RNA–Protein interactions for RNA: ENST00000541817.5

CHFR-220, Transcript of checkpoint with forkhead and ring finger domains, humanhuman

TSL 5

Gene CHFR, Length 758 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHFR-220ENST00000541817 ZMYM4Q5VZL5 1548 aa17.01■□□□□ 0.31
CHFR-220ENST00000541817 ARHGEF12Q9NZN5 1544 aa17.01■□□□□ 0.31
CHFR-220ENST00000541817 RAPGEF6Q8TEU7 1601 aa16.99■□□□□ 0.31
CHFR-220ENST00000541817 CFAP74Q9C0B2 1584 aa16.94■□□□□ 0.3
CHFR-220ENST00000541817 IQSEC2Q5JU85 1478 aa16.94■□□□□ 0.3
CHFR-220ENST00000541817 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP16.94■□□□□ 0.3
CHFR-220ENST00000541817 ATP10AO60312 1499 aa16.93■□□□□ 0.3
CHFR-220ENST00000541817 MAGI2Q86UL8 1455 aa16.93■□□□□ 0.3
CHFR-220ENST00000541817 SETD1BQ9UPS6 1966 aaKnown RBP16.93■□□□□ 0.3
CHFR-220ENST00000541817 PLEKHD1A6NEE1 506 aa16.93■□□□□ 0.3
CHFR-220ENST00000541817 SCAPERQ9BY12 1400 aa16.93■□□□□ 0.3
CHFR-220ENST00000541817 MED1Q15648 1581 aaPredicted RBP16.93■□□□□ 0.3
CHFR-220ENST00000541817 ZNF335Q9H4Z2 1342 aaPredicted RBP16.93■□□□□ 0.3
CHFR-220ENST00000541817 NUP153P49790 1475 aaKnown RBP16.93■□□□□ 0.3
CHFR-220ENST00000541817 RANGAP1P46060 587 aaPredicted RBP16.92■□□□□ 0.3
CHFR-220ENST00000541817 C9orf84Q5VXU9 1444 aa16.92■□□□□ 0.3
CHFR-220ENST00000541817 SCAF1Q9H7N4 1312 aaKnown RBP16.91■□□□□ 0.3
CHFR-220ENST00000541817 HSPA1LP34931 641 aa16.9■□□□□ 0.3
CHFR-220ENST00000541817 C3P01024 1663 aa16.89■□□□□ 0.29
CHFR-220ENST00000541817 NCKAP5LQ9HCH0 1330 aa16.89■□□□□ 0.29
CHFR-220ENST00000541817 NCOA1Q15788 1441 aa16.87■□□□□ 0.29
CHFR-220ENST00000541817 PIP4K2BP78356 416 aa16.87■□□□□ 0.29
CHFR-220ENST00000541817 MYT1LQ9UL68 1186 aa16.86■□□□□ 0.29
CHFR-220ENST00000541817 PRXQ9BXM0 1461 aa16.85■□□□□ 0.29
CHFR-220ENST00000541817 SAMD9Q5K651 1589 aa16.84■□□□□ 0.29
CHFR-220ENST00000541817 CAMSAP1Q5T5Y3 1602 aa16.83■□□□□ 0.28
CHFR-220ENST00000541817 PHF23Q9BUL5 403 aaPredicted RBP16.83■□□□□ 0.28
CHFR-220ENST00000541817 AFAP1Q8N556 730 aa16.81■□□□□ 0.28
CHFR-220ENST00000541817 TRAPPC8Q9Y2L5 1435 aa16.8■□□□□ 0.28
CHFR-220ENST00000541817 SENP3Q9H4L4 574 aaPredicted RBP16.8■□□□□ 0.28
CHFR-220ENST00000541817 ESF1Q9H501 851 aaKnown RBP16.8■□□□□ 0.28
CHFR-220ENST00000541817 PLCH2O75038 1416 aa16.79■□□□□ 0.28
CHFR-220ENST00000541817 CDK13Q14004 1512 aaKnown RBP16.75■□□□□ 0.27
CHFR-220ENST00000541817 DIP2CQ9Y2E4 1556 aa16.75■□□□□ 0.27
CHFR-220ENST00000541817 EFCAB2Q5VUJ9 269 aa16.74■□□□□ 0.27
CHFR-220ENST00000541817 ABCA6Q8N139 1617 aa16.72■□□□□ 0.27
CHFR-220ENST00000541817 ZNF518AQ6AHZ1 1483 aa16.7■□□□□ 0.26
CHFR-220ENST00000541817 MYO5CQ9NQX4 1742 aa16.7■□□□□ 0.26
CHFR-220ENST00000541817 TOM1O60784 492 aa16.69■□□□□ 0.26
CHFR-220ENST00000541817 SUPT6HQ7KZ85 1726 aaKnown RBP16.68■□□□□ 0.26
CHFR-220ENST00000541817 ATP1B4Q9UN42 357 aaPredicted RBP16.68■□□□□ 0.26
CHFR-220ENST00000541817 KDM5CP41229 1560 aa16.68■□□□□ 0.26
CHFR-220ENST00000541817 PPP6R1Q9UPN7 881 aa16.67■□□□□ 0.26
CHFR-220ENST00000541817 PKD2Q13563 968 aa16.65■□□□□ 0.26
CHFR-220ENST00000541817 ARHGAP5Q13017 1502 aa16.65■□□□□ 0.26
CHFR-220ENST00000541817 REREQ9P2R6 1566 aa16.64■□□□□ 0.25
CHFR-220ENST00000541817 KIF14Q15058 1648 aa16.64■□□□□ 0.25
CHFR-220ENST00000541817 RGS17Q9UGC6 210 aaPredicted RBP16.64■□□□□ 0.25
CHFR-220ENST00000541817 AGLP35573 1532 aa16.64■□□□□ 0.25
CHFR-220ENST00000541817 ZMYM3Q14202 1370 aa16.64■□□□□ 0.25
CHFR-220ENST00000541817 CNTLNQ9NXG0 1405 aa16.62■□□□□ 0.25
CHFR-220ENST00000541817 TCOF1Q13428 1488 aaKnown RBP16.61■□□□□ 0.25
CHFR-220ENST00000541817 MYO3AQ8NEV4 1616 aa16.61■□□□□ 0.25
CHFR-220ENST00000541817 NPATQ14207 1427 aa16.61■□□□□ 0.25
CHFR-220ENST00000541817 PLA2R1Q13018 1463 aa16.6■□□□□ 0.25
CHFR-220ENST00000541817 MLH3Q9UHC1 1453 aa16.59■□□□□ 0.25
CHFR-220ENST00000541817 CEP170BQ9Y4F5 1589 aaPredicted RBP16.59■□□□□ 0.25
CHFR-220ENST00000541817 CSRNP3Q8WYN3 585 aa16.58■□□□□ 0.24
CHFR-220ENST00000541817 ALKQ9UM73 1620 aa16.58■□□□□ 0.24
CHFR-220ENST00000541817 ZNF142P52746 1687 aaPredicted RBP16.58■□□□□ 0.24
CHFR-220ENST00000541817 CLTCQ00610 1675 aaKnown RBP16.58■□□□□ 0.24
CHFR-220ENST00000541817 MROH2AA6NES4 1674 aa16.57■□□□□ 0.24
CHFR-220ENST00000541817 KIDINS220Q9ULH0 1771 aa16.56■□□□□ 0.24
CHFR-220ENST00000541817 CDC42BPBQ9Y5S2 1711 aa16.56■□□□□ 0.24
CHFR-220ENST00000541817 SHANK2Q9UPX8 1470 aa16.55■□□□□ 0.24
CHFR-220ENST00000541817 CPS1P31327 1500 aa16.54■□□□□ 0.24
CHFR-220ENST00000541817 POTEAQ6S8J7 498 aa16.53■□□□□ 0.24
CHFR-220ENST00000541817 PTPRKQ15262 1439 aa16.53■□□□□ 0.24
CHFR-220ENST00000541817 ITSN2Q9NZM3 1697 aa16.52■□□□□ 0.23
CHFR-220ENST00000541817 GGT6Q6P531 493 aa16.5■□□□□ 0.23
CHFR-220ENST00000541817 DNMT1P26358 1616 aaKnown RBP16.49■□□□□ 0.23
CHFR-220ENST00000541817 NEURL4Q96JN8 1562 aa16.49■□□□□ 0.23
CHFR-220ENST00000541817 CDK11AQ9UQ88 783 aaPredicted RBP16.49■□□□□ 0.23
CHFR-220ENST00000541817 ABCC1P33527 1531 aa16.49■□□□□ 0.23
CHFR-220ENST00000541817 POLR1AO95602 1720 aaPredicted RBP16.48■□□□□ 0.23
CHFR-220ENST00000541817 TROQ12816 1431 aaPredicted RBP16.47■□□□□ 0.23
CHFR-220ENST00000541817 EHMT2Q96KQ7 1210 aa16.47■□□□□ 0.23
CHFR-220ENST00000541817 SETD1AO15047 1707 aaKnown RBP16.47■□□□□ 0.23
CHFR-220ENST00000541817 VWDEQ8N2E2 1590 aa16.46■□□□□ 0.23
CHFR-220ENST00000541817 ZNF777Q9ULD5 760 aaPredicted RBP16.45■□□□□ 0.22
CHFR-220ENST00000541817 A2ML1A8K2U0 1454 aa16.45■□□□□ 0.22
CHFR-220ENST00000541817 SAMD9LQ8IVG5 1584 aa16.43■□□□□ 0.22
CHFR-220ENST00000541817 FBXO31Q5XUX0 539 aaPredicted RBP16.43■□□□□ 0.22
CHFR-220ENST00000541817 PREX2Q70Z35 1606 aa16.43■□□□□ 0.22
CHFR-220ENST00000541817 CLIP1P30622 1438 aa16.43■□□□□ 0.22
CHFR-220ENST00000541817 LRRIQ1Q96JM4 1722 aa16.42■□□□□ 0.22
CHFR-220ENST00000541817 STRCP1A6NGW2 1772 aa16.42■□□□□ 0.22
CHFR-220ENST00000541817 SPAG9O60271 1321 aaKnown RBP16.42■□□□□ 0.22
CHFR-220ENST00000541817 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP16.41■□□□□ 0.222e-6■■■□□ 17.8
CHFR-220ENST00000541817 HNRNPMP52272 730 aaKnown RBP eCLIP16.41■□□□□ 0.22
CHFR-220ENST00000541817 ANKLE2Q86XL3 938 aa16.39■□□□□ 0.21
CHFR-220ENST00000541817 LRRC7Q96NW7 1537 aa16.38■□□□□ 0.21
CHFR-220ENST00000541817 NPHP4O75161 1426 aaPredicted RBP16.36■□□□□ 0.21
CHFR-220ENST00000541817 CDC42BPAQ5VT25 1732 aa16.36■□□□□ 0.21
CHFR-220ENST00000541817 A2MP01023 1474 aa16.36■□□□□ 0.21
CHFR-220ENST00000541817 SYCP2Q9BX26 1530 aa16.36■□□□□ 0.21
CHFR-220ENST00000541817 TNRQ92752 1358 aa16.36■□□□□ 0.21
CHFR-220ENST00000541817 FMN1Q68DA7 1419 aa16.35■□□□□ 0.21
CHFR-220ENST00000541817 ATP7AQ04656 1500 aa16.35■□□□□ 0.21
CHFR-220ENST00000541817 RNF17Q9BXT8 1623 aaKnown RBP16.34■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms