RNA–Protein interactions for RNA: ENST00000542877.5

TNC-212, Transcript of tenascin C, humanhuman

TSL 1 (best) BASIC

Gene TNC, Length 5,517 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TNC-212ENST00000542877 RCAN3Q9UKA8 241 aa16.7■□□□□ 0.26
TNC-212ENST00000542877 RALBP1Q15311 655 aa16.69■□□□□ 0.26
TNC-212ENST00000542877 ARID4BQ4LE39 1312 aaPredicted RBP16.67■□□□□ 0.26
TNC-212ENST00000542877 IPO8O15397 1037 aaKnown RBP16.67■□□□□ 0.26
TNC-212ENST00000542877 CUX2O14529 1486 aa16.67■□□□□ 0.26
TNC-212ENST00000542877 GBP4Q96PP9 640 aa16.66■□□□□ 0.26
TNC-212ENST00000542877 RAB3GAP2Q9H2M9 1393 aa16.65■□□□□ 0.26
TNC-212ENST00000542877 SPRYD3Q8NCJ5 442 aa16.65■□□□□ 0.26
TNC-212ENST00000542877 TSHZ2Q9NRE2 1034 aa16.65■□□□□ 0.26
TNC-212ENST00000542877 RWDD1Q9H446 243 aaPredicted RBP16.64■□□□□ 0.25
TNC-212ENST00000542877 PKD2Q13563 968 aa16.64■□□□□ 0.25
TNC-212ENST00000542877 KANK4Q5T7N3 995 aaPredicted RBP16.63■□□□□ 0.25
TNC-212ENST00000542877 SRPK2P78362 688 aaKnown RBP16.62■□□□□ 0.25
TNC-212ENST00000542877 NAP1L2Q9ULW6 460 aaPredicted RBP16.62■□□□□ 0.25
TNC-212ENST00000542877 EIF4G1Q04637 1599 aaKnown RBP16.62■□□□□ 0.25
TNC-212ENST00000542877 CECR2Q9BXF3 1484 aa16.61■□□□□ 0.25
TNC-212ENST00000542877 IPO9Q96P70 1041 aaKnown RBP16.6■□□□□ 0.25
TNC-212ENST00000542877 LMOD2Q6P5Q4 547 aa16.59■□□□□ 0.25
TNC-212ENST00000542877 MPHOSPH9Q99550 1183 aa16.59■□□□□ 0.25
TNC-212ENST00000542877 CALD1Q05682 793 aaKnown RBP16.59■□□□□ 0.25
TNC-212ENST00000542877 HDGFP51858 240 aaKnown RBP16.59■□□□□ 0.25
TNC-212ENST00000542877 DRC7Q8IY82 874 aa16.58■□□□□ 0.25
TNC-212ENST00000542877 PMFBP1Q8TBY8 1022 aa16.58■□□□□ 0.25
TNC-212ENST00000542877 ROCK2O75116 1388 aaKnown RBP16.58■□□□□ 0.24
TNC-212ENST00000542877 TAOK2Q9UL54 1235 aa16.57■□□□□ 0.24
TNC-212ENST00000542877 RTF1Q92541 710 aaKnown RBP16.56■□□□□ 0.24
TNC-212ENST00000542877 PDE3BQ13370 1112 aa16.56■□□□□ 0.24
TNC-212ENST00000542877 FOXD1Q16676 465 aa16.56■□□□□ 0.24
TNC-212ENST00000542877 HDGFL2Q7Z4V5 671 aaPredicted RBP16.56■□□□□ 0.24
TNC-212ENST00000542877 SLKQ9H2G2 1235 aaPredicted RBP16.55■□□□□ 0.24
TNC-212ENST00000542877 KIAA2012Q0VF49 1180 aa16.55■□□□□ 0.24
TNC-212ENST00000542877 KIAA1211Q6ZU35 1233 aa16.55■□□□□ 0.24
TNC-212ENST00000542877 FMN1Q68DA7 1419 aa16.54■□□□□ 0.24
TNC-212ENST00000542877 ITPRIPQ8IWB1 547 aa16.54■□□□□ 0.24
TNC-212ENST00000542877 U2AF1L5P0DN76 240 aaPredicted RBP16.53■□□□□ 0.24
TNC-212ENST00000542877 U2AF1Q01081 240 aaKnown RBP eCLIP16.53■□□□□ 0.24
TNC-212ENST00000542877 GOLGA2Q08379 1002 aa16.53■□□□□ 0.24
TNC-212ENST00000542877 SYAP1Q96A49 352 aaPredicted RBP16.53■□□□□ 0.24
TNC-212ENST00000542877 GOLGA6L3A6NEY3 463 aa16.52■□□□□ 0.23
TNC-212ENST00000542877 GZF1Q9H116 711 aaPredicted RBP16.51■□□□□ 0.23
TNC-212ENST00000542877 NUP155O75694 1391 aa16.51■□□□□ 0.23
TNC-212ENST00000542877 ANKRD30AQ9BXX3 1397 aa16.51■□□□□ 0.23
TNC-212ENST00000542877 CCDC88BA6NC98 1476 aa16.5■□□□□ 0.23
TNC-212ENST00000542877 NLRP13Q86W25 1043 aa16.5■□□□□ 0.23
TNC-212ENST00000542877 ERCC6Q03468 1493 aa16.5■□□□□ 0.23
TNC-212ENST00000542877 TULP1O00294 542 aaPredicted RBP16.5■□□□□ 0.23
TNC-212ENST00000542877 SAFB2Q14151 953 aaKnown RBP eCLIP16.5■□□□□ 0.23
TNC-212ENST00000542877 ABCC8Q09428 1581 aa16.5■□□□□ 0.23
TNC-212ENST00000542877 EIF3AQ14152 1382 aaKnown RBP16.5■□□□□ 0.23
TNC-212ENST00000542877 HTATSF1O43719 755 aaKnown RBP16.49■□□□□ 0.23
TNC-212ENST00000542877 APBB1O00213 710 aa16.49■□□□□ 0.23
TNC-212ENST00000542877 NPHP1O15259 732 aa16.48■□□□□ 0.23
TNC-212ENST00000542877 PHLDB1Q86UU1 1377 aa16.47■□□□□ 0.23
TNC-212ENST00000542877 L3MBTL2Q969R5 705 aa16.47■□□□□ 0.23
TNC-212ENST00000542877 CHMP4AQ9BY43 222 aa16.47■□□□□ 0.23
TNC-212ENST00000542877 SOX12O15370 315 aa16.47■□□□□ 0.23
TNC-212ENST00000542877 MFAP1P55081 439 aaKnown RBP16.47■□□□□ 0.23
TNC-212ENST00000542877 CARMIL2Q6F5E8 1435 aa16.46■□□□□ 0.23
TNC-212ENST00000542877 GNL2Q13823 731 aaKnown RBP16.46■□□□□ 0.23
TNC-212ENST00000542877 USP35Q9P2H5 1018 aa16.46■□□□□ 0.23
TNC-212ENST00000542877 SMC4Q9NTJ3 1288 aa16.45■□□□□ 0.22
TNC-212ENST00000542877 STK26Q9P289 416 aa16.44■□□□□ 0.22
TNC-212ENST00000542877 CENPJQ9HC77 1338 aaPredicted RBP16.44■□□□□ 0.22
TNC-212ENST00000542877 MROH2BQ7Z745 1585 aa16.43■□□□□ 0.22
TNC-212ENST00000542877 HMMRO75330 724 aa16.43■□□□□ 0.22
TNC-212ENST00000542877 GGT6Q6P531 493 aa16.42■□□□□ 0.22
TNC-212ENST00000542877 KIF15Q9NS87 1388 aa16.41■□□□□ 0.22
TNC-212ENST00000542877 STK31Q9BXU1 1019 aa16.41■□□□□ 0.22
TNC-212ENST00000542877 CSPP1Q1MSJ5 1256 aa16.4■□□□□ 0.22
TNC-212ENST00000542877 HDAC5Q9UQL6 1122 aa16.4■□□□□ 0.22
TNC-212ENST00000542877 MYBBP1AQ9BQG0 1328 aaKnown RBP16.39■□□□□ 0.21
TNC-212ENST00000542877 EFCAB2Q5VUJ9 269 aa16.39■□□□□ 0.21
TNC-212ENST00000542877 TPM4P67936 248 aa16.39■□□□□ 0.21
TNC-212ENST00000542877 SPAG9O60271 1321 aaKnown RBP16.39■□□□□ 0.21
TNC-212ENST00000542877 TRHP20396 242 aaPredicted RBP16.38■□□□□ 0.21
TNC-212ENST00000542877 TERF2IPQ9NYB0 399 aa16.38■□□□□ 0.21
TNC-212ENST00000542877 CENPQQ7L2Z9 268 aaPredicted RBP16.38■□□□□ 0.21
TNC-212ENST00000542877 GPATCH3Q96I76 525 aa16.37■□□□□ 0.21
TNC-212ENST00000542877 DHX57Q6P158 1386 aaKnown RBP16.37■□□□□ 0.21
TNC-212ENST00000542877 CLUAP1Q96AJ1 413 aa16.37■□□□□ 0.21
TNC-212ENST00000542877 DDX11L8A8MPP1 907 aa16.36■□□□□ 0.21
TNC-212ENST00000542877 LMOD3Q0VAK6 560 aa16.36■□□□□ 0.21
TNC-212ENST00000542877 RSPH4AQ5TD94 716 aa16.36■□□□□ 0.21
TNC-212ENST00000542877 CCDC146Q8IYE0 955 aa16.36■□□□□ 0.21
TNC-212ENST00000542877 SMARCA2P51531 1590 aa16.35■□□□□ 0.21
TNC-212ENST00000542877 ST18O60284 1047 aa16.35■□□□□ 0.21
TNC-212ENST00000542877 MLECQ14165 292 aa16.35■□□□□ 0.21
TNC-212ENST00000542877 FAM161AQ3B820 660 aa16.35■□□□□ 0.21
TNC-212ENST00000542877 TRIM6-TRIM34B2RNG4 842 aa16.35■□□□□ 0.21
TNC-212ENST00000542877 PHF14O94880 888 aa16.35■□□□□ 0.21
TNC-212ENST00000542877 PDE4AP27815 886 aa16.35■□□□□ 0.21
TNC-212ENST00000542877 ZBED9Q6R2W3 1325 aa16.34■□□□□ 0.21
TNC-212ENST00000542877 ZBTB4Q9P1Z0 1013 aaPredicted RBP16.34■□□□□ 0.21
TNC-212ENST00000542877 CCDC34Q96HJ3 373 aa16.34■□□□□ 0.21
TNC-212ENST00000542877 RAPGEF2Q9Y4G8 1499 aa16.33■□□□□ 0.2
TNC-212ENST00000542877 CCDC18Q5T9S5 1454 aa16.32■□□□□ 0.2
TNC-212ENST00000542877 PRKRIP1Q9H875 184 aaPredicted RBP16.32■□□□□ 0.2
TNC-212ENST00000542877 RRP1P56182 461 aaKnown RBP16.31■□□□□ 0.2
TNC-212ENST00000542877 FANCIQ9NVI1 1328 aa16.31■□□□□ 0.2
TNC-212ENST00000542877 GSE1Q14687 1217 aa16.29■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 11 ms