RNA–Protein interactions for RNA: ENST00000538070.1

UBE3B-208, Transcript of ubiquitin protein ligase E3B, humanhuman

TSL 5

Gene UBE3B, Length 3,655 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3B-208ENST00000538070 PKD2Q13563 968 aa12.13□□□□□ -0.47
UBE3B-208ENST00000538070 MYT1LQ9UL68 1186 aa12.12□□□□□ -0.47
UBE3B-208ENST00000538070 TSPY4P0CV99 314 aa12.12□□□□□ -0.47
UBE3B-208ENST00000538070 TSPY10P0CW01 314 aa12.12□□□□□ -0.47
UBE3B-208ENST00000538070 LRRIQ1Q96JM4 1722 aa12.11□□□□□ -0.47
UBE3B-208ENST00000538070 PBRM1Q86U86 1689 aa12.11□□□□□ -0.47
UBE3B-208ENST00000538070 ADAMTS12P58397 1594 aa12.11□□□□□ -0.47
UBE3B-208ENST00000538070 NBPF8Q3BBV2 869 aa12.11□□□□□ -0.47
UBE3B-208ENST00000538070 HECW1Q76N89 1606 aa12.11□□□□□ -0.47
UBE3B-208ENST00000538070 GRIN2AQ12879 1464 aa12.11□□□□□ -0.47
UBE3B-208ENST00000538070 KIAA0586Q9BVV6 1533 aa12.1□□□□□ -0.47
UBE3B-208ENST00000538070 UGGT2Q9NYU1 1516 aa12.1□□□□□ -0.47
UBE3B-208ENST00000538070 RGL3Q3MIN7 710 aa12.1□□□□□ -0.47
UBE3B-208ENST00000538070 WASHC2AQ641Q2 1341 aa12.09□□□□□ -0.47
UBE3B-208ENST00000538070 C11orf95C9JLR9 678 aaPredicted RBP12.09□□□□□ -0.47
UBE3B-208ENST00000538070 CARMIL2Q6F5E8 1435 aa12.08□□□□□ -0.48
UBE3B-208ENST00000538070 NUP153P49790 1475 aaKnown RBP12.07□□□□□ -0.48
UBE3B-208ENST00000538070 KDM6BO15054 1643 aa12.07□□□□□ -0.48
UBE3B-208ENST00000538070 DISP1Q96F81 1524 aa12.07□□□□□ -0.48
UBE3B-208ENST00000538070 CCDC184Q52MB2 194 aa12.07□□□□□ -0.48
UBE3B-208ENST00000538070 MRS2Q9HD23 443 aa12.06□□□□□ -0.48
UBE3B-208ENST00000538070 DAPK1P53355 1430 aa12.06□□□□□ -0.48
UBE3B-208ENST00000538070 ABCC5O15440 1437 aa12.06□□□□□ -0.48
UBE3B-208ENST00000538070 WDR62O43379 1518 aa12.05□□□□□ -0.48
UBE3B-208ENST00000538070 EIF4G3O43432 1585 aaKnown RBP12.05□□□□□ -0.48
UBE3B-208ENST00000538070 NUP155O75694 1391 aa12.04□□□□□ -0.48
UBE3B-208ENST00000538070 MIA2Q96PC5 1412 aa12.03□□□□□ -0.48
UBE3B-208ENST00000538070 DCAF11Q8TEB1 546 aa12.03□□□□□ -0.48
UBE3B-208ENST00000538070 CCER2I3L3R5 266 aa12.02□□□□□ -0.49
UBE3B-208ENST00000538070 TROQ12816 1431 aaPredicted RBP12.02□□□□□ -0.49
UBE3B-208ENST00000538070 PTPRGP23470 1445 aa12.01□□□□□ -0.49
UBE3B-208ENST00000538070 KIAA0556O60303 1618 aa12.01□□□□□ -0.49
UBE3B-208ENST00000538070 SALL2Q9Y467 1007 aaPredicted RBP12.01□□□□□ -0.49
UBE3B-208ENST00000538070 SYNJ2O15056 1496 aa12.01□□□□□ -0.49
UBE3B-208ENST00000538070 CARD11Q9BXL7 1154 aa12□□□□□ -0.49
UBE3B-208ENST00000538070 ANKRD30AQ9BXX3 1397 aa12□□□□□ -0.49
UBE3B-208ENST00000538070 ARHGEF11O15085 1522 aa11.99□□□□□ -0.49
UBE3B-208ENST00000538070 ANKRD30BQ9BXX2 1392 aa11.98□□□□□ -0.49
UBE3B-208ENST00000538070 RAPGEF6Q8TEU7 1601 aa11.98□□□□□ -0.49
UBE3B-208ENST00000538070 CAMSAP2Q08AD1 1489 aa11.97□□□□□ -0.49
UBE3B-208ENST00000538070 TCOF1Q13428 1488 aaKnown RBP11.97□□□□□ -0.49
UBE3B-208ENST00000538070 CEP170Q5SW79 1584 aa11.97□□□□□ -0.49
UBE3B-208ENST00000538070 DENND4BO75064 1496 aaPredicted RBP11.97□□□□□ -0.49
UBE3B-208ENST00000538070 GPATCH8Q9UKJ3 1502 aaKnown RBP11.97□□□□□ -0.49
UBE3B-208ENST00000538070 KIF7Q2M1P5 1343 aa11.97□□□□□ -0.49
UBE3B-208ENST00000538070 MAGI1Q96QZ7 1491 aaPredicted RBP11.96□□□□□ -0.49
UBE3B-208ENST00000538070 ANKRD50Q9ULJ7 1429 aa11.95□□□□□ -0.5
UBE3B-208ENST00000538070 SENP3Q9H4L4 574 aaPredicted RBP11.95□□□□□ -0.5
UBE3B-208ENST00000538070 PRKRIP1Q9H875 184 aaPredicted RBP11.95□□□□□ -0.5
UBE3B-208ENST00000538070 NCOA1Q15788 1441 aa11.95□□□□□ -0.5
UBE3B-208ENST00000538070 CCDC7Q96M83 1385 aa11.94□□□□□ -0.5
UBE3B-208ENST00000538070 KIF14Q15058 1648 aa11.94□□□□□ -0.5
UBE3B-208ENST00000538070 AKNAQ7Z591 1439 aa11.94□□□□□ -0.5
UBE3B-208ENST00000538070 TSHZ2Q9NRE2 1034 aa11.93□□□□□ -0.5
UBE3B-208ENST00000538070 ST20-MTHFSA0A0A6YYL1 179 aa11.93□□□□□ -0.5
UBE3B-208ENST00000538070 ATP10BO94823 1461 aa11.93□□□□□ -0.5
UBE3B-208ENST00000538070 KIF15Q9NS87 1388 aa11.93□□□□□ -0.5
UBE3B-208ENST00000538070 ROCK1Q13464 1354 aa11.92□□□□□ -0.5
UBE3B-208ENST00000538070 C9orf84Q5VXU9 1444 aa11.91□□□□□ -0.5
UBE3B-208ENST00000538070 USP47Q96K76 1375 aa11.91□□□□□ -0.5
UBE3B-208ENST00000538070 TMC1Q8TDI8 760 aa11.9□□□□□ -0.5
UBE3B-208ENST00000538070 RPRD2Q5VT52 1461 aaKnown RBP11.88□□□□□ -0.51
UBE3B-208ENST00000538070 NBPF1Q3BBV0 1214 aa11.88□□□□□ -0.51
UBE3B-208ENST00000538070 CNTLNQ9NXG0 1405 aa11.88□□□□□ -0.51
UBE3B-208ENST00000538070 KIAA1107Q9UPP5 1409 aa11.88□□□□□ -0.51
UBE3B-208ENST00000538070 NUP160Q12769 1436 aa11.87□□□□□ -0.51
UBE3B-208ENST00000538070 KDM5BQ9UGL1 1544 aa11.87□□□□□ -0.51
UBE3B-208ENST00000538070 AFAP1Q8N556 730 aa11.87□□□□□ -0.51
UBE3B-208ENST00000538070 PZPP20742 1482 aa11.86□□□□□ -0.51
UBE3B-208ENST00000538070 DNMT1P26358 1616 aaKnown RBP11.86□□□□□ -0.51
UBE3B-208ENST00000538070 CC2D1BQ5T0F9 858 aaKnown RBP11.85□□□□□ -0.51
UBE3B-208ENST00000538070 GCC2Q8IWJ2 1684 aa11.85□□□□□ -0.51
UBE3B-208ENST00000538070 ROCK2O75116 1388 aaKnown RBP11.85□□□□□ -0.51
UBE3B-208ENST00000538070 CHGAP10645 457 aaKnown RBP11.85□□□□□ -0.51
UBE3B-208ENST00000538070 B4GALNT3Q6L9W6 998 aa11.85□□□□□ -0.51
UBE3B-208ENST00000538070 ARHGAP5Q13017 1502 aa11.82□□□□□ -0.52
UBE3B-208ENST00000538070 EFCAB2Q5VUJ9 269 aa11.82□□□□□ -0.52
UBE3B-208ENST00000538070 TEX14Q8IWB6 1497 aa11.81□□□□□ -0.52
UBE3B-208ENST00000538070 CCDC144AA2RUR9 1427 aa11.8□□□□□ -0.52
UBE3B-208ENST00000538070 KIF3BO15066 747 aa11.78□□□□□ -0.52
UBE3B-208ENST00000538070 ERCC6L2Q5T890 1561 aa11.78□□□□□ -0.52
UBE3B-208ENST00000538070 SPAG9O60271 1321 aaKnown RBP11.78□□□□□ -0.52
UBE3B-208ENST00000538070 RBM19Q9Y4C8 960 aaKnown RBP11.77□□□□□ -0.53
UBE3B-208ENST00000538070 PLEKHH2Q8IVE3 1493 aa11.76□□□□□ -0.53
UBE3B-208ENST00000538070 ABCC10Q5T3U5 1492 aa11.76□□□□□ -0.53
UBE3B-208ENST00000538070 RSPH4AQ5TD94 716 aa11.76□□□□□ -0.53
UBE3B-208ENST00000538070 ITSN2Q9NZM3 1697 aa11.76□□□□□ -0.53
UBE3B-208ENST00000538070 ABCA8O94911 1581 aa11.75□□□□□ -0.53
UBE3B-208ENST00000538070 SYCP2Q9BX26 1530 aa11.75□□□□□ -0.53
UBE3B-208ENST00000538070 CCDC141Q6ZP82 1450 aa11.75□□□□□ -0.53
UBE3B-208ENST00000538070 NPM1P06748 294 aaKnown RBP eCLIP11.74□□□□□ -0.53
UBE3B-208ENST00000538070 SPATA31E1Q6ZUB1 1445 aa11.73□□□□□ -0.53
UBE3B-208ENST00000538070 NUTM2DQ5VT03 806 aaPredicted RBP11.73□□□□□ -0.53
UBE3B-208ENST00000538070 GGT6Q6P531 493 aa11.73□□□□□ -0.53
UBE3B-208ENST00000538070 PANK3Q9H999 370 aa11.73□□□□□ -0.53
UBE3B-208ENST00000538070 ZBED9Q6R2W3 1325 aa11.72□□□□□ -0.53
UBE3B-208ENST00000538070 CDC42BPAQ5VT25 1732 aa11.72□□□□□ -0.53
UBE3B-208ENST00000538070 MBD5Q9P267 1494 aa11.72□□□□□ -0.53
UBE3B-208ENST00000538070 ADGRL2O95490 1459 aa11.71□□□□□ -0.53
UBE3B-208ENST00000538070 CCDC136Q96JN2 1154 aa11.71□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms