2 1392 aa19.01■□□□□ 0.63
VPS33A-208ENST00000543633 CCDC7Q96M83 1385 aa19■□□□□ 0.63
VPS33A-208ENST00000543633 ADGBQ8N7X0 1667 aa19■□□□□ 0.63
VPS33A-208ENST00000543633 HNRNPUQ00839 825 aaKnown RBP eCLIP19■□□□□ 0.63
VPS33A-208ENST00000543633 CARMIL2Q6F5E8 1435 aa19■□□□□ 0.63
VPS33A-208ENST00000543633 ITSN2Q9NZM3 1697 aa18.99■□□□□ 0.63
VPS33A-208ENST00000543633 CLASP1Q7Z460 1538 aa18.99■□□□□ 0.63
VPS33A-208ENST00000543633 RAPGEF6Q8TEU7 1601 aa18.99■□□□□ 0.63
VPS33A-208ENST00000543633 ABCC5O15440 1437 aa18.97■□□□□ 0.63
VPS33A-208ENST00000543633 PRG4Q92954 1404 aaPredicted RBP18.96■□□□□ 0.63
VPS33A-208ENST00000543633 CHIC2Q9UKJ5 165 aa18.96■□□□□ 0.63
VPS33A-208ENST00000543633 SPATA31E1Q6ZUB1 1445 aa18.96■□□□□ 0.63
VPS33A-208ENST00000543633 ADCY10Q96PN6 1610 aa18.95■□□□□ 0.62
VPS33A-208ENST00000543633 CROCC2H7BZ55 1655 aa18.95■□□□□ 0.62
VPS33A-208ENST00000543633 L3MBTL2Q969R5 705 aa18.95■□□□□ 0.62
VPS33A-208ENST00000543633 NUP153P49790 1475 aaKnown RBP18.93■□□□□ 0.62
VPS33A-208ENST00000543633 ADGRL2O95490 1459 aa18.92■□□□□ 0.62
VPS33A-208ENST00000543633 MBD5Q9P267 1494 aa18.92■□□□□ 0.62
VPS33A-208ENST00000543633 FANCIQ9NVI1 1328 aa18.92■□□□□ 0.62
VPS33A-208ENST00000543633 PRKRIP1Q9H875 184 aaPredicted RBP18.91■□□□□ 0.62
VPS33A-208ENST00000543633 ZBED9Q6R2W3 1325 aa18.91■□□□□ 0.62
VPS33A-208ENST00000543633 PLB1Q6P1J6 1458 aa18.9■□□□□ 0.62
VPS33A-208ENST00000543633 KIF14Q15058 1648 aa18.9■□□□□ 0.62
VPS33A-208ENST00000543633 PZPP20742 1482 aa18.89■□□□□ 0.61
VPS33A-208ENST00000543633 ERCC6L2Q5T890 1561 aa18.88■□□□□ 0.61
VPS33A-208ENST00000543633 CDK11AQ9UQ88 783 aaPredicted RBP18.88■□□□□ 0.61
VPS33A-208ENST00000543633 PPP4R2Q9NY27 417 aa18.87■□□□□ 0.61
VPS33A-208ENST00000543633 TROQ12816 1431 aaPredicted RBP18.87■□□□□ 0.61
VPS33A-208ENST00000543633 CAMSAP2Q08AD1 1489 aa18.86■□□□□ 0.61
VPS33A-208ENST00000543633 ABCA8O94911 1581 aa18.86■□□□□ 0.61
VPS33A-208ENST00000543633 ARID4BQ4LE39 1312 aaPredicted RBP18.84■□□□□ 0.61
VPS33A-208ENST00000543633 PTPRGP23470 1445 aa18.83■□□□□ 0.61
VPS33A-208ENST00000543633 NBPF8Q3BBV2 869 aa18.83■□□□□ 0.61
VPS33A-208ENST00000543633 KIF7Q2M1P5 1343 aa18.83■□□□□ 0.6
VPS33A-208ENST00000543633 KIAA1107Q9UPP5 1409 aa18.83■□□□□ 0.6
VPS33A-208ENST00000543633 C11orf95C9JLR9 678 aaPredicted RBP18.82■□□□□ 0.6
VPS33A-208ENST00000543633 MRS2Q9HD23 443 aa18.81■□□□□ 0.6
VPS33A-208ENST00000543633 KDM5CP41229 1560 aa18.8■□□□□ 0.6
VPS33A-208ENST00000543633 SLC4A1APQ9BWU0 796 aaKnown RBP18.8■□□□□ 0.6
VPS33A-208ENST00000543633 SHANK2Q9UPX8 1470 aa18.79■□□□□ 0.6
VPS33A-208ENST00000543633 ARHGEF12Q9NZN5 1544 aa18.79■□□□□ 0.6
VPS33A-208ENST00000543633 ARID3CA6NKF2 412 aa18.78■□□□□ 0.6
VPS33A-208ENST00000543633 OSCARQ8IYS5 282 aa18.78■□□□□ 0.6
VPS33A-208ENST00000543633 KDM5DQ9BY66 1539 aa18.78■□□□□ 0.6
VPS33A-208ENST00000543633 UHRF1BP1Q6BDS2 1440 aa18.78■□□□□ 0.6
VPS33A-208ENST00000543633 CCDC184Q52MB2 194 aa18.78■□□□□ 0.6
VPS33A-208ENST00000543633 GPATCH8Q9UKJ3 1502 aaKnown RBP18.77■□□□□ 0.6
VPS33A-208ENST00000543633 SMG6Q86US8 1419 aaKnown RBP18.77■□□□□ 0.6
VPS33A-208ENST00000543633 FOXD1Q16676 465 aa18.77■□□□□ 0.6
VPS33A-208ENST00000543633 DHX29Q7Z478 1369 aaKnown RBP18.76■□□□□ 0.59
VPS33A-208ENST00000543633 BCORL1Q5H9F3 1711 aa18.76■□□□□ 0.59
VPS33A-208ENST00000543633 ROCK2O75116 1388 aaKnown RBP18.76■□□□□ 0.59
VPS33A-208ENST00000543633 RALGAPBQ86X10 1494 aa18.76■□□□□ 0.59
VPS33A-208ENST00000543633 ANKRD30AQ9BXX3 1397 aa18.74■□□□□ 0.59
VPS33A-208ENST00000543633 ATP10BO94823 1461 aa18.73■□□□□ 0.59
VPS33A-208ENST00000543633 CDC42BPAQ5VT25 1732 aa18.73■□□□□ 0.59
VPS33A-208ENST00000543633 USP47Q96K76 1375 aa18.72■□□□□ 0.59
VPS33A-208ENST00000543633 ZNF644Q9H582 1327 aaPredicted RBP18.72■□□□□ 0.59
VPS33A-208ENST00000543633 FAM9BQ8IZU0 186 aa18.72■□□□□ 0.59
VPS33A-208ENST00000543633 MSH5O43196 834 aa18.71■□□□□ 0.59
VPS33A-208ENST00000543633 IRX6P78412 446 aaPredicted RBP18.71■□□□□ 0.59
VPS33A-208ENST00000543633 CFDP1Q9UEE9 299 aaPredicted RBP18.69■□□□□ 0.58
VPS33A-208ENST00000543633 ABCC2Q92887 1545 aa18.69■□□□□ 0.58
VPS33A-208ENST00000543633 KTN1Q86UP2 1357 aaKnown RBP18.68■□□□□ 0.58
VPS33A-208ENST00000543633 RNF123Q5XPI4 1314 aa18.68■□□□□ 0.58
VPS33A-208ENST00000543633 E9PCH4 1651 aa18.68■□□□□ 0.58
VPS33A-208ENST00000543633 ANKRD50Q9ULJ7 1429 aa18.68■□□□□ 0.58
VPS33A-208ENST00000543633 MYT1LQ9UL68 1186 aa18.67■□□□□ 0.58
VPS33A-208ENST00000543633 ARHGEF5Q12774 1597 aa18.67■□□□□ 0.58
VPS33A-208ENST00000543633 UHRF1BP1LA0JNW5 1464 aa18.65■□□□□ 0.58
VPS33A-208ENST00000543633 ABCC10Q5T3U5 1492 aa18.65■□□□□ 0.58
VPS33A-208ENST00000543633 NUDCQ9Y266 331 aa18.64■□□□□ 0.57
VPS33A-208ENST00000543633 ERICH6Q7L0X2 663 aa18.63■□□□□ 0.57
VPS33A-208ENST00000543633 C9orf84Q5VXU9 1444 aa18.62■□□□□ 0.57
VPS33A-208ENST00000543633 KIF15Q9NS87 1388 aa18.61■□□□□ 0.57
VPS33A-208ENST00000543633 PKD2Q13563 968 aa18.61■□□□□ 0.57
VPS33A-208ENST00000543633 PLEKHD1A6NEE1 506 aa18.6■□□□□ 0.57
VPS33A-208ENST00000543633 BRD4O60885 1362 aaPredicted RBP18.58■□□□□ 0.56
VPS33A-208ENST00000543633 LRPPRCP42704 1394 aaKnown RBP18.58■□□□□ 0.56
VPS33A-208ENST00000543633 LAMC1P11047 1609 aa18.57■□□□□ 0.56
VPS33A-208ENST00000543633 B4GALNT3Q6L9W6 998 aa18.57■□□□□ 0.56
VPS33A-208ENST00000543633 ZCCHC11Q5TAX3 1644 aaKnown RBP18.56■□□□□ 0.56
VPS33A-208ENST00000543633 BCL11AQ9H165 835 aa18.55■□□□□ 0.56
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms