RNA–Protein interactions for RNA: ENST00000543233.2

CDH4-201, Transcript of cadherin 4, humanhuman

TSL 2 BASIC

Gene CDH4, Length 3,117 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH4-201ENST00000543233 THOC2Q8NI27 1593 aaKnown RBP15.4■□□□□ 0.06
CDH4-201ENST00000543233 SAMD9Q5K651 1589 aa15.39■□□□□ 0.05
CDH4-201ENST00000543233 MAGI3Q5TCQ9 1506 aa15.39■□□□□ 0.05
CDH4-201ENST00000543233 ZBTB47Q9UFB7 747 aaPredicted RBP15.37■□□□□ 0.05
CDH4-201ENST00000543233 IQGAP2Q13576 1575 aa15.36■□□□□ 0.05
CDH4-201ENST00000543233 NAIPQ13075 1403 aa15.36■□□□□ 0.05
CDH4-201ENST00000543233 WDR62O43379 1518 aa15.36■□□□□ 0.05
CDH4-201ENST00000543233 LRRIQ1Q96JM4 1722 aa15.36■□□□□ 0.05
CDH4-201ENST00000543233 ANP32AP39687 249 aaKnown RBP15.35■□□□□ 0.05
CDH4-201ENST00000543233 EPRSP07814 1512 aaKnown RBP15.34■□□□□ 0.05
CDH4-201ENST00000543233 NEFMP07197 916 aa15.34■□□□□ 0.05
CDH4-201ENST00000543233 HFM1A2PYH4 1435 aa15.34■□□□□ 0.05
CDH4-201ENST00000543233 PBRM1Q86U86 1689 aa15.33■□□□□ 0.04
CDH4-201ENST00000543233 RSPH6AQ9H0K4 717 aa15.32■□□□□ 0.04
CDH4-201ENST00000543233 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP15.32■□□□□ 0.04
CDH4-201ENST00000543233 ADAMTS12P58397 1594 aa15.32■□□□□ 0.04
CDH4-201ENST00000543233 EHBP1L1Q8N3D4 1523 aa15.32■□□□□ 0.04
CDH4-201ENST00000543233 IFT140Q96RY7 1462 aa15.31■□□□□ 0.04
CDH4-201ENST00000543233 CNGB1Q14028 1251 aaPredicted RBP15.31■□□□□ 0.04
CDH4-201ENST00000543233 SUPT6HQ7KZ85 1726 aaKnown RBP15.31■□□□□ 0.04
CDH4-201ENST00000543233 UACAQ9BZF9 1416 aa15.31■□□□□ 0.04
CDH4-201ENST00000543233 LAS1LQ9Y4W2 734 aaKnown RBP15.3■□□□□ 0.04
CDH4-201ENST00000543233 PTPN23Q9H3S7 1636 aa15.29■□□□□ 0.04
CDH4-201ENST00000543233 MPHOSPH9Q99550 1183 aa15.29■□□□□ 0.04
CDH4-201ENST00000543233 JPH4Q96JJ6 628 aa15.28■□□□□ 0.04
CDH4-201ENST00000543233 CFDP1Q9UEE9 299 aaPredicted RBP15.28■□□□□ 0.04
CDH4-201ENST00000543233 UGGT2Q9NYU1 1516 aa15.28■□□□□ 0.04
CDH4-201ENST00000543233 ANP32CO43423 234 aa15.27■□□□□ 0.04
CDH4-201ENST00000543233 ZNF326Q5BKZ1 582 aaKnown RBP15.26■□□□□ 0.03
CDH4-201ENST00000543233 HECW1Q76N89 1606 aa15.26■□□□□ 0.03
CDH4-201ENST00000543233 PRG4Q92954 1404 aaPredicted RBP15.26■□□□□ 0.03
CDH4-201ENST00000543233 SLC4A1APQ9BWU0 796 aaKnown RBP15.26■□□□□ 0.03
CDH4-201ENST00000543233 B4GALNT3Q6L9W6 998 aa15.25■□□□□ 0.03
CDH4-201ENST00000543233 GRIN2AQ12879 1464 aa15.25■□□□□ 0.03
CDH4-201ENST00000543233 KIAA0586Q9BVV6 1533 aa15.24■□□□□ 0.03
CDH4-201ENST00000543233 PLB1Q6P1J6 1458 aa15.24■□□□□ 0.03
CDH4-201ENST00000543233 IPO9Q96P70 1041 aaKnown RBP15.24■□□□□ 0.03
CDH4-201ENST00000543233 L3MBTL2Q969R5 705 aa15.23■□□□□ 0.03
CDH4-201ENST00000543233 DISP1Q96F81 1524 aa15.23■□□□□ 0.03
CDH4-201ENST00000543233 PDE4CQ08493 712 aa15.23■□□□□ 0.03
CDH4-201ENST00000543233 POLR3GLQ9BT43 218 aa15.23■□□□□ 0.03
CDH4-201ENST00000543233 NPM2Q86SE8 214 aaKnown RBP15.21■□□□□ 0.03
CDH4-201ENST00000543233 EIF4G3O43432 1585 aaKnown RBP15.21■□□□□ 0.03
CDH4-201ENST00000543233 HSPA5P11021 654 aaKnown RBP15.21■□□□□ 0.03
CDH4-201ENST00000543233 NUP153P49790 1475 aaKnown RBP15.21■□□□□ 0.03
CDH4-201ENST00000543233 KDM6BO15054 1643 aa15.21■□□□□ 0.02
CDH4-201ENST00000543233 C11orf95C9JLR9 678 aaPredicted RBP15.2■□□□□ 0.02
CDH4-201ENST00000543233 RBM10P98175 930 aaKnown RBP15.19■□□□□ 0.02
CDH4-201ENST00000543233 PPP4R2Q9NY27 417 aa15.18■□□□□ 0.02
CDH4-201ENST00000543233 PLEKHD1A6NEE1 506 aa15.18■□□□□ 0.02
CDH4-201ENST00000543233 KIAA0556O60303 1618 aa15.17■□□□□ 0.02
CDH4-201ENST00000543233 ARHGEF11O15085 1522 aa15.16■□□□□ 0.02
CDH4-201ENST00000543233 WASHC2AQ641Q2 1341 aa15.16■□□□□ 0.02
CDH4-201ENST00000543233 ABCC5O15440 1437 aa15.15■□□□□ 0.02
CDH4-201ENST00000543233 DAPK1P53355 1430 aa15.15■□□□□ 0.02
CDH4-201ENST00000543233 MIA2Q96PC5 1412 aa15.15■□□□□ 0.02
CDH4-201ENST00000543233 EIF4G2P78344 907 aaKnown RBP eCLIP15.15■□□□□ 0.02
CDH4-201ENST00000543233 HSP90AA2PQ14568 343 aaPredicted RBP15.14■□□□□ 0.01
CDH4-201ENST00000543233 TCOF1Q13428 1488 aaKnown RBP15.13■□□□□ 0.01
CDH4-201ENST00000543233 HNRNPUQ00839 825 aaKnown RBP eCLIP15.13■□□□□ 0.01
CDH4-201ENST00000543233 CARMIL2Q6F5E8 1435 aa15.13■□□□□ 0.01
CDH4-201ENST00000543233 SYNJ2O15056 1496 aa15.13■□□□□ 0.01
CDH4-201ENST00000543233 NBPF8Q3BBV2 869 aa15.12■□□□□ 0.01
CDH4-201ENST00000543233 DENND4BO75064 1496 aaPredicted RBP15.12■□□□□ 0.01
CDH4-201ENST00000543233 HNRNPMP52272 730 aaKnown RBP eCLIP15.12■□□□□ 0.01
CDH4-201ENST00000543233 WASHC2CQ9Y4E1 1318 aa15.12■□□□□ 0.01
CDH4-201ENST00000543233 FGD1P98174 961 aa15.12■□□□□ 0.01
CDH4-201ENST00000543233 CEP170Q5SW79 1584 aa15.11■□□□□ 0.01
CDH4-201ENST00000543233 PKD2Q13563 968 aa15.1■□□□□ 0.01
CDH4-201ENST00000543233 RAPGEF6Q8TEU7 1601 aa15.1■□□□□ 0.01
CDH4-201ENST00000543233 AEBP2Q6ZN18 517 aaPredicted RBP15.1■□□□□ 0.01
CDH4-201ENST00000543233 TROQ12816 1431 aaPredicted RBP15.1■□□□□ 0.01
CDH4-201ENST00000543233 AAMPQ13685 434 aa15.1■□□□□ 0.01
CDH4-201ENST00000543233 SENP3-EIF4A1A0A087X0R7 540 aa15.09■□□□□ 0.01
CDH4-201ENST00000543233 GSE1Q14687 1217 aa15.09■□□□□ 0.01
CDH4-201ENST00000543233 MAGI1Q96QZ7 1491 aaPredicted RBP15.09■□□□□ 0.01
CDH4-201ENST00000543233 KDM2AQ9Y2K7 1162 aa15.09■□□□□ 0.01
CDH4-201ENST00000543233 NAP1L5Q96NT1 182 aaPredicted RBP15.08■□□□□ 0
CDH4-201ENST00000543233 BCL11BQ9C0K0 894 aaPredicted RBP15.08■□□□□ 0
CDH4-201ENST00000543233 USP35Q9P2H5 1018 aa15.08■□□□□ 0
CDH4-201ENST00000543233 PDIA4P13667 645 aaKnown RBP15.07■□□□□ 0
CDH4-201ENST00000543233 TSPY4P0CV99 314 aa15.07■□□□□ 0
CDH4-201ENST00000543233 TSPY10P0CW01 314 aa15.07■□□□□ 0
CDH4-201ENST00000543233 CAMSAP2Q08AD1 1489 aa15.05■□□□□ 0
CDH4-201ENST00000543233 GRWD1Q9BQ67 446 aaKnown RBP eCLIP15.05■□□□□ -0
CDH4-201ENST00000543233 CCDC184Q52MB2 194 aa15.05■□□□□ -0
CDH4-201ENST00000543233 GPATCH8Q9UKJ3 1502 aaKnown RBP15.05■□□□□ -0
CDH4-201ENST00000543233 ANKRD30BQ9BXX2 1392 aa15.05■□□□□ -0
CDH4-201ENST00000543233 FAM9BQ8IZU0 186 aa15.04■□□□□ -0
CDH4-201ENST00000543233 FAM43AQ8N2R8 423 aa15.04■□□□□ -0
CDH4-201ENST00000543233 KIF14Q15058 1648 aa15.04■□□□□ -0
CDH4-201ENST00000543233 CCER2I3L3R5 266 aa15.03■□□□□ -0
CDH4-201ENST00000543233 KDM5BQ9UGL1 1544 aa15.03■□□□□ -0
CDH4-201ENST00000543233 PTPRGP23470 1445 aa15.03■□□□□ -0
CDH4-201ENST00000543233 NUP155O75694 1391 aa15.02■□□□□ -0
CDH4-201ENST00000543233 HSP90AA1P07900 732 aaKnown RBP15.02■□□□□ -0
CDH4-201ENST00000543233 PPM1GO15355 546 aaPredicted RBP15.02□□□□□ -0.01
CDH4-201ENST00000543233 FRAT1Q92837 279 aaPredicted RBP15.02□□□□□ -0.01
CDH4-201ENST00000543233 AKNAQ7Z591 1439 aa15.02□□□□□ -0.01
CDH4-201ENST00000543233 NCOA1Q15788 1441 aa15.01□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 66.7 ms