RNA–Protein interactions for RNA: ENST00000543545.5

CPSF7-221, Transcript of cleavage and polyadenylation specific factor 7, human

TSL 5

Gene CPSF7, Length 495 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CPSF7-221	ENST00000543545	HNRNPM	P52272	730 aa	Known RBP eCLIP	15.51	■□□□□ 0.07
CPSF7-221	ENST00000543545	MAP3K4	Q9Y6R4	1608 aa		15.5	■□□□□ 0.07
CPSF7-221	ENST00000543545	MIA2	Q96PC5	1412 aa		15.5	■□□□□ 0.07
CPSF7-221	ENST00000543545	NEO1	Q92859	1461 aa		15.49	■□□□□ 0.07
CPSF7-221	ENST00000543545	MYT1L	Q9UL68	1186 aa		15.49	■□□□□ 0.07
CPSF7-221	ENST00000543545	KIF13A	Q9H1H9	1805 aa		15.49	■□□□□ 0.07
CPSF7-221	ENST00000543545	FGD6	Q6ZV73	1430 aa		15.49	■□□□□ 0.07
CPSF7-221	ENST00000543545	SCAPER	Q9BY12	1400 aa		15.49	■□□□□ 0.07
CPSF7-221	ENST00000543545	RAPGEF3	O95398	923 aa		15.48	■□□□□ 0.07
CPSF7-221	ENST00000543545	ARAP3	Q8WWN8	1544 aa		15.47	■□□□□ 0.07
CPSF7-221	ENST00000543545	ADGRL1	O94910	1474 aa		15.46	■□□□□ 0.07
CPSF7-221	ENST00000543545	TSPOAP1	O95153	1857 aa		15.46	■□□□□ 0.07
CPSF7-221	ENST00000543545	ITGAE	P38570	1179 aa		15.46	■□□□□ 0.07
CPSF7-221	ENST00000543545	AFAP1	Q8N556	730 aa		15.46	■□□□□ 0.07
CPSF7-221	ENST00000543545	RSPH4A	Q5TD94	716 aa		15.45	■□□□□ 0.06
CPSF7-221	ENST00000543545	PLEKHH2	Q8IVE3	1493 aa		15.45	■□□□□ 0.06
CPSF7-221	ENST00000543545	MYO5C	Q9NQX4	1742 aa		15.44	■□□□□ 0.06
CPSF7-221	ENST00000543545	TSPY4	P0CV99	314 aa		15.44	■□□□□ 0.06
CPSF7-221	ENST00000543545	TSPY10	P0CW01	314 aa		15.44	■□□□□ 0.06
CPSF7-221	ENST00000543545	DENND4B	O75064	1496 aa	Predicted RBP	15.44	■□□□□ 0.06
CPSF7-221	ENST00000543545	KIAA1107	Q9UPP5	1409 aa		15.43	■□□□□ 0.06
CPSF7-221	ENST00000543545	PREX2	Q70Z35	1606 aa		15.43	■□□□□ 0.06
CPSF7-221	ENST00000543545	CAMSAP2	Q08AD1	1489 aa		15.42	■□□□□ 0.06
CPSF7-221	ENST00000543545	CDC42BPA	Q5VT25	1732 aa		15.41	■□□□□ 0.06
CPSF7-221	ENST00000543545	ITSN2	Q9NZM3	1697 aa		15.41	■□□□□ 0.06
CPSF7-221	ENST00000543545	SPAG9	O60271	1321 aa	Known RBP	15.41	■□□□□ 0.06
CPSF7-221	ENST00000543545	TRAPPC8	Q9Y2L5	1435 aa		15.4	■□□□□ 0.06
CPSF7-221	ENST00000543545	CDC42BPB	Q9Y5S2	1711 aa		15.4	■□□□□ 0.06
CPSF7-221	ENST00000543545	COL17A1	Q9UMD9	1497 aa	Predicted RBP	15.4	■□□□□ 0.06
CPSF7-221	ENST00000543545	PPRC1	Q5VV67	1664 aa	Known RBP	15.39	■□□□□ 0.05
CPSF7-221	ENST00000543545	CHIC2	Q9UKJ5	165 aa		15.39	■□□□□ 0.05
CPSF7-221	ENST00000543545	RRBP1	Q9P2E9	1410 aa	Known RBP	15.39	■□□□□ 0.05
CPSF7-221	ENST00000543545	CFAP74	Q9C0B2	1584 aa		15.39	■□□□□ 0.05
CPSF7-221	ENST00000543545	ARHGEF12	Q9NZN5	1544 aa		15.38	■□□□□ 0.05
CPSF7-221	ENST00000543545	SAMD9L	Q8IVG5	1584 aa		15.38	■□□□□ 0.05
CPSF7-221	ENST00000543545	TCOF1	Q13428	1488 aa	Known RBP	15.38	■□□□□ 0.05
CPSF7-221	ENST00000543545	SYCP2	Q9BX26	1530 aa		15.38	■□□□□ 0.05
CPSF7-221	ENST00000543545	PTPN23	Q9H3S7	1636 aa		15.37	■□□□□ 0.05
CPSF7-221	ENST00000543545	MBD5	Q9P267	1494 aa		15.37	■□□□□ 0.05
CPSF7-221	ENST00000543545	POGZ	Q7Z3K3	1410 aa		15.36	■□□□□ 0.05
CPSF7-221	ENST00000543545	ABCC1	P33527	1531 aa		15.36	■□□□□ 0.05
CPSF7-221	ENST00000543545	DROSHA	Q9NRR4	1374 aa	Known RBP eCLIP	15.36	■□□□□ 0.05
CPSF7-221	ENST00000543545	ZNF518A	Q6AHZ1	1483 aa		15.35	■□□□□ 0.05
CPSF7-221	ENST00000543545	ABCC5	O15440	1437 aa		15.34	■□□□□ 0.05
CPSF7-221	ENST00000543545	CCDC141	Q6ZP82	1450 aa		15.34	■□□□□ 0.05
CPSF7-221	ENST00000543545	KDM6B	O15054	1643 aa		15.33	■□□□□ 0.04
CPSF7-221	ENST00000543545	TRIM26	Q12899	539 aa	Predicted RBP	15.33	■□□□□ 0.04
CPSF7-221	ENST00000543545	DAPK1	P53355	1430 aa		15.33	■□□□□ 0.04
CPSF7-221	ENST00000543545	RRP7BP	Q9NSQ0	103 aa		15.32	■□□□□ 0.04
CPSF7-221	ENST00000543545	C9orf84	Q5VXU9	1444 aa		15.3	■□□□□ 0.04
CPSF7-221	ENST00000543545	ANKRD30A	Q9BXX3	1397 aa		15.28	■□□□□ 0.04
CPSF7-221	ENST00000543545	ARHGEF5	Q12774	1597 aa		15.28	■□□□□ 0.04
CPSF7-221	ENST00000543545	PTPRK	Q15262	1439 aa		15.27	■□□□□ 0.04
CPSF7-221	ENST00000543545	ARID4B	Q4LE39	1312 aa	Predicted RBP	15.27	■□□□□ 0.04
CPSF7-221	ENST00000543545	MAGI2	Q86UL8	1455 aa		15.27	■□□□□ 0.03
CPSF7-221	ENST00000543545	MLH3	Q9UHC1	1453 aa		15.27	■□□□□ 0.03
CPSF7-221	ENST00000543545	RTEL1-TNFRSF6B	F6WH68	1400 aa		15.26	■□□□□ 0.03
CPSF7-221	ENST00000543545	YEATS2	Q9ULM3	1422 aa		15.26	■□□□□ 0.03
CPSF7-221	ENST00000543545	FRMPD1	Q5SYB0	1578 aa		15.24	■□□□□ 0.03
CPSF7-221	ENST00000543545	KIF15	Q9NS87	1388 aa		15.24	■□□□□ 0.03
CPSF7-221	ENST00000543545	SHANK2	Q9UPX8	1470 aa		15.23	■□□□□ 0.03
CPSF7-221	ENST00000543545	DNMT1	P26358	1616 aa	Known RBP	15.23	■□□□□ 0.03
CPSF7-221	ENST00000543545	KDM5C	P41229	1560 aa		15.23	■□□□□ 0.03
CPSF7-221	ENST00000543545	ZFYVE16	Q7Z3T8	1539 aa		15.22	■□□□□ 0.03
CPSF7-221	ENST00000543545	ATP10A	O60312	1499 aa		15.22	■□□□□ 0.03
CPSF7-221	ENST00000543545	NCOA1	Q15788	1441 aa		15.22	■□□□□ 0.03
CPSF7-221	ENST00000543545	ROCK1	Q13464	1354 aa		15.22	■□□□□ 0.03
CPSF7-221	ENST00000543545	ATP7A	Q04656	1500 aa		15.22	■□□□□ 0.03
CPSF7-221	ENST00000543545	ZMYM4	Q5VZL5	1548 aa		15.22	■□□□□ 0.03
CPSF7-221	ENST00000543545	RICTOR	Q6R327	1708 aa		15.21	■□□□□ 0.03
CPSF7-221	ENST00000543545	PCGF6	Q9BYE7	350 aa		15.21	■□□□□ 0.03
CPSF7-221	ENST00000543545	DHX29	Q7Z478	1369 aa	Known RBP	15.21	■□□□□ 0.02
CPSF7-221	ENST00000543545	KIF3B	O15066	747 aa		15.2	■□□□□ 0.02
CPSF7-221	ENST00000543545	MLEC	Q14165	292 aa		15.2	■□□□□ 0.02
CPSF7-221	ENST00000543545	HECW2	Q9P2P5	1572 aa		15.19	■□□□□ 0.02
CPSF7-221	ENST00000543545	A2M	P01023	1474 aa		15.19	■□□□□ 0.02
CPSF7-221	ENST00000543545	GGT6	Q6P531	493 aa		15.18	■□□□□ 0.02
CPSF7-221	ENST00000543545	MAST1	Q9Y2H9	1570 aa		15.17	■□□□□ 0.02
CPSF7-221	ENST00000543545	ADGRL2	O95490	1459 aa		15.17	■□□□□ 0.02
CPSF7-221	ENST00000543545	GRWD1	Q9BQ67	446 aa	Known RBP eCLIP	15.17	■□□□□ 0.02	2e-8	■■□□□ 13
CPSF7-221	ENST00000543545	ANKRD50	Q9ULJ7	1429 aa		15.16	■□□□□ 0.02
CPSF7-221	ENST00000543545	INO80	Q9ULG1	1556 aa	Predicted RBP	15.15	■□□□□ 0.02
CPSF7-221	ENST00000543545	KIDINS220	Q9ULH0	1771 aa		15.14	■□□□□ 0.01
CPSF7-221	ENST00000543545	TRIM52	Q96A61	297 aa		15.14	■□□□□ 0.01
CPSF7-221	ENST00000543545	ESF1	Q9H501	851 aa	Known RBP	15.14	■□□□□ 0.01
CPSF7-221	ENST00000543545	DIP2C	Q9Y2E4	1556 aa		15.14	■□□□□ 0.01
CPSF7-221	ENST00000543545	ARHGEF40	Q8TER5	1519 aa		15.13	■□□□□ 0.01
CPSF7-221	ENST00000543545	DUOX2	Q9NRD8	1548 aa		15.13	■□□□□ 0.01
CPSF7-221	ENST00000543545	HFM1	A2PYH4	1435 aa		15.13	■□□□□ 0.01
CPSF7-221	ENST00000543545	NAIP	Q13075	1403 aa		15.12	■□□□□ 0.01
CPSF7-221	ENST00000543545	SETD5	Q9C0A6	1442 aa		15.12	■□□□□ 0.01
CPSF7-221	ENST00000543545	ABCA6	Q8N139	1617 aa		15.12	■□□□□ 0.01
CPSF7-221	ENST00000543545	ERBIN	Q96RT1	1412 aa		15.11	■□□□□ 0.01
CPSF7-221	ENST00000543545	CROCC2	H7BZ55	1655 aa		15.11	■□□□□ 0.01
CPSF7-221	ENST00000543545	PLXNC1	O60486	1568 aa		15.1	■□□□□ 0.01
CPSF7-221	ENST00000543545	WASHC2C	Q9Y4E1	1318 aa		15.08	■□□□□ 0
CPSF7-221	ENST00000543545	PPP6R1	Q9UPN7	881 aa		15.07	■□□□□ 0
CPSF7-221	ENST00000543545	NUP155	O75694	1391 aa		15.07	■□□□□ 0
CPSF7-221	ENST00000543545	KANK1	Q14678	1352 aa		15.07	■□□□□ 0
CPSF7-221	ENST00000543545	RAB3GAP2	Q9H2M9	1393 aa		15.07	■□□□□ 0

Retrieved 100 of 20,778 RNA–protein pairs in 48.9 ms