RNA–Protein interactions for RNA: ENST00000541284.5

CNOT4-212, Transcript of CCR4-NOT transcription complex subunit 4, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene CNOT4, Length 3,563 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CNOT4-212ENST00000541284 ZCCHC11Q5TAX3 1644 aaKnown RBP13.84□□□□□ -0.19
CNOT4-212ENST00000541284 SIN3AQ96ST3 1273 aa13.83□□□□□ -0.2
CNOT4-212ENST00000541284 SHANK2Q9UPX8 1470 aa13.83□□□□□ -0.2
CNOT4-212ENST00000541284 SAMD9LQ8IVG5 1584 aa13.82□□□□□ -0.2
CNOT4-212ENST00000541284 ABCC2Q92887 1545 aa13.82□□□□□ -0.2
CNOT4-212ENST00000541284 ATP10BO94823 1461 aa13.82□□□□□ -0.2
CNOT4-212ENST00000541284 TROQ12816 1431 aaPredicted RBP13.82□□□□□ -0.2
CNOT4-212ENST00000541284 TTC37Q6PGP7 1564 aa13.81□□□□□ -0.2
CNOT4-212ENST00000541284 GPATCH8Q9UKJ3 1502 aaKnown RBP13.81□□□□□ -0.2
CNOT4-212ENST00000541284 KCNH8Q96L42 1107 aa13.81□□□□□ -0.2
CNOT4-212ENST00000541284 MYO5CQ9NQX4 1742 aa13.81□□□□□ -0.2
CNOT4-212ENST00000541284 ROCK1Q13464 1354 aa13.8□□□□□ -0.2
CNOT4-212ENST00000541284 FAM50AQ14320 339 aaKnown RBP13.79□□□□□ -0.2
CNOT4-212ENST00000541284 PLXNC1O60486 1568 aa13.79□□□□□ -0.2
CNOT4-212ENST00000541284 SUPT16HQ9Y5B9 1047 aaKnown RBP13.78□□□□□ -0.2
CNOT4-212ENST00000541284 ARAP3Q8WWN8 1544 aa13.77□□□□□ -0.2
CNOT4-212ENST00000541284 CAMSAP2Q08AD1 1489 aa13.77□□□□□ -0.2
CNOT4-212ENST00000541284 PPP1R15AO75807 674 aaPredicted RBP13.77□□□□□ -0.21
CNOT4-212ENST00000541284 UACAQ9BZF9 1416 aa13.77□□□□□ -0.21
CNOT4-212ENST00000541284 UNC13BO14795 1591 aa13.76□□□□□ -0.21
CNOT4-212ENST00000541284 DAPK1P53355 1430 aa13.76□□□□□ -0.21
CNOT4-212ENST00000541284 TIMELESSQ9UNS1 1208 aa13.76□□□□□ -0.21
CNOT4-212ENST00000541284 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP13.75□□□□□ -0.21
CNOT4-212ENST00000541284 ABCA9Q8IUA7 1624 aa13.75□□□□□ -0.21
CNOT4-212ENST00000541284 ABCC5O15440 1437 aa13.75□□□□□ -0.21
CNOT4-212ENST00000541284 MBD5Q9P267 1494 aa13.73□□□□□ -0.21
CNOT4-212ENST00000541284 MAGI2Q86UL8 1455 aa13.72□□□□□ -0.21
CNOT4-212ENST00000541284 DEPDC5O75140 1603 aa13.72□□□□□ -0.21
CNOT4-212ENST00000541284 CARMIL2Q6F5E8 1435 aa13.71□□□□□ -0.21
CNOT4-212ENST00000541284 PRG4Q92954 1404 aaPredicted RBP13.71□□□□□ -0.21
CNOT4-212ENST00000541284 BCORL1Q5H9F3 1711 aa13.71□□□□□ -0.22
CNOT4-212ENST00000541284 MTUS2Q5JR59 1369 aa13.7□□□□□ -0.22
CNOT4-212ENST00000541284 ATP1B4Q9UN42 357 aaPredicted RBP13.69□□□□□ -0.22
CNOT4-212ENST00000541284 PTPRGP23470 1445 aa13.69□□□□□ -0.22
CNOT4-212ENST00000541284 PZPP20742 1482 aa13.68□□□□□ -0.22
CNOT4-212ENST00000541284 DDX10Q13206 875 aaKnown RBP13.67□□□□□ -0.22
CNOT4-212ENST00000541284 IQGAP3Q86VI3 1631 aa13.66□□□□□ -0.22
CNOT4-212ENST00000541284 TEX14Q8IWB6 1497 aa13.65□□□□□ -0.22
CNOT4-212ENST00000541284 ABCC1P33527 1531 aa13.65□□□□□ -0.22
CNOT4-212ENST00000541284 INO80Q9ULG1 1556 aaPredicted RBP13.64□□□□□ -0.23
CNOT4-212ENST00000541284 JPH4Q96JJ6 628 aa13.63□□□□□ -0.23
CNOT4-212ENST00000541284 HIRIP3Q9BW71 556 aaPredicted RBP13.62□□□□□ -0.23
CNOT4-212ENST00000541284 NCOA1Q15788 1441 aa13.62□□□□□ -0.23
CNOT4-212ENST00000541284 VWDEQ8N2E2 1590 aa13.61□□□□□ -0.23
CNOT4-212ENST00000541284 ARHGEF12Q9NZN5 1544 aa13.59□□□□□ -0.23
CNOT4-212ENST00000541284 CCER2I3L3R5 266 aa13.59□□□□□ -0.23
CNOT4-212ENST00000541284 TSHZ2Q9NRE2 1034 aa13.58□□□□□ -0.24
CNOT4-212ENST00000541284 MROH1Q8NDA8 1641 aa13.58□□□□□ -0.24
CNOT4-212ENST00000541284 TONSLQ96HA7 1378 aa13.58□□□□□ -0.24
CNOT4-212ENST00000541284 EIF2AK4Q9P2K8 1649 aaKnown RBP13.57□□□□□ -0.24
CNOT4-212ENST00000541284 NEURL4Q96JN8 1562 aa13.56□□□□□ -0.24
CNOT4-212ENST00000541284 RPRD2Q5VT52 1461 aaKnown RBP13.56□□□□□ -0.24
CNOT4-212ENST00000541284 LAMC1P11047 1609 aa13.56□□□□□ -0.24
CNOT4-212ENST00000541284 KIAA1107Q9UPP5 1409 aa13.56□□□□□ -0.24
CNOT4-212ENST00000541284 CHMP7Q8WUX9 453 aaPredicted RBP13.55□□□□□ -0.24
CNOT4-212ENST00000541284 ZFYVE16Q7Z3T8 1539 aa13.55□□□□□ -0.24
CNOT4-212ENST00000541284 SYCP2Q9BX26 1530 aa13.54□□□□□ -0.24
CNOT4-212ENST00000541284 IFT172Q9UG01 1749 aa13.54□□□□□ -0.24
CNOT4-212ENST00000541284 E9PCH4 1651 aa13.54□□□□□ -0.24
CNOT4-212ENST00000541284 RNF17Q9BXT8 1623 aaKnown RBP13.52□□□□□ -0.24
CNOT4-212ENST00000541284 MAP3K4Q9Y6R4 1608 aa13.52□□□□□ -0.25
CNOT4-212ENST00000541284 ANKRD30BQ9BXX2 1392 aa13.51□□□□□ -0.25
CNOT4-212ENST00000541284 CEP152O94986 1710 aa13.51□□□□□ -0.25
CNOT4-212ENST00000541284 KDM5CP41229 1560 aa13.51□□□□□ -0.25
CNOT4-212ENST00000541284 ATP10AO60312 1499 aa13.51□□□□□ -0.25
CNOT4-212ENST00000541284 CCDC141Q6ZP82 1450 aa13.51□□□□□ -0.25
CNOT4-212ENST00000541284 WDR7Q9Y4E6 1490 aa13.51□□□□□ -0.25
CNOT4-212ENST00000541284 KIDINS220Q9ULH0 1771 aa13.5□□□□□ -0.25
CNOT4-212ENST00000541284 RRP7BPQ9NSQ0 103 aa13.49□□□□□ -0.25
CNOT4-212ENST00000541284 PPRC1Q5VV67 1664 aaKnown RBP13.48□□□□□ -0.25
CNOT4-212ENST00000541284 WASHC2AQ641Q2 1341 aa13.48□□□□□ -0.25
CNOT4-212ENST00000541284 TRPM1Q7Z4N2 1603 aa13.48□□□□□ -0.25
CNOT4-212ENST00000541284 MYT1Q01538 1121 aa13.47□□□□□ -0.25
CNOT4-212ENST00000541284 PLCH2O75038 1416 aa13.47□□□□□ -0.25
CNOT4-212ENST00000541284 ANP32CO43423 234 aa13.47□□□□□ -0.25
CNOT4-212ENST00000541284 C9orf84Q5VXU9 1444 aa13.47□□□□□ -0.25
CNOT4-212ENST00000541284 CFAP74Q9C0B2 1584 aa13.47□□□□□ -0.25
CNOT4-212ENST00000541284 SPATA31E1Q6ZUB1 1445 aa13.47□□□□□ -0.25
CNOT4-212ENST00000541284 PRDM15P57071 1507 aaPredicted RBP13.46□□□□□ -0.25
CNOT4-212ENST00000541284 CHIC2Q9UKJ5 165 aa13.46□□□□□ -0.25
CNOT4-212ENST00000541284 RICTORQ6R327 1708 aa13.46□□□□□ -0.26
CNOT4-212ENST00000541284 ZNF644Q9H582 1327 aaPredicted RBP13.46□□□□□ -0.26
CNOT4-212ENST00000541284 SPHKAPQ2M3C7 1700 aa13.45□□□□□ -0.26
CNOT4-212ENST00000541284 FKBP8Q14318 412 aa13.45□□□□□ -0.26
CNOT4-212ENST00000541284 TRIM52Q96A61 297 aa13.45□□□□□ -0.26
CNOT4-212ENST00000541284 FAM135AQ9P2D6 1515 aa13.44□□□□□ -0.26
CNOT4-212ENST00000541284 PLEKHH2Q8IVE3 1493 aa13.44□□□□□ -0.26
CNOT4-212ENST00000541284 UHRF1BP1Q6BDS2 1440 aa13.44□□□□□ -0.26
CNOT4-212ENST00000541284 HSPA5P11021 654 aaKnown RBP13.44□□□□□ -0.26
CNOT4-212ENST00000541284 DUOX2Q9NRD8 1548 aa13.44□□□□□ -0.26
CNOT4-212ENST00000541284 MPHOSPH9Q99550 1183 aa13.43□□□□□ -0.26
CNOT4-212ENST00000541284 TET3O43151 1660 aa13.43□□□□□ -0.26
CNOT4-212ENST00000541284 GLI2P10070 1586 aa13.43□□□□□ -0.26
CNOT4-212ENST00000541284 FRMPD1Q5SYB0 1578 aa13.43□□□□□ -0.26
CNOT4-212ENST00000541284 C11orf95C9JLR9 678 aaPredicted RBP13.42□□□□□ -0.26
CNOT4-212ENST00000541284 ERBINQ96RT1 1412 aa13.42□□□□□ -0.26
CNOT4-212ENST00000541284 BCANQ96GW7 911 aa13.41□□□□□ -0.26
CNOT4-212ENST00000541284 CNTLNQ9NXG0 1405 aa13.41□□□□□ -0.26
CNOT4-212ENST00000541284 RTEL1-TNFRSF6BF6WH68 1400 aa13.41□□□□□ -0.26
CNOT4-212ENST00000541284 PLA2R1Q13018 1463 aa13.4□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms