RNA–Protein interactions for RNA: ENST00000542700.6

CHMP4A-209, Transcript of charged multivesicular body protein 4A, humanhuman

TSL 3

Gene CHMP4A, Length 847 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4A-209ENST00000542700 ATP10BO94823 1461 aa13.93□□□□□ -0.18
CHMP4A-209ENST00000542700 MAGI2Q86UL8 1455 aa13.9□□□□□ -0.18
CHMP4A-209ENST00000542700 SETD1BQ9UPS6 1966 aaKnown RBP13.89□□□□□ -0.19
CHMP4A-209ENST00000542700 GOLGA3Q08378 1498 aa13.89□□□□□ -0.19
CHMP4A-209ENST00000542700 HECW1Q76N89 1606 aa13.89□□□□□ -0.19
CHMP4A-209ENST00000542700 C9orf84Q5VXU9 1444 aa13.87□□□□□ -0.19
CHMP4A-209ENST00000542700 CAMSAP1Q5T5Y3 1602 aa13.86□□□□□ -0.19
CHMP4A-209ENST00000542700 CFAP74Q9C0B2 1584 aa13.86□□□□□ -0.19
CHMP4A-209ENST00000542700 NCKAP5LQ9HCH0 1330 aa13.86□□□□□ -0.19
CHMP4A-209ENST00000542700 RAPGEF2Q9Y4G8 1499 aa13.86□□□□□ -0.19
CHMP4A-209ENST00000542700 RGS17Q9UGC6 210 aaPredicted RBP13.85□□□□□ -0.19
CHMP4A-209ENST00000542700 ATP10AO60312 1499 aa13.85□□□□□ -0.19
CHMP4A-209ENST00000542700 TOM1O60784 492 aa13.84□□□□□ -0.19
CHMP4A-209ENST00000542700 SENP3Q9H4L4 574 aaPredicted RBP13.84□□□□□ -0.19
CHMP4A-209ENST00000542700 C3P01024 1663 aa13.84□□□□□ -0.19
CHMP4A-209ENST00000542700 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.82□□□□□ -0.2
CHMP4A-209ENST00000542700 HNRNPUL2Q1KMD3 747 aaKnown RBP13.82□□□□□ -0.2
CHMP4A-209ENST00000542700 TRAPPC8Q9Y2L5 1435 aa13.81□□□□□ -0.2
CHMP4A-209ENST00000542700 CTTNBP2Q8WZ74 1663 aa13.79□□□□□ -0.2
CHMP4A-209ENST00000542700 SETD1AO15047 1707 aaKnown RBP13.76□□□□□ -0.21
CHMP4A-209ENST00000542700 SCAPERQ9BY12 1400 aa13.76□□□□□ -0.21
CHMP4A-209ENST00000542700 FAM9AQ8IZU1 332 aaPredicted RBP13.76□□□□□ -0.21
CHMP4A-209ENST00000542700 SUPT5HO00267 1087 aaKnown RBP13.75□□□□□ -0.21
CHMP4A-209ENST00000542700 POTEAQ6S8J7 498 aa13.75□□□□□ -0.21
CHMP4A-209ENST00000542700 ESF1Q9H501 851 aaKnown RBP13.75□□□□□ -0.21
CHMP4A-209ENST00000542700 P3H3Q8IVL6 736 aa13.74□□□□□ -0.21
CHMP4A-209ENST00000542700 PPP6R1Q9UPN7 881 aa13.74□□□□□ -0.21
CHMP4A-209ENST00000542700 PKD2Q13563 968 aa13.73□□□□□ -0.21
CHMP4A-209ENST00000542700 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP13.73□□□□□ -0.21
CHMP4A-209ENST00000542700 PLA2R1Q13018 1463 aa13.72□□□□□ -0.21
CHMP4A-209ENST00000542700 RAPGEF6Q8TEU7 1601 aa13.72□□□□□ -0.21
CHMP4A-209ENST00000542700 ALKQ9UM73 1620 aa13.72□□□□□ -0.21
CHMP4A-209ENST00000542700 CPS1P31327 1500 aa13.71□□□□□ -0.21
CHMP4A-209ENST00000542700 TCOF1Q13428 1488 aaKnown RBP13.71□□□□□ -0.21
CHMP4A-209ENST00000542700 PTPRKQ15262 1439 aa13.7□□□□□ -0.22
CHMP4A-209ENST00000542700 NPATQ14207 1427 aa13.67□□□□□ -0.22
CHMP4A-209ENST00000542700 NUP153P49790 1475 aaKnown RBP13.67□□□□□ -0.22
CHMP4A-209ENST00000542700 DIP2CQ9Y2E4 1556 aa13.66□□□□□ -0.22
CHMP4A-209ENST00000542700 PLEKHD1A6NEE1 506 aa13.66□□□□□ -0.22
CHMP4A-209ENST00000542700 MYT1LQ9UL68 1186 aa13.66□□□□□ -0.22
CHMP4A-209ENST00000542700 SUPT6HQ7KZ85 1726 aaKnown RBP13.66□□□□□ -0.22
CHMP4A-209ENST00000542700 CNTLNQ9NXG0 1405 aa13.65□□□□□ -0.22
CHMP4A-209ENST00000542700 SHANK2Q9UPX8 1470 aa13.65□□□□□ -0.22
CHMP4A-209ENST00000542700 ZNF142P52746 1687 aaPredicted RBP13.65□□□□□ -0.22
CHMP4A-209ENST00000542700 MYO3AQ8NEV4 1616 aa13.64□□□□□ -0.23
CHMP4A-209ENST00000542700 AGLP35573 1532 aa13.64□□□□□ -0.23
CHMP4A-209ENST00000542700 REREQ9P2R6 1566 aa13.63□□□□□ -0.23
CHMP4A-209ENST00000542700 CEP170BQ9Y4F5 1589 aaPredicted RBP13.63□□□□□ -0.23
CHMP4A-209ENST00000542700 ZNF518AQ6AHZ1 1483 aa13.62□□□□□ -0.23
CHMP4A-209ENST00000542700 UPF1Q92900 1129 aaKnown RBP eCLIP13.62□□□□□ -0.23
CHMP4A-209ENST00000542700 ABCA6Q8N139 1617 aa13.61□□□□□ -0.23
CHMP4A-209ENST00000542700 PLCH2O75038 1416 aa13.6□□□□□ -0.23
CHMP4A-209ENST00000542700 KDM5CP41229 1560 aa13.6□□□□□ -0.23
CHMP4A-209ENST00000542700 AFAP1Q8N556 730 aa13.59□□□□□ -0.23
CHMP4A-209ENST00000542700 MROH2AA6NES4 1674 aa13.58□□□□□ -0.24
CHMP4A-209ENST00000542700 ZMYM3Q14202 1370 aa13.58□□□□□ -0.24
CHMP4A-209ENST00000542700 VWDEQ8N2E2 1590 aa13.56□□□□□ -0.24
CHMP4A-209ENST00000542700 NEURL4Q96JN8 1562 aa13.56□□□□□ -0.24
CHMP4A-209ENST00000542700 RNF17Q9BXT8 1623 aaKnown RBP13.55□□□□□ -0.24
CHMP4A-209ENST00000542700 EFCAB2Q5VUJ9 269 aa13.55□□□□□ -0.24
CHMP4A-209ENST00000542700 SRCAPQ6ZRS2 3230 aa13.55□□□□□ -0.24
CHMP4A-209ENST00000542700 POLR1AO95602 1720 aaPredicted RBP13.54□□□□□ -0.24
CHMP4A-209ENST00000542700 SAMD9Q5K651 1589 aa13.54□□□□□ -0.24
CHMP4A-209ENST00000542700 MYO5CQ9NQX4 1742 aa13.51□□□□□ -0.25
CHMP4A-209ENST00000542700 MLH3Q9UHC1 1453 aa13.51□□□□□ -0.25
CHMP4A-209ENST00000542700 DNMT1P26358 1616 aaKnown RBP13.5□□□□□ -0.25
CHMP4A-209ENST00000542700 LRRC7Q96NW7 1537 aa13.49□□□□□ -0.25
CHMP4A-209ENST00000542700 A2ML1A8K2U0 1454 aa13.49□□□□□ -0.25
CHMP4A-209ENST00000542700 TRIM52Q96A61 297 aa13.49□□□□□ -0.25
CHMP4A-209ENST00000542700 CLTCQ00610 1675 aaKnown RBP13.49□□□□□ -0.25
CHMP4A-209ENST00000542700 ARHGAP5Q13017 1502 aa13.48□□□□□ -0.25
CHMP4A-209ENST00000542700 CDK13Q14004 1512 aaKnown RBP13.48□□□□□ -0.25
CHMP4A-209ENST00000542700 SYNMO15061 1565 aa13.45□□□□□ -0.26
CHMP4A-209ENST00000542700 PRXQ9BXM0 1461 aa13.44□□□□□ -0.26
CHMP4A-209ENST00000542700 STRCP1A6NGW2 1772 aa13.44□□□□□ -0.26
CHMP4A-209ENST00000542700 NPHP4O75161 1426 aaPredicted RBP13.43□□□□□ -0.26
CHMP4A-209ENST00000542700 RANGAP1P46060 587 aaPredicted RBP13.42□□□□□ -0.26
CHMP4A-209ENST00000542700 KIDINS220Q9ULH0 1771 aa13.42□□□□□ -0.26
CHMP4A-209ENST00000542700 ANKLE2Q86XL3 938 aa13.41□□□□□ -0.26
CHMP4A-209ENST00000542700 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP13.41□□□□□ -0.26
CHMP4A-209ENST00000542700 KIF14Q15058 1648 aa13.4□□□□□ -0.26
CHMP4A-209ENST00000542700 FAM135BQ49AJ0 1406 aa13.39□□□□□ -0.27
CHMP4A-209ENST00000542700 ITSN2Q9NZM3 1697 aa13.38□□□□□ -0.27
CHMP4A-209ENST00000542700 ABCC1P33527 1531 aa13.38□□□□□ -0.27
CHMP4A-209ENST00000542700 IQGAP1P46940 1657 aa13.37□□□□□ -0.27
CHMP4A-209ENST00000542700 MED14O60244 1454 aa13.37□□□□□ -0.27
CHMP4A-209ENST00000542700 DEPDC5O75140 1603 aa13.35□□□□□ -0.27
CHMP4A-209ENST00000542700 GGT6Q6P531 493 aa13.35□□□□□ -0.27
CHMP4A-209ENST00000542700 TNRQ92752 1358 aa13.34□□□□□ -0.27
CHMP4A-209ENST00000542700 ZNF772Q68DY9 489 aaPredicted RBP13.34□□□□□ -0.27
CHMP4A-209ENST00000542700 ROBO1Q9Y6N7 1651 aa13.34□□□□□ -0.27
CHMP4A-209ENST00000542700 SETBP1Q9Y6X0 1596 aa13.33□□□□□ -0.28
CHMP4A-209ENST00000542700 MEX3CQ5U5Q3 659 aaKnown RBP13.32□□□□□ -0.28
CHMP4A-209ENST00000542700 CDC42BPBQ9Y5S2 1711 aa13.31□□□□□ -0.28
CHMP4A-209ENST00000542700 RXRBP28702 533 aa13.31□□□□□ -0.28
CHMP4A-209ENST00000542700 THEMISQ8N1K5 641 aaPredicted RBP13.31□□□□□ -0.28
CHMP4A-209ENST00000542700 ZRANB1Q9UGI0 708 aa13.31□□□□□ -0.28
CHMP4A-209ENST00000542700 LRP6O75581 1613 aa13.31□□□□□ -0.28
CHMP4A-209ENST00000542700 JCADQ9P266 1359 aa13.31□□□□□ -0.28
CHMP4A-209ENST00000542700 XIRP1Q702N8 1843 aaKnown RBP13.3□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 143 ms