RNA–Protein interactions for RNA: ENST00000540438.5

USP28-208, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2

Gene USP28, Length 3,015 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-208ENST00000540438 DENND4BO75064 1496 aaPredicted RBP23.76■■□□□ 1.39
USP28-208ENST00000540438 NUP153P49790 1475 aaKnown RBP23.76■■□□□ 1.39
USP28-208ENST00000540438 CCDC184Q52MB2 194 aa23.75■■□□□ 1.39
USP28-208ENST00000540438 TIMELESSQ9UNS1 1208 aa23.75■■□□□ 1.39
USP28-208ENST00000540438 WDR62O43379 1518 aa23.74■■□□□ 1.39
USP28-208ENST00000540438 WASHC2AQ641Q2 1341 aa23.73■■□□□ 1.39
USP28-208ENST00000540438 EIF4G3O43432 1585 aaKnown RBP23.73■■□□□ 1.39
USP28-208ENST00000540438 KIAA0586Q9BVV6 1533 aa23.73■■□□□ 1.39
USP28-208ENST00000540438 HNRNPMP52272 730 aaKnown RBP eCLIP23.7■■□□□ 1.39
USP28-208ENST00000540438 KDM2AQ9Y2K7 1162 aa23.7■■□□□ 1.38
USP28-208ENST00000540438 ABCC5O15440 1437 aa23.69■■□□□ 1.38
USP28-208ENST00000540438 HNRNPUQ00839 825 aaKnown RBP eCLIP23.69■■□□□ 1.38
USP28-208ENST00000540438 EIF4G2P78344 907 aaKnown RBP eCLIP23.68■■□□□ 1.38
USP28-208ENST00000540438 DAPK1P53355 1430 aa23.67■■□□□ 1.38
USP28-208ENST00000540438 ARHGEF11O15085 1522 aa23.67■■□□□ 1.38
USP28-208ENST00000540438 PLEKHD1A6NEE1 506 aa23.66■■□□□ 1.38
USP28-208ENST00000540438 FAM9BQ8IZU0 186 aa23.65■■□□□ 1.38
USP28-208ENST00000540438 KIAA0556O60303 1618 aa23.65■■□□□ 1.38
USP28-208ENST00000540438 PKD2Q13563 968 aa23.65■■□□□ 1.38
USP28-208ENST00000540438 CEP170Q5SW79 1584 aa23.61■■□□□ 1.37
USP28-208ENST00000540438 GRWD1Q9BQ67 446 aaKnown RBP eCLIP23.61■■□□□ 1.37
USP28-208ENST00000540438 TCOF1Q13428 1488 aaKnown RBP23.59■■□□□ 1.37
USP28-208ENST00000540438 KDM5BQ9UGL1 1544 aa23.59■■□□□ 1.37
USP28-208ENST00000540438 MIA2Q96PC5 1412 aa23.58■■□□□ 1.36
USP28-208ENST00000540438 KIF14Q15058 1648 aa23.56■■□□□ 1.36
USP28-208ENST00000540438 RAPGEF6Q8TEU7 1601 aa23.56■■□□□ 1.36
USP28-208ENST00000540438 SYNJ2O15056 1496 aa23.53■■□□□ 1.36
USP28-208ENST00000540438 ANKRD30BQ9BXX2 1392 aa23.53■■□□□ 1.36
USP28-208ENST00000540438 RGL3Q3MIN7 710 aa23.53■■□□□ 1.36
USP28-208ENST00000540438 TROQ12816 1431 aaPredicted RBP23.53■■□□□ 1.36
USP28-208ENST00000540438 CAMSAP2Q08AD1 1489 aa23.51■■□□□ 1.35
USP28-208ENST00000540438 GPATCH8Q9UKJ3 1502 aaKnown RBP23.51■■□□□ 1.35
USP28-208ENST00000540438 CARMIL2Q6F5E8 1435 aa23.51■■□□□ 1.35
USP28-208ENST00000540438 TSPY4P0CV99 314 aa23.5■■□□□ 1.35
USP28-208ENST00000540438 TSPY10P0CW01 314 aa23.5■■□□□ 1.35
USP28-208ENST00000540438 CCER2I3L3R5 266 aa23.49■■□□□ 1.35
USP28-208ENST00000540438 NUP155O75694 1391 aa23.49■■□□□ 1.35
USP28-208ENST00000540438 NEFLP07196 543 aa23.48■■□□□ 1.35
USP28-208ENST00000540438 MRS2Q9HD23 443 aa23.47■■□□□ 1.35
USP28-208ENST00000540438 NCOA1Q15788 1441 aa23.46■■□□□ 1.35
USP28-208ENST00000540438 KIF7Q2M1P5 1343 aa23.45■■□□□ 1.34
USP28-208ENST00000540438 MAGI1Q96QZ7 1491 aaPredicted RBP23.45■■□□□ 1.34
USP28-208ENST00000540438 TSHZ2Q9NRE2 1034 aa23.44■■□□□ 1.34
USP28-208ENST00000540438 DCAF11Q8TEB1 546 aa23.43■■□□□ 1.34
USP28-208ENST00000540438 AKNAQ7Z591 1439 aa23.43■■□□□ 1.34
USP28-208ENST00000540438 ATP10BO94823 1461 aa23.43■■□□□ 1.34
USP28-208ENST00000540438 PTPRGP23470 1445 aa23.42■■□□□ 1.34
USP28-208ENST00000540438 GCC2Q8IWJ2 1684 aa23.42■■□□□ 1.34
USP28-208ENST00000540438 CCDC7Q96M83 1385 aa23.4■■□□□ 1.34
USP28-208ENST00000540438 PRKRIP1Q9H875 184 aaPredicted RBP23.39■■□□□ 1.33
USP28-208ENST00000540438 ANKRD50Q9ULJ7 1429 aa23.39■■□□□ 1.33
USP28-208ENST00000540438 ANKRD30AQ9BXX3 1397 aa23.38■■□□□ 1.33
USP28-208ENST00000540438 PZPP20742 1482 aa23.38■■□□□ 1.33
USP28-208ENST00000540438 DNMT1P26358 1616 aaKnown RBP23.37■■□□□ 1.33
USP28-208ENST00000540438 ROCK1Q13464 1354 aa23.37■■□□□ 1.33
USP28-208ENST00000540438 RPRD2Q5VT52 1461 aaKnown RBP23.36■■□□□ 1.33
USP28-208ENST00000540438 CARD11Q9BXL7 1154 aa23.35■■□□□ 1.33
USP28-208ENST00000540438 SALL2Q9Y467 1007 aaPredicted RBP23.35■■□□□ 1.33
USP28-208ENST00000540438 NUP160Q12769 1436 aa23.34■■□□□ 1.33
USP28-208ENST00000540438 C9orf84Q5VXU9 1444 aa23.31■■□□□ 1.32
USP28-208ENST00000540438 MYT1LQ9UL68 1186 aa23.31■■□□□ 1.32
USP28-208ENST00000540438 TEX14Q8IWB6 1497 aa23.31■■□□□ 1.32
USP28-208ENST00000540438 KIF15Q9NS87 1388 aa23.31■■□□□ 1.32
USP28-208ENST00000540438 ST20-MTHFSA0A0A6YYL1 179 aa23.3■■□□□ 1.32
USP28-208ENST00000540438 USP47Q96K76 1375 aa23.29■■□□□ 1.32
USP28-208ENST00000540438 CNTLNQ9NXG0 1405 aa23.28■■□□□ 1.32
USP28-208ENST00000540438 KIAA1107Q9UPP5 1409 aa23.26■■□□□ 1.31
USP28-208ENST00000540438 NBPF1Q3BBV0 1214 aa23.26■■□□□ 1.31
USP28-208ENST00000540438 ERCC6L2Q5T890 1561 aa23.26■■□□□ 1.31
USP28-208ENST00000540438 SENP3Q9H4L4 574 aaPredicted RBP23.21■■□□□ 1.31
USP28-208ENST00000540438 ABCC10Q5T3U5 1492 aa23.18■■□□□ 1.3
USP28-208ENST00000540438 AFAP1Q8N556 730 aa23.17■■□□□ 1.3
USP28-208ENST00000540438 ABCA8O94911 1581 aa23.16■■□□□ 1.3
USP28-208ENST00000540438 SPATA31E1Q6ZUB1 1445 aa23.16■■□□□ 1.3
USP28-208ENST00000540438 B4GALNT3Q6L9W6 998 aa23.16■■□□□ 1.3
USP28-208ENST00000540438 CDC42BPAQ5VT25 1732 aa23.16■■□□□ 1.3
USP28-208ENST00000540438 ITSN2Q9NZM3 1697 aa23.11■■□□□ 1.29
USP28-208ENST00000540438 ARHGAP5Q13017 1502 aa23.11■■□□□ 1.29
USP28-208ENST00000540438 TMC1Q8TDI8 760 aa23.11■■□□□ 1.29
USP28-208ENST00000540438 ROCK2O75116 1388 aaKnown RBP23.1■■□□□ 1.29
USP28-208ENST00000540438 CC2D1BQ5T0F9 858 aaKnown RBP23.09■■□□□ 1.29
USP28-208ENST00000540438 MBD5Q9P267 1494 aa23.08■■□□□ 1.29
USP28-208ENST00000540438 SYCP2Q9BX26 1530 aa23.08■■□□□ 1.29
USP28-208ENST00000540438 BCORL1Q5H9F3 1711 aa23.07■■□□□ 1.28
USP28-208ENST00000540438 CHD1O14646 1710 aa23.06■■□□□ 1.28
USP28-208ENST00000540438 PLEKHH2Q8IVE3 1493 aa23.06■■□□□ 1.28
USP28-208ENST00000540438 RBM19Q9Y4C8 960 aaKnown RBP23.06■■□□□ 1.28
USP28-208ENST00000540438 ADGRL2O95490 1459 aa23.06■■□□□ 1.28
USP28-208ENST00000540438 DHX29Q7Z478 1369 aaKnown RBP23.04■■□□□ 1.28
USP28-208ENST00000540438 SAMD9LQ8IVG5 1584 aa23.03■■□□□ 1.28
USP28-208ENST00000540438 TTC37Q6PGP7 1564 aa23.01■■□□□ 1.27
USP28-208ENST00000540438 ADGBQ8N7X0 1667 aa23.01■■□□□ 1.27
USP28-208ENST00000540438 CCDC144AA2RUR9 1427 aa23■■□□□ 1.27
USP28-208ENST00000540438 CCDC141Q6ZP82 1450 aa23■■□□□ 1.27
USP28-208ENST00000540438 ADCY10Q96PN6 1610 aa22.99■■□□□ 1.27
USP28-208ENST00000540438 CROCC2H7BZ55 1655 aa22.97■■□□□ 1.27
USP28-208ENST00000540438 CDC42BPBQ9Y5S2 1711 aa22.97■■□□□ 1.27
USP28-208ENST00000540438 ARHGEF12Q9NZN5 1544 aa22.96■■□□□ 1.27
USP28-208ENST00000540438 EFCAB2Q5VUJ9 269 aa22.96■■□□□ 1.27
USP28-208ENST00000540438 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP22.95■■□□□ 1.27
Retrieved 100 of 20,778 RNA–protein pairs in 50.4 ms